ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast63f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 69 2e-12
2FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 61 6e-10
3APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 34 0.072
4APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 33 0.21
5HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecith... 32 0.36
6TBX6_HUMAN (O95947) T-box transcription factor TBX6 (T-box prote... 32 0.47
7GCAT_AERHY (P10480) Phosphatidylcholine-sterol acyltransferase p... 29 2.3
8RPIA_SYNEL (Q8DJF2) Ribose-5-phosphate isomerase A (EC 5.3.1.6) ... 29 3.0
9YRRI_BACSU (O34472) Hypothetical UPF0118 protein yrrI 27 8.8
10GDE_RABIT (P35574) Glycogen debranching enzyme (Glycogen debranc... 27 8.8
11GDE_CANFA (Q2PQH8) Glycogen debranching enzyme (Glycogen debranc... 27 8.8

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 69.3 bits (168), Expect = 2e-12
 Identities = 35/69 (50%), Positives = 45/69 (65%)
 Frame = +2

Query: 185 FDRIFSFGDSLTDTGNFLLSVPDDFPDPARSLPYGQTFFGRPSGRYSDGRNLLDFFAEAF 364
           F  IF+FGDS +DTG    +     P      PYG+TFF R +GRYSDGR ++DF AE+F
Sbjct: 32  FPAIFNFGDSNSDTGGKAAAFYPLNP------PYGETFFHRSTGRYSDGRLIIDFIAESF 85

Query: 365 RLPFVPPYL 391
            LP++ PYL
Sbjct: 86  NLPYLSPYL 94



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 30/69 (43%), Positives = 42/69 (60%)
 Frame = +2

Query: 185 FDRIFSFGDSLTDTGNFLLSVPDDFPDPARSLPYGQTFFGRPSGRYSDGRNLLDFFAEAF 364
           F  IF+FGDS +DTG    +     P      P+G +FFG P+GRY DGR ++DF AE+ 
Sbjct: 28  FPAIFNFGDSNSDTGGLSAAFGQAGP------PHGSSFFGSPAGRYCDGRLVIDFIAESL 81

Query: 365 RLPFVPPYL 391
            LP++  +L
Sbjct: 82  GLPYLSAFL 90



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 34.3 bits (77), Expect = 0.072
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 194 IFSFGDSLTDTGNFLLSVPDDFPDPARSLPYGQTF-FGRPSGRYSDGRNLLDFFAEAFRL 370
           +F FGDS+ DTGN   +   D        PYG  F  G  +GR+S+GR   D+ ++   +
Sbjct: 126 VFFFGDSIFDTGN---NNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGV 182

Query: 371 -PFVPPYL 391
              VP Y+
Sbjct: 183 KEIVPAYV 190



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +2

Query: 194 IFSFGDSLTDTGNFLLSVPDDFPDPARS--LPYGQTF-FGRPSGRYSDGRNLLDFFAEAF 364
           +F FGDS+ DTGN      ++     +S   PYG  F F   +GR+S+G    D+ A+  
Sbjct: 205 VFFFGDSVFDTGN-----NNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYM 259

Query: 365 RL-PFVPPYL 391
            +   VP YL
Sbjct: 260 GVKEIVPAYL 269



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>HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecithin-dependent|
           haemolysin) (LDH) (Atypical phospholipase)
           (Phospholipase A2) (Lysophospholipase)
          Length = 418

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = +2

Query: 188 DRIFSFGDSLTDTGNFLLSVPDDFPDPARSLPYGQTFFGRPSGRYSDGRNLLDFFAEAFR 367
           +++ + GDSL+DTGN   +    FP+P        ++F    G +S+G    ++ A+A  
Sbjct: 145 NKVVALGDSLSDTGNIFNASQWRFPNP-------NSWF---LGHFSNGFVWTEYIAKAKN 194

Query: 368 LPFVPPYLGG 397
           LP     +GG
Sbjct: 195 LPLYNWAVGG 204



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>TBX6_HUMAN (O95947) T-box transcription factor TBX6 (T-box protein 6)|
          Length = 436

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +2

Query: 260 PDPARSLPYGQTFFGRPSGRYSDGRNLLDFFAEAFRLPFVPPYLGGGDF 406
           PD  RS PY   F   P G    G     + A    +PF P +L GG F
Sbjct: 374 PDSGRSAPYSAAFLDVPHGSGGSG-----YPAAPPAVPFAPHFLQGGPF 417



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>GCAT_AERHY (P10480) Phosphatidylcholine-sterol acyltransferase precursor (EC|
           2.3.1.43) (Glycerophospholipid-cholesterol
           acyltransferase) (GCAT)
          Length = 335

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +2

Query: 185 FDRIFSFGDSLTDTGNFLLSVPDDFPDPARSLPYGQTFFGRPSGRYSDGRNLLDFFAEAF 364
           F RI  FGDSL+DTG     +    P    S PY +       GR+S+G   L+     F
Sbjct: 25  FSRIVMFGDSLSDTGKMYSKMRGYLPS---SPPYYE-------GRFSNGPVWLEQLTNEF 74



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>RPIA_SYNEL (Q8DJF2) Ribose-5-phosphate isomerase A (EC 5.3.1.6)|
           (Phosphoriboisomerase A) (PRI)
          Length = 236

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 206 GDSLTDTGNFLLSVP-DDFPDPA 271
           G  +TD GNF+L V  DD PDPA
Sbjct: 172 GPVVTDQGNFVLDVRFDDIPDPA 194



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>YRRI_BACSU (O34472) Hypothetical UPF0118 protein yrrI|
          Length = 353

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +2

Query: 251 DDFPDPA-----RSLPYGQTFF-GRPSGRYSDGRNLLDFFAEAFRLPFVPPYL 391
           DD+PD       + +   + FF G   G  S  RN+LD+F  A  +PF+  Y+
Sbjct: 126 DDWPDGMHHRIDKMIRQTEAFFAGTIEGAISGIRNVLDYFLIAATIPFLVFYM 178



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>GDE_RABIT (P35574) Glycogen debranching enzyme (Glycogen debrancher) [Includes:|
            4-alpha-glucanotransferase (EC 2.4.1.25)
            (Oligo-1,4-1,4-glucantransferase);
            Amylo-alpha-1,6-glucosidase (EC 3.2.1.33)
            (Amylo-1,6-glucosidase) (Dextrin 6-alpha-D-glucosidase)]
          Length = 1555

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 311  SGRYSDGRNLLDFFAEAFRLPFVPPYLGGGDF 406
            +GRY + RN++  FA   R   +P  LG G +
Sbjct: 1137 TGRYLEARNIILAFAGTLRHGLIPNLLGEGTY 1168



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>GDE_CANFA (Q2PQH8) Glycogen debranching enzyme (Glycogen debrancher) [Includes:|
            4-alpha-glucanotransferase (EC 2.4.1.25)
            (Oligo-1,4-1,4-glucantransferase);
            Amylo-alpha-1,6-glucosidase (EC 3.2.1.33)
            (Amylo-1,6-glucosidase) (Dextrin 6-alpha-D-glucosidase)]
          Length = 1533

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 311  SGRYSDGRNLLDFFAEAFRLPFVPPYLGGGDF 406
            +GRY + RN++  FA   R   +P  LG G +
Sbjct: 1115 TGRYLEARNIILAFAGTLRHGLIPNLLGEGTY 1146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,243,107
Number of Sequences: 219361
Number of extensions: 531316
Number of successful extensions: 2191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2189
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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