Clone Information

BLAST Search Result

Clone Name	bast63f12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_468738.1\| Oryza sativa (japonica cultivar-group), mRNA	446	e-122
2	gb\|AC114983.6\| Oryza sativa (japonica cultivar-group) chromosome...	446	e-122
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	446	e-122
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	446	e-122
5	dbj\|AK070282.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	446	e-122
6	gb\|AY106713.1\| Zea mays PCO091216 mRNA sequence	149	9e-33
7	ref\|XM_480551.1\| Oryza sativa (japonica cultivar-group), mRNA	48	0.024
8	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.024
9	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.024
10	dbj\|AP005285.2\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.024
11	dbj\|AP005416.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.024
12	dbj\|AP004589.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.024
13	dbj\|AK105852.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.024
14	gb\|AY107346.1\| Zea mays PCO063977 mRNA sequence	48	0.024
15	ref\|XM_480561.1\| Oryza sativa (japonica cultivar-group), mRNA	46	0.093
16	emb\|AL591791.1\|SME591791 Sinorhizobium meliloti 1021 complete ch...	46	0.093
17	gb\|CP000230.1\| Rhodospirillum rubrum ATCC 11170, complete genome	46	0.093
18	gb\|U09269.1\|TAU09269 Thunbergia alata delta6-palmitoyl-acyl carr...	46	0.093
19	gb\|AY104235.1\| Zea mays PCO105183 mRNA sequence	44	0.37
20	gb\|U07597.1\|TAU07597 Thunbergia alata clone pTAD2 delta-9 stearo...	44	0.37
21	ref\|NM_190163.1\| Oryza sativa (japonica cultivar-group), predic...	42	1.5
22	gb\|AC160126.2\| Mus musculus BAC clone RP23-295C1 from chromosome...	42	1.5
23	emb\|AL939105.1\|SCO939105 Streptomyces coelicolor A3(2) complete ...	42	1.5
24	emb\|AJ278573.1\|SNA278573 Streptomyces natalensis pimaricin biosy...	42	1.5
25	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
26	dbj\|AP003227.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
27	dbj\|AK120809.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.5
28	dbj\|AK101524.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.5
29	dbj\|AK059526.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.5
30	emb\|CT010439.6\| Mouse DNA sequence from clone RP23-26E8 on chrom...	42	1.5
31	gb\|DQ058416.1\| Rhizobium etli strain 8C-3 plasmid clone REB02, p...	40	5.7
32	ref\|XM_465876.1\| Oryza sativa (japonica cultivar-group), mRNA	40	5.7
33	gb\|BT016658.1\| Zea mays clone Contig491 mRNA sequence	40	5.7
34	gb\|BT018751.1\| Zea mays clone EL01N0523A03.d mRNA sequence	40	5.7
35	ref\|NM_033513.1\| Homo sapiens chromosome 19 open reading frame 2...	40	5.7
36	gb\|BC009520.1\| Homo sapiens chromosome 19 open reading frame 20,...	40	5.7
37	emb\|BX640446.1\| Bordetella bronchiseptica strain RB50, complete ...	40	5.7
38	emb\|BX640428.1\| Bordetella parapertussis strain 12822, complete ...	40	5.7
39	emb\|BX640417.1\| Bordetella pertussis strain Tohama I, complete g...	40	5.7
40	dbj\|AK126170.1\| Homo sapiens cDNA FLJ44182 fis, clone THYMU20383...	40	5.7
41	gb\|CP000248.1\| Novosphingobium aromaticivorans DSM 12444, comple...	40	5.7
42	gb\|AC011531.7\|AC011531 Homo sapiens chromosome 19 clone LLNLR-23...	40	5.7
43	dbj\|BA000043.1\| Geobacillus kaustophilus HTA426 DNA, complete ge...	40	5.7
44	dbj\|AK069683.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.7
45	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	40	5.7
46	gb\|AY109739.1\| Zea mays CL27608_1 mRNA sequence	40	5.7
47	gb\|DQ065771.1\| Polyangium cellulosum hypothetical protein gene, ...	40	5.7
48	gb\|CP000155.1\| Hahella chejuensis KCTC 2396, complete genome	40	5.7
49	gb\|AF020203.1\| Pelargonium x hortorum stearoyl-ACP desaturase (p...	40	5.7
50	dbj\|AP006104.1\| Lotus japonicus genomic DNA, chromosome 1, clone...	40	5.7

