ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63f10 |
|---|---|
| Clone Library Name | barley_pub |
>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 832 Score = 227 bits (579), Expect = 9e-60 Identities = 99/143 (69%), Positives = 118/143 (82%) Frame = +2 Query: 5 GSVYGGYENPKLTYDGHVKMWQGSNKISILSSAVGLPNDGNHFERWNVGVLGPVTVSGLN 184 G+ YG +NPKLTY G K+W GSNKISILS +VGLPN GNHFE WN GVLGPVT++GLN Sbjct: 509 GTAYGSLDNPKLTYSGSAKLWAGSNKISILSVSVGLPNVGNHFETWNTGVLGPVTLTGLN 568 Query: 185 TGKRDLSHQKWTYQVGLKGESLGLHTVTGSSSVEWGGPGNKQPLTWHKALFNAPAGSDPV 364 GKRDLS QKWTYQ+GL GE+L LH++TGSS+VEWG KQPLTW+K FNAP G++P+ Sbjct: 569 EGKRDLSLQKWTYQIGLHGETLSLHSLTGSSNVEWGEASQKQPLTWYKTFFNAPPGNEPL 628 Query: 365 ALDMGSMGKGQMWVNGHHVGRYW 433 ALDM +MGKGQ+W+NG +GRYW Sbjct: 629 ALDMNTMGKGQIWINGQSIGRYW 651
>BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) Length = 731 Score = 204 bits (518), Expect = 1e-52 Identities = 95/146 (65%), Positives = 115/146 (78%), Gaps = 3/146 (2%) Frame = +2 Query: 5 GSVYGGYENPKLTYDGHVKMWQGSNKISILSSAVGLPNDGNHFERWNVGVLGPVTVSGLN 184 G+VYG ENPKL++ +V + G NK+++LS +VGLPN G HFE WN GVLGP+T+ GLN Sbjct: 510 GTVYGSLENPKLSFSQNVNLRSGINKLALLSISVGLPNVGTHFETWNAGVLGPITLKGLN 569 Query: 185 TGKRDLSHQKWTYQVGLKGESLGLHTVTGSSSVEW-GGP--GNKQPLTWHKALFNAPAGS 355 +G D+S KWTY+ GLKGE+LGLHTVTGSSSVEW GP KQPLTW+KA FNAP G Sbjct: 570 SGTWDMSGWKWTYKTGLKGEALGLHTVTGSSSVEWVEGPSMAEKQPLTWYKATFNAPPGD 629 Query: 356 DPVALDMGSMGKGQMWVNGHHVGRYW 433 P+ALDMGSMGKGQ+W+NG VGR+W Sbjct: 630 APLALDMGSMGKGQIWINGQSVGRHW 655
>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) Length = 835 Score = 192 bits (488), Expect = 3e-49 Identities = 88/146 (60%), Positives = 112/146 (76%), Gaps = 3/146 (2%) Frame = +2 Query: 5 GSVYGGYENPKLTYDGHVKMWQGSNKISILSSAVGLPNDGNHFERWNVGVLGPVTVSGLN 184 G+VYG ENPKLT+ + + G NKIS+LS AVGLPN G HFE WN GVLGPV+++GLN Sbjct: 508 GTVYGSLENPKLTFSNGINLRAGVNKISLLSIAVGLPNVGPHFETWNAGVLGPVSLNGLN 567 Query: 185 TGKRDLSHQKWTYQVGLKGESLGLHTVTGSSSVEW---GGPGNKQPLTWHKALFNAPAGS 355 G RDL+ QKW Y+VGLKGE+L LH+++GS SVEW KQPL+W+K FNAP G+ Sbjct: 568 EGTRDLTWQKWFYKVGLKGEALSLHSLSGSPSVEWVEGSLVAQKQPLSWYKTTFNAPDGN 627 Query: 356 DPVALDMGSMGKGQMWVNGHHVGRYW 433 +P+ALDM +MGKGQ+W+NG +GR+W Sbjct: 628 EPLALDMNTMGKGQVWINGQSLGRHW 653
>BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.2.1.23)| (Lactase) (SR12 protein) Length = 731 Score = 182 bits (462), Expect = 3e-46 Identities = 83/144 (57%), Positives = 105/144 (72%) Frame = +2 Query: 5 GSVYGGYENPKLTYDGHVKMWQGSNKISILSSAVGLPNDGNHFERWNVGVLGPVTVSGLN 184 G YG P+LT+ VKM G N+IS+LS+ VGL N G HFER+N GVLGPVT+SGLN Sbjct: 518 GHAYGSLAKPQLTFSQKVKMTAGVNRISLLSAVVGLANVGWHFERYNQGVLGPVTLSGLN 577 Query: 185 TGKRDLSHQKWTYQVGLKGESLGLHTVTGSSSVEWGGPGNKQPLTWHKALFNAPAGSDPV 364 G RDL+ Q W+Y++G KGE ++ GSS V+WG P KQPL W+K F+AP G+DP+ Sbjct: 578 EGTRDLTWQYWSYKIGTKGEEQQVYNSGGSSHVQWGPPAWKQPLVWYKTTFDAPGGNDPL 637 Query: 365 ALDMGSMGKGQMWVNGHHVGRYWS 436 ALD+GSMGKGQ W+NG +GR+WS Sbjct: 638 ALDLGSMGKGQAWINGQSIGRHWS 661
>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 828 Score = 100 bits (250), Expect = 1e-21 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 7/137 (5%) Frame = +2 Query: 44 YDGHVKMWQGSNKISILSSAVGLPNDGNHFERWNVGVLGPVTVSGLN---TGKRDLSHQK 214 ++ V + G+N +++LS +VGL N G FE G+ GPV + G T ++DLS + Sbjct: 527 FEKKVNLVHGTNHLALLSVSVGLQNYGPFFESGPTGINGPVKLVGYKGDETIEKDLSKHQ 586 Query: 215 WTYQVGLKGESLGLHTVTGSSSVEWGGPGNKQP----LTWHKALFNAPAGSDPVALDMGS 382 W Y++GL G + L ++ + K P L+W+KA F AP G DPV +D+ Sbjct: 587 WDYKIGLNGFNHKLFSMKSAGHHHRKWSTEKLPADRMLSWYKANFKAPLGKDPVIVDLNG 646 Query: 383 MGKGQMWVNGHHVGRYW 433 +GKG++W+NG +GRYW Sbjct: 647 LGKGEVWINGQSIGRYW 663
>BGAL_XANMN (P48982) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 598 Score = 35.4 bits (80), Expect = 0.063 Identities = 32/127 (25%), Positives = 51/127 (40%) Frame = +2 Query: 56 VKMWQGSNKISILSSAVGLPNDGNHFERWNVGVLGPVTVSGLNTGKRDLSHQKWTYQVGL 235 V++ G + + +L G N G G++ PV + S Q +Q Sbjct: 455 VEIPAGQHTLDVLVENSGRINYGTRMADGRAGLVDPVLLD---------SQQLTGWQ--- 502 Query: 236 KGESLGLHTVTGSSSVEWGGPGNKQPLTWHKALFNAPAGSDPVALDMGSMGKGQMWVNGH 415 + L T S W G + P +H+ +D LDM + GKG W NG Sbjct: 503 ---AFPLPMRTPDSIRGWTGKAVQGP-AFHRGTLRIGTPTDTY-LDMRAFGKGFAWANGV 557 Query: 416 HVGRYWS 436 ++GR+W+ Sbjct: 558 NLGRHWN 564
>BGAL_MOUSE (P23780) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 647 Score = 34.7 bits (78), Expect = 0.11 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Frame = +2 Query: 317 TWHKALFNAPAGSDPVALD----MGSMGKGQMWVNGHHVGRYW 433 T++ F+ P+G + D KGQ+W+NG ++GRYW Sbjct: 552 TFYVGNFSIPSGIPDLPQDTFIQFPGWSKGQVWINGFNLGRYW 594
>BGAL_HUMAN (P16278) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 677 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Frame = +2 Query: 257 HTVTGSSSVEWGGPGNKQPL-TWHKALFNAPAGSDPVALD----MGSMGKGQMWVNGHHV 421 H +G W + L ++ F+ P+G + D KGQ+W+NG ++ Sbjct: 529 HRDSGHHDEAWAHNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNL 588 Query: 422 GRYW 433 GRYW Sbjct: 589 GRYW 592