>ref|XM_468738.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1496

 Score =  446 bits (225), Expect = e-122
 Identities = 379/430 (88%), Gaps = 9/430 (2%)
 Strand = Plus / Plus

                                                                        
Query: 2    cggcgcgttccaggagcgggcgaccttcgtctcccacgtgaacacggcgaggctcgccgg 61
            |||||||||||||||||| || |||||| |||||||||   |||||||||||||||| ||
Sbjct: 725  cggcgcgttccaggagcgcgccaccttcatctcccacggccacacggcgaggctcgcggg 784

                                                                        
Query: 62   gcagcacggcgaccaggcgctcgccaagatctgcggcgtgattgccgccgacgagaagag 121
            |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct: 785  gcagcacggcgaccgggcgctcgccaagatctgcggcgtgatcgccgccgacgagaggcg 844

                                                                        
Query: 122  gcacgaggcgggctacaccagggtgtccgccaagctcttcgaggtggaccccgacggcat 181
            |||||||||||||||||| | || ||||| || ||| |||||| | ||||| ||||||||
Sbjct: 845  gcacgaggcgggctacacgatggcgtccggcaggctgttcgagctcgacccggacggcat 904

                                                                        
Query: 182  agtgcgcgcgctggcgcacgtcatgcgcggaaaggtcaccatgccggggctgctcatgtc 241
             | ||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct: 905  ggcgcgcgcgctggcggacgtcatgcgcgggaaggtgaccatgccggggcagctcatgtc 964

                                                                        
Query: 242  cgacggccgcgacgccgaaag------cagcctgttcgaccggttctccgccgtggcgca 295
             ||||||||||||| |||  |      ||||||||||| ||||||||||||||||||| |
Sbjct: 965  ggacggccgcgacggcgacggcgagcacagcctgttcgcccggttctccgccgtggcgga 1024

                                                                        
Query: 296  gcgtgccggcgtgtacacggcgagggactacggcgatctggtggagcacttcgtgcgcag 355
            ||| |||||||||||||||||||||||||||||||| || || |||||||||||||| ||
Sbjct: 1025 gcgcgccggcgtgtacacggcgagggactacggcgacctcgtcgagcacttcgtgcggag 1084

                                                                        
Query: 356  gtggcgggtggcggagctc---gccgggctctctggagagggccgccgcgcgcaggagta 412
            |||||||||||||||||||   || |||||||| || |||||||| ||||||||||||||
Sbjct: 1085 gtggcgggtggcggagctcgcggcggggctctccggcgagggccgacgcgcgcaggagta 1144

                      
Query: 413  cgtgtgcggg 422
            | ||||||||
Sbjct: 1145 cctgtgcggg 1154

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>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19
              map E30331S, complete sequence
          Length = 164820

 Score =  446 bits (225), Expect = e-122
 Identities = 379/430 (88%), Gaps = 9/430 (2%)
 Strand = Plus / Plus

                                                                          
Query: 2      cggcgcgttccaggagcgggcgaccttcgtctcccacgtgaacacggcgaggctcgccgg 61
              |||||||||||||||||| || |||||| |||||||||   |||||||||||||||| ||
Sbjct: 127212 cggcgcgttccaggagcgcgccaccttcatctcccacggccacacggcgaggctcgcggg 127271

                                                                          
Query: 62     gcagcacggcgaccaggcgctcgccaagatctgcggcgtgattgccgccgacgagaagag 121
              |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct: 127272 gcagcacggcgaccgggcgctcgccaagatctgcggcgtgatcgccgccgacgagaggcg 127331

                                                                          
Query: 122    gcacgaggcgggctacaccagggtgtccgccaagctcttcgaggtggaccccgacggcat 181
              |||||||||||||||||| | || ||||| || ||| |||||| | ||||| ||||||||
Sbjct: 127332 gcacgaggcgggctacacgatggcgtccggcaggctgttcgagctcgacccggacggcat 127391

                                                                          
Query: 182    agtgcgcgcgctggcgcacgtcatgcgcggaaaggtcaccatgccggggctgctcatgtc 241
               | ||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct: 127392 ggcgcgcgcgctggcggacgtcatgcgcgggaaggtgaccatgccggggcagctcatgtc 127451

                                                                          
Query: 242    cgacggccgcgacgccgaaag------cagcctgttcgaccggttctccgccgtggcgca 295
               ||||||||||||| |||  |      ||||||||||| ||||||||||||||||||| |
Sbjct: 127452 ggacggccgcgacggcgacggcgagcacagcctgttcgcccggttctccgccgtggcgga 127511

                                                                          
Query: 296    gcgtgccggcgtgtacacggcgagggactacggcgatctggtggagcacttcgtgcgcag 355
              ||| |||||||||||||||||||||||||||||||| || || |||||||||||||| ||
Sbjct: 127512 gcgcgccggcgtgtacacggcgagggactacggcgacctcgtcgagcacttcgtgcggag 127571

                                                                          
Query: 356    gtggcgggtggcggagctc---gccgggctctctggagagggccgccgcgcgcaggagta 412
              |||||||||||||||||||   || |||||||| || |||||||| ||||||||||||||
Sbjct: 127572 gtggcgggtggcggagctcgcggcggggctctccggcgagggccgacgcgcgcaggagta 127631

                        
Query: 413    cgtgtgcggg 422
              | ||||||||
Sbjct: 127632 cctgtgcggg 127641

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  446 bits (225), Expect = e-122
 Identities = 379/430 (88%), Gaps = 9/430 (2%)
 Strand = Plus / Minus

                                                                            
Query: 2        cggcgcgttccaggagcgggcgaccttcgtctcccacgtgaacacggcgaggctcgccgg 61
                |||||||||||||||||| || |||||| |||||||||   |||||||||||||||| ||
Sbjct: 17436531 cggcgcgttccaggagcgcgccaccttcatctcccacggccacacggcgaggctcgcggg 17436472

                                                                            
Query: 62       gcagcacggcgaccaggcgctcgccaagatctgcggcgtgattgccgccgacgagaagag 121
                |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct: 17436471 gcagcacggcgaccgggcgctcgccaagatctgcggcgtgatcgccgccgacgagaggcg 17436412

                                                                            
Query: 122      gcacgaggcgggctacaccagggtgtccgccaagctcttcgaggtggaccccgacggcat 181
                |||||||||||||||||| | || ||||| || ||| |||||| | ||||| ||||||||
Sbjct: 17436411 gcacgaggcgggctacacgatggcgtccggcaggctgttcgagctcgacccggacggcat 17436352

                                                                            
Query: 182      agtgcgcgcgctggcgcacgtcatgcgcggaaaggtcaccatgccggggctgctcatgtc 241
                 | ||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct: 17436351 ggcgcgcgcgctggcggacgtcatgcgcgggaaggtgaccatgccggggcagctcatgtc 17436292

                                                                            
Query: 242      cgacggccgcgacgccgaaag------cagcctgttcgaccggttctccgccgtggcgca 295
                 ||||||||||||| |||  |      ||||||||||| ||||||||||||||||||| |
Sbjct: 17436291 ggacggccgcgacggcgacggcgagcacagcctgttcgcccggttctccgccgtggcgga 17436232

                                                                            
Query: 296      gcgtgccggcgtgtacacggcgagggactacggcgatctggtggagcacttcgtgcgcag 355
                ||| |||||||||||||||||||||||||||||||| || || |||||||||||||| ||
Sbjct: 17436231 gcgcgccggcgtgtacacggcgagggactacggcgacctcgtcgagcacttcgtgcggag 17436172

                                                                            
Query: 356      gtggcgggtggcggagctc---gccgggctctctggagagggccgccgcgcgcaggagta 412
                |||||||||||||||||||   || |||||||| || |||||||| ||||||||||||||
Sbjct: 17436171 gtggcgggtggcggagctcgcggcggggctctccggcgagggccgacgcgcgcaggagta 17436112

                          
Query: 413      cgtgtgcggg 422
                | ||||||||
Sbjct: 17436111 cctgtgcggg 17436102

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  446 bits (225), Expect = e-122
 Identities = 379/430 (88%), Gaps = 9/430 (2%)
 Strand = Plus / Minus

                                                                            
Query: 2        cggcgcgttccaggagcgggcgaccttcgtctcccacgtgaacacggcgaggctcgccgg 61
                |||||||||||||||||| || |||||| |||||||||   |||||||||||||||| ||
Sbjct: 17430072 cggcgcgttccaggagcgcgccaccttcatctcccacggccacacggcgaggctcgcggg 17430013

                                                                            
Query: 62       gcagcacggcgaccaggcgctcgccaagatctgcggcgtgattgccgccgacgagaagag 121
                |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct: 17430012 gcagcacggcgaccgggcgctcgccaagatctgcggcgtgatcgccgccgacgagaggcg 17429953