>BGAL_MACFA (Q60HF6) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 682 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Frame = +2 Query: 257 HTVTGSSSVEWGGPGNKQPL-TWHKALFNAPAGSDPVALD----MGSMGKGQMWVNGHHV 421 H +G W + L ++ F+ P+G + D KGQ+W+NG ++ Sbjct: 529 HRDSGRHDEAWAHSSSNYTLPAFYVGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNL 588 Query: 422 GRYW 433 GRYW Sbjct: 589 GRYW 592
>BGAM_HUMAN (P16279) Beta-galactosidase-related protein precursor| (Beta-galactosidase-like protein) (S-Gal) (Elastin-binding protein) (EBP) Length = 546 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Frame = +2 Query: 257 HTVTGSSSVEWGGPGNKQPL-TWHKALFNAPAGSDPVALD----MGSMGKGQMWVNGHHV 421 H +G W + L ++ F+ P+G + D KGQ+W+NG ++ Sbjct: 398 HRDSGHHDEAWAHNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNL 457 Query: 422 GRYW 433 GRYW Sbjct: 458 GRYW 461
>BGAL_FELCA (O19015) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 669 Score = 33.5 bits (75), Expect = 0.24 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%) Frame = +2 Query: 335 FNAPAGSDPVALD----MGSMGKGQMWVNGHHVGRYW 433 F+ P+G + D KGQ+W+NG ++GRYW Sbjct: 558 FSIPSGIPDLPQDTFIQFSGWTKGQVWINGFNLGRYW 594
>BGAL_CANFA (Q9TRY9) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 668 Score = 32.7 bits (73), Expect = 0.41 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +2 Query: 389 KGQMWVNGHHVGRYW 433 KGQ+W+NG ++GRYW Sbjct: 579 KGQVWINGFNLGRYW 593
>ZN295_HUMAN (Q9ULJ3) Zinc finger protein 295 (Zinc finger and BTB| domain-containing protein 21) Length = 1066 Score = 32.0 bits (71), Expect = 0.70 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Frame = +2 Query: 8 SVYGGYENPKLTYDGHVKMWQGSNKISILSSAVGL--PNDGNHFERWNVGVLGPVTVSGL 181 SV E P L + + QG ++ + S +GL P+ G+ ++ GP+ S L Sbjct: 281 SVCSSSETPYLLKETNKGNGQGEDRNLLYYSKLGLVIPSSGSGSGNQSIDRSGPLVKSLL 340 Query: 182 NTGKRDLSHQKWTYQVGLKGESLGLHTVTGSSSVEWGGPGN 304 +R LS QV + S+ L + GSSSV PGN Sbjct: 341 ---RRSLSMDS---QVPVYSPSIDLKSSQGSSSVSSDAPGN 375
>DCR1A_HUMAN (Q6PJP8) DNA cross-link repair 1A protein (hSNM1) (hSNM1A)| Length = 1040 Score = 31.6 bits (70), Expect = 0.91 Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 3/82 (3%) Frame = -3 Query: 396 CPFPMLPMSSATGSLPAGALNKALCHVSGCLLPGPPHSTEELPVTVWRPSDSPFRPT*YV 217 CP +P SS G P HV CL PP S E P + S PF Y Sbjct: 122 CPNCQMPFSSLIGQTPRW-------HVFECL-DSPPRSETECPDGLLCTSTIPFHYKRYT 173 Query: 216 HF*WLRSL---FPVFSPETVTG 160 HF +S P SP +G Sbjct: 174 HFLLAQSRAGDHPFSSPSPASG 195