                                                                            
Query: 122      gcacgaggcgggctacaccagggtgtccgccaagctcttcgaggtggaccccgacggcat 181
                |||||||||||||||||| | || ||||| || ||| |||||| | ||||| ||||||||
Sbjct: 17429952 gcacgaggcgggctacacgatggcgtccggcaggctgttcgagctcgacccggacggcat 17429893

                                                                            
Query: 182      agtgcgcgcgctggcgcacgtcatgcgcggaaaggtcaccatgccggggctgctcatgtc 241
                 | ||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct: 17429892 ggcgcgcgcgctggcggacgtcatgcgcgggaaggtgaccatgccggggcagctcatgtc 17429833

                                                                            
Query: 242      cgacggccgcgacgccgaaag------cagcctgttcgaccggttctccgccgtggcgca 295
                 ||||||||||||| |||  |      ||||||||||| ||||||||||||||||||| |
Sbjct: 17429832 ggacggccgcgacggcgacggcgagcacagcctgttcgcccggttctccgccgtggcgga 17429773

                                                                            
Query: 296      gcgtgccggcgtgtacacggcgagggactacggcgatctggtggagcacttcgtgcgcag 355
                ||| |||||||||||||||||||||||||||||||| || || |||||||||||||| ||
Sbjct: 17429772 gcgcgccggcgtgtacacggcgagggactacggcgacctcgtcgagcacttcgtgcggag 17429713

                                                                            
Query: 356      gtggcgggtggcggagctc---gccgggctctctggagagggccgccgcgcgcaggagta 412
                |||||||||||||||||||   || |||||||| || |||||||| ||||||||||||||
Sbjct: 17429712 gtggcgggtggcggagctcgcggcggggctctccggcgagggccgacgcgcgcaggagta 17429653

                          
Query: 413      cgtgtgcggg 422
                | ||||||||
Sbjct: 17429652 cctgtgcggg 17429643

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>dbj|AK070282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A21, full
            insert sequence
          Length = 1506

 Score =  446 bits (225), Expect = e-122
 Identities = 379/430 (88%), Gaps = 9/430 (2%)
 Strand = Plus / Plus

                                                                        
Query: 2    cggcgcgttccaggagcgggcgaccttcgtctcccacgtgaacacggcgaggctcgccgg 61
            |||||||||||||||||| || |||||| |||||||||   |||||||||||||||| ||
Sbjct: 735  cggcgcgttccaggagcgcgccaccttcatctcccacggccacacggcgaggctcgcggg 794

                                                                        
Query: 62   gcagcacggcgaccaggcgctcgccaagatctgcggcgtgattgccgccgacgagaagag 121
            |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct: 795  gcagcacggcgaccgggcgctcgccaagatctgcggcgtgatcgccgccgacgagaggcg 854

                                                                        
Query: 122  gcacgaggcgggctacaccagggtgtccgccaagctcttcgaggtggaccccgacggcat 181
            |||||||||||||||||| | || ||||| || ||| |||||| | ||||| ||||||||
Sbjct: 855  gcacgaggcgggctacacgatggcgtccggcaggctgttcgagctcgacccggacggcat 914

                                                                        
Query: 182  agtgcgcgcgctggcgcacgtcatgcgcggaaaggtcaccatgccggggctgctcatgtc 241
             | ||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct: 915  ggcgcgcgcgctggcggacgtcatgcgcgggaaggtgaccatgccggggcagctcatgtc 974

                                                                        
Query: 242  cgacggccgcgacgccgaaag------cagcctgttcgaccggttctccgccgtggcgca 295
             ||||||||||||| |||  |      ||||||||||| ||||||||||||||||||| |
Sbjct: 975  ggacggccgcgacggcgacggcgagcacagcctgttcgcccggttctccgccgtggcgga 1034

                                                                        
Query: 296  gcgtgccggcgtgtacacggcgagggactacggcgatctggtggagcacttcgtgcgcag 355
            ||| |||||||||||||||||||||||||||||||| || || |||||||||||||| ||
Sbjct: 1035 gcgcgccggcgtgtacacggcgagggactacggcgacctcgtcgagcacttcgtgcggag 1094

                                                                        
Query: 356  gtggcgggtggcggagctc---gccgggctctctggagagggccgccgcgcgcaggagta 412
            |||||||||||||||||||   || |||||||| || |||||||| ||||||||||||||
Sbjct: 1095 gtggcgggtggcggagctcgcggcggggctctccggcgagggccgacgcgcgcaggagta 1154

                      
Query: 413  cgtgtgcggg 422
            | ||||||||
Sbjct: 1155 cctgtgcggg 1164

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>gb|AY106713.1| Zea mays PCO091216 mRNA sequence
          Length = 692

 Score =  149 bits (75), Expect = 9e-33
 Identities = 221/270 (81%), Gaps = 6/270 (2%)
 Strand = Plus / Plus

                                                                       
Query: 159 ttcgaggtggaccccgacggcatagtgcgcgcgctggcgcacgtcatgcgcggaaaggtc 218
           |||||||  |||||||||||  | ||||| ||||| |||  ||||||||| |  ||||||
Sbjct: 16  ttcgaggccgaccccgacggagtggtgcgggcgctcgcggccgtcatgcgagccaaggtc 75

                                                                       
Query: 219 accatgccggggctgctcatgtccgacggccgcgacgccgaaagcagcctgttcgaccgg 278
           |||||||| ||   || |||| | ||||||||||||| |      ||||| |||||||  
Sbjct: 76  accatgcccggcgagcgcatgacggacggccgcgacgac------agcctcttcgaccac 129

                                                                       
Query: 279 ttctccgccgtggcgcagcgtgccggcgtgtacacggcgagggactacggcgatctggtg 338
           ||||| || ||||||||||| ||||| ||||||||||||  ||||||||||||  |||||
Sbjct: 130 ttctcggcggtggcgcagcgcgccggggtgtacacggcggcggactacggcgacatggtg 189

                                                                       
Query: 339 gagcacttcgtgcgcaggtggcgggtggcggagctcgccgggctctctggagagggccgc 398
           |||||||||||||||| |||| ||||| ||| ||||   ||||| ||||| ||||| |||
Sbjct: 190 gagcacttcgtgcgcacgtggagggtgccggggctccaggggctgtctggcgaggggcgc 249

                                         
Query: 399 cgcgcgcaggagtacgtgtgcgggctgccg 428
           |||||||| || ||||||||||||||||||
Sbjct: 250 cgcgcgcaagactacgtgtgcgggctgccg 279

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>ref|XM_480551.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1564

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 105 gccgccgacgagaagaggcacgaggcgggctacacc 140
           ||||||||||||||| |||||||||| | |||||||
Sbjct: 902 gccgccgacgagaagcggcacgaggccgcctacacc 937

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 105     gccgccgacgagaagaggcacgaggcgggctacacc 140
               ||||||||||||||| |||||||||| | |||||||
Sbjct: 5746181 gccgccgacgagaagcggcacgaggccgcctacacc 5746146



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 64/77 (83%), Gaps = 3/77 (3%)
 Strand = Plus / Minus

                                                                           
Query: 355     ggtggcgggtggcggagct---cgccgggctctctggagagggccgccgcgcgcaggagt 411
               ||||||| |||||||||||    || |||||||| || ||||| || ||||||| ||| |
Sbjct: 5781589 ggtggcgcgtggcggagctggaggcggggctctccggcgaggggcggcgcgcgcgggact 5781530

                                
Query: 412     acgtgtgcgggctgccg 428
               ||||||||| |||||||
Sbjct: 5781529 acgtgtgcgcgctgccg 5781513

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 149      cgccaagctcttcgaggtggaccc 172
                ||||||||||||||||||||||||
Sbjct: 18052396 cgccaagctcttcgaggtggaccc 18052373



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                            
Query: 7        cgttccaggagcgggcgaccttcgtctcccacgtgaacacggcg 50
                ||||||||||||| || |||| | |||||||||  |||||||||
Sbjct: 18052538 cgttccaggagcgcgccacctccatctcccacggcaacacggcg 18052495

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>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1003_F04
          Length = 139563

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 149    cgccaagctcttcgaggtggaccc 172
              ||||||||||||||||||||||||
Sbjct: 113990 cgccaagctcttcgaggtggaccc 113967



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                          
Query: 7      cgttccaggagcgggcgaccttcgtctcccacgtgaacacggcg 50
              ||||||||||||| || |||| | |||||||||  |||||||||
Sbjct: 114132 cgttccaggagcgcgccacctccatctcccacggcaacacggcg 114089

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>dbj|AP005416.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0094P23
          Length = 149341

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 105    gccgccgacgagaagaggcacgaggcgggctacacc 140
              ||||||||||||||| |||||||||| | |||||||
Sbjct: 100806 gccgccgacgagaagcggcacgaggccgcctacacc 100771



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 64/77 (83%), Gaps = 3/77 (3%)
 Strand = Plus / Minus

                                                                          
Query: 355    ggtggcgggtggcggagct---cgccgggctctctggagagggccgccgcgcgcaggagt 411
              ||||||| |||||||||||    || |||||||| || ||||| || ||||||| ||| |
Sbjct: 136214 ggtggcgcgtggcggagctggaggcggggctctccggcgaggggcggcgcgcgcgggact 136155

                               
Query: 412    acgtgtgcgggctgccg 428
              ||||||||| |||||||
Sbjct: 136154 acgtgtgcgcgctgccg 136138

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>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
           PAC clone:P0556A11
          Length = 138096

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 105 gccgccgacgagaagaggcacgaggcgggctacacc 140
           ||||||||||||||| |||||||||| | |||||||
Sbjct: 326 gccgccgacgagaagcggcacgaggccgcctacacc 291



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 64/77 (83%), Gaps = 3/77 (3%)
 Strand = Plus / Minus

                                                                         
Query: 355   ggtggcgggtggcggagct---cgccgggctctctggagagggccgccgcgcgcaggagt 411
             ||||||| |||||||||||    || |||||||| || ||||| || ||||||| ||| |
Sbjct: 35734 ggtggcgcgtggcggagctggaggcggggctctccggcgaggggcggcgcgcgcgggact 35675

                              
Query: 412   acgtgtgcgggctgccg 428
             ||||||||| |||||||
Sbjct: 35674 acgtgtgcgcgctgccg 35658

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>dbj|AK105852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G10, full
           insert sequence
          Length = 1564

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 105 gccgccgacgagaagaggcacgaggcgggctacacc 140
           ||||||||||||||| |||||||||| | |||||||
Sbjct: 902 gccgccgacgagaagcggcacgaggccgcctacacc 937

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>gb|AY107346.1| Zea mays PCO063977 mRNA sequence
          Length = 856

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 105 gccgccgacgagaagaggcacgaggcgg 132
           ||||||||||||||| ||||||||||||
Sbjct: 103 gccgccgacgagaagcggcacgaggcgg 130

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>ref|XM_480561.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1215

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 64/77 (83%), Gaps = 3/77 (3%)
 Strand = Plus / Plus

                                                                        
Query: 355  ggtggcgggtggcggagct---cgccgggctctctggagagggccgccgcgcgcaggagt 411
            ||||||| |||||||||||    || |||||||| || ||||| || ||||||| ||| |
Sbjct: 1019 ggtggcgcgtggcggagctggaggcggggctctccggcgaggggcggcgcgcgcgggact 1078

                             
Query: 412  acgtgtgcgggctgccg 428
            ||||||||| |||||||
Sbjct: 1079 acgtgtgcgcgctgccg 1095

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>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12
          Length = 340900

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 87     aagatctgcggcgtgattgccgccgac 113
              ||||||| |||||||||||||||||||
Sbjct: 243009 aagatctccggcgtgattgccgccgac 242983

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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 241     ccgacggccgcgacgccgaaagc 263
               |||||||||||||||||||||||
Sbjct: 1945527 ccgacggccgcgacgccgaaagc 1945549

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>gb|U09269.1|TAU09269 Thunbergia alata delta6-palmitoyl-acyl carrier protein desaturase
            precursor mRNA, complete cds
          Length = 1259

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 390  gagggccgccgcgcgcaggagtacgtgtgcgggctgccg 428
            ||||||||| | |||||||| |||||||||||| |||||
Sbjct: 1049 gagggccgcagggcgcaggattacgtgtgcgggttgccg 1087

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>gb|AY104235.1| Zea mays PCO105183 mRNA sequence
          Length = 1780

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 9   ttccaggagcgggcgaccttcgtctcccacgtgaacac 46
           ||||| ||||||||||||||| |||| |||| ||||||
Sbjct: 926 ttccaagagcgggcgaccttcatctcacacgggaacac 963

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>gb|U07597.1|TAU07597 Thunbergia alata clone pTAD2 delta-9 stearoyl-acyl carrier protein
            desaturase precursor mRNA, complete cds
          Length = 1337

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 401  cgcgcaggagtacgtgtgcggg 422
            ||||||||||||||||||||||
Sbjct: 1083 cgcgcaggagtacgtgtgcggg 1104

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>ref|NM_190163.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1146

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 266 cctgttcgaccggttctccgccgtggcgcagcg 298
           |||||||||||  ||| ||||||||||||||||
Sbjct: 876 cctgttcgaccacttcgccgccgtggcgcagcg 908



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 105 gccgccgacgagaagaggcacgag 128
           ||||||||||||||| ||||||||
Sbjct: 721 gccgccgacgagaagcggcacgag 744

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>gb|AC160126.2| Mus musculus BAC clone RP23-295C1 from chromosome 13, complete sequence
          Length = 212570

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 130    cgggctacaccagggtgtccg 150
              |||||||||||||||||||||
Sbjct: 154721 cgggctacaccagggtgtccg 154701

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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 359   gcgggtggcggagctcgccgggctc 383
             |||||||||||||||||||| ||||
Sbjct: 50482 gcgggtggcggagctcgccgcgctc 50458

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>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster
          Length = 84985

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   cgaggtggaccccgacggcat 181
             |||||||||||||||||||||
Sbjct: 28278 cgaggtggaccccgacggcat 28258

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 266      cctgttcgaccggttctccgccgtggcgcagcg 298
                |||||||||||  ||| ||||||||||||||||
Sbjct: 38218738 cctgttcgaccacttcgccgccgtggcgcagcg 38218770



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 105      gccgccgacgagaagaggcacgag 128
                ||||||||||||||| ||||||||
Sbjct: 38218583 gccgccgacgagaagcggcacgag 38218606

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>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0018C10
          Length = 200183

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 266    cctgttcgaccggttctccgccgtggcgcagcg 298
              |||||||||||  ||| ||||||||||||||||
Sbjct: 137972 cctgttcgaccacttcgccgccgtggcgcagcg 138004



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 105    gccgccgacgagaagaggcacgag 128
              ||||||||||||||| ||||||||
Sbjct: 137817 gccgccgacgagaagcggcacgag 137840

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>dbj|AK120809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014E24, full
           insert sequence
          Length = 1399

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 266 cctgttcgaccggttctccgccgtggcgcagcg 298
           |||||||||||  ||| ||||||||||||||||
Sbjct: 942 cctgttcgaccacttcgccgccgtggcgcagcg 974



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 105 gccgccgacgagaagaggcacgag 128
           ||||||||||||||| ||||||||
Sbjct: 787 gccgccgacgagaagcggcacgag 810

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>dbj|AK101524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046O20, full
           insert sequence
          Length = 1349

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 266 cctgttcgaccggttctccgccgtggcgcagcg 298
           |||||||||||  ||| ||||||||||||||||
Sbjct: 950 cctgttcgaccacttcgccgccgtggcgcagcg 982



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 105 gccgccgacgagaagaggcacgag 128
           ||||||||||||||| ||||||||
Sbjct: 795 gccgccgacgagaagcggcacgag 818

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>dbj|AK059526.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-D03, full
           insert sequence
          Length = 1323

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 266 cctgttcgaccggttctccgccgtggcgcagcg 298
           |||||||||||  ||| ||||||||||||||||
Sbjct: 932 cctgttcgaccacttcgccgccgtggcgcagcg 964



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 105 gccgccgacgagaagaggcacgag 128
           ||||||||||||||| ||||||||
Sbjct: 777 gccgccgacgagaagcggcacgag 800

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>emb|CT010439.6| Mouse DNA sequence from clone RP23-26E8 on chromosome 13, complete
              sequence
          Length = 231247

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 130    cgggctacaccagggtgtccg 150
              |||||||||||||||||||||
Sbjct: 209295 cgggctacaccagggtgtccg 209275

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>gb|DQ058416.1| Rhizobium etli strain 8C-3 plasmid clone REB02, partial sequence
          Length = 190912

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   cgatctggtggagcacttcg 348
             ||||||||||||||||||||
Sbjct: 39769 cgatctggtggagcacttcg 39788

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>ref|XM_465876.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1247

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 7   cgttccaggagcgggcgaccttcgtctcccacgtgaacacggcg 50
           ||||||||||||| || |||| | |||||||||  |||||||||
Sbjct: 756 cgttccaggagcgcgccacctccatctcccacggcaacacggcg 799

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>gb|BT016658.1| Zea mays clone Contig491 mRNA sequence
          Length = 1406

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 105 gccgccgacgagaagaggcacgag 128
           ||||||||||||||| ||||||||
Sbjct: 793 gccgccgacgagaagcggcacgag 816

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>gb|BT018751.1| Zea mays clone EL01N0523A03.d mRNA sequence
          Length = 1015

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 105 gccgccgacgagaagaggcacgag 128
           ||||||||||||||| ||||||||
Sbjct: 526 gccgccgacgagaagcggcacgag 549

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>ref|NM_033513.1| Homo sapiens chromosome 19 open reading frame 20 (C19orf20), mRNA
          Length = 1926

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 tctggagagggccgccgcgc 403
           ||||||||||||||||||||
Sbjct: 775 tctggagagggccgccgcgc 794

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>gb|BC009520.1| Homo sapiens chromosome 19 open reading frame 20, mRNA (cDNA clone
           IMAGE:3637796), partial cds
          Length = 1069

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 tctggagagggccgccgcgc 403
           ||||||||||||||||||||
Sbjct: 718 tctggagagggccgccgcgc 737

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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 57     gccgggcagcacggcgaccaggcg 80
              |||| |||||||||||||||||||
Sbjct: 311364 gccgcgcagcacggcgaccaggcg 311341

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>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14
          Length = 348525

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     gccgggcagcacggcgaccaggcg 80
              |||| |||||||||||||||||||
Sbjct: 273541 gccgcgcagcacggcgaccaggcg 273564

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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 57     gccgggcagcacggcgaccaggcg 80
              |||| |||||||||||||||||||
Sbjct: 263099 gccgcgcagcacggcgaccaggcg 263076

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>dbj|AK126170.1| Homo sapiens cDNA FLJ44182 fis, clone THYMU2038369, highly  similar
           to Mus musculus GTRGEO22 (Gtrgeo22) mRNA
          Length = 1926

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 tctggagagggccgccgcgc 403
           ||||||||||||||||||||
Sbjct: 775 tctggagagggccgccgcgc 794

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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     cgcgctggcgcacgtcatgc 207
               ||||||||||||||||||||
Sbjct: 2000797 cgcgctggcgcacgtcatgc 2000816

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>gb|AC011531.7|AC011531 Homo sapiens chromosome 19 clone LLNLR-231G5, complete sequence
          Length = 36377

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 384  tctggagagggccgccgcgc 403
            ||||||||||||||||||||
Sbjct: 8861 tctggagagggccgccgcgc 8880

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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     gccggcgtgtacacggcgag 319
               ||||||||||||||||||||
Sbjct: 1639372 gccggcgtgtacacggcgag 1639353

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>dbj|AK069683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030N09, full
           insert sequence
          Length = 1241

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 7   cgttccaggagcgggcgaccttcgtctcccacgtgaacacggcg 50
           ||||||||||||| || |||| | |||||||||  |||||||||
Sbjct: 756 cgttccaggagcgcgccacctccatctcccacggcaacacggcg 799

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 173    cgacggcatagtgcgcgcgctggc 196
              ||||||||| ||||||||||||||
Sbjct: 727860 cgacggcatcgtgcgcgcgctggc 727883

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>gb|AY109739.1| Zea mays CL27608_1 mRNA sequence
          Length = 607

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 105 gccgccgacgagaagaggcacgag 128
           ||||||||||||||| ||||||||
Sbjct: 552 gccgccgacgagaagcggcacgag 529

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>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
             chivosazol biosynthetic gene cluster, complete sequence;
             and hypothetical protein gene, complete cds
          Length = 96547

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    gctcgccgggcagcacggcg 72
             ||||||||||||||||||||
Sbjct: 67534 gctcgccgggcagcacggcg 67515

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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 328     gcgatctggtggagcacttc 347
               ||||||||||||||||||||
Sbjct: 6946954 gcgatctggtggagcacttc 6946935

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>gb|AF020203.1| Pelargonium x hortorum stearoyl-ACP desaturase (pxh-A) mRNA,
           partial cds
          Length = 1001

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 153 aagctcttcgaggtggaccccgacggca 180
           |||||||||||| | |||||||||||||
Sbjct: 305 aagctcttcgagctcgaccccgacggca 332

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>dbj|AP006104.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10H09, TM0189,
             complete sequence
          Length = 92745

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 283   ccgccgtggcgcagcgtgccggcgtgtacacggcga 318
             |||||||||| |||||  ||||||||||||| ||||
Sbjct: 12175 ccgccgtggcacagcgcaccggcgtgtacaccgcga 12140


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,036,697
Number of Sequences: 3902068
Number of extensions: 2036697
Number of successful extensions: 44209
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 43541
Number of HSP's gapped (non-prelim): 667
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result