>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide| hydrolase) Length = 869 Score = 30.8 bits (68), Expect = 1.6 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 4/100 (4%) Frame = +2 Query: 101 AVGLPNDGNHFERWNVGVLGPVTVSGLNTGKRDLSHQKWTYQVGLKGESLGLHTVTGS-S 277 A G DG H+ WN P + L G DL K+ + G + +L L+ G+ + Sbjct: 164 ASGELEDGRHWVEWNDPFPKPSYLFALVAGDFDLLQDKFITKSG-REVALELYVDRGNLN 222 Query: 278 SVEWGGPGNKQPLTWHKALFNAPAGSD---PVALDMGSMG 388 W K+ + W + FN D VA+D +MG Sbjct: 223 RATWAMESLKKAMKWDEDRFNLEYDLDIYMIVAVDFFNMG 262
>DXS_BACTN (Q8A0C2) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 647 Score = 30.8 bits (68), Expect = 1.6 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 8/92 (8%) Frame = +2 Query: 125 NHFERWNVGVLGPVTVSGLNTGKRDLSHQKWTYQVGLKGES-LGLHTVTGSS-------S 280 N FE N+ GP+ + R L K LKG L LHT+ G + Sbjct: 246 NIFEGMNIRYFGPIDGHDIKNLSRVLRDIK-----DLKGPKILHLHTIKGKGFAPAEKHA 300 Query: 281 VEWGGPGNKQPLTWHKALFNAPAGSDPVALDM 376 EW PG P+T + + N G P+ D+ Sbjct: 301 TEWHAPGKFDPVTGERFVANT-EGMPPLFQDV 331
>MINC_XYLFA (Q9PDQ7) Probable septum site-determining protein minC| Length = 238 Score = 30.0 bits (66), Expect = 2.7 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = +2 Query: 71 GSNKISILSSAVGLP---NDGNHFERWNVGVLGPVTVSGLNTGK 193 G+N+I +LS +GLP H+ER V P + +NTG+ Sbjct: 90 GTNEIDLLSQQLGLPLLSKFRAHYERQEVAAPPPQSTPPINTGR 133
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = -3 Query: 303 LPGPPHS-TEELPVTVWRPSDSPFRPT*YVHF*WLRSLFPVFSPETVTGPRTPTF 142 LP PPH+ TE++ + SDSP S+ P SPE++ G P F Sbjct: 4405 LPTPPHNQTEDVRMESDEDSDSP------------DSIVPASSPESILGEEAPRF 4447
>LLDD_XANCP (Q8PE75) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 386 Score = 29.3 bits (64), Expect = 4.5 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Frame = +2 Query: 83 ISILSSAVGLPNDGNHFERWNVGVLGPVTVSGLNTGKRDLSHQKWTYQVGLKGESLGLHT 262 ++ L V +P G + + G+ GP + L + ++H +W + VGL G+ L Sbjct: 149 VTTLVFTVDMPTPGARYRDAHSGMSGPN--ASLRRMLQAMTHPRWAWDVGLLGKPHDL-- 204 Query: 263 VTGSSSVEWGGP-GNKQPLTWHKALFN 340 G+ S G P G + + W A F+ Sbjct: 205 --GNISTYRGSPTGLQDYIGWLAANFD 229
>LLDD_XANC8 (Q4V0H2) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 386 Score = 29.3 bits (64), Expect = 4.5 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Frame = +2 Query: 83 ISILSSAVGLPNDGNHFERWNVGVLGPVTVSGLNTGKRDLSHQKWTYQVGLKGESLGLHT 262 ++ L V +P G + + G+ GP + L + ++H +W + VGL G+ L Sbjct: 149 VTTLVFTVDMPTPGARYRDAHSGMSGPN--ASLRRMLQAMTHPRWAWDVGLLGKPHDL-- 204 Query: 263 VTGSSSVEWGGP-GNKQPLTWHKALFN 340 G+ S G P G + + W A F+ Sbjct: 205 --GNISTYRGSPTGLQDYIGWLAANFD 229
>LLDD_HAEIN (P46454) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = +2 Query: 86 SILSSAVGLPNDGNHFERWNVGVLGPVTVSGLNTGKRDLSHQKWTYQVGLKGESLGLHTV 265 S L V +P G + + G+ GP + + +H W Y VG+KG+ L V Sbjct: 150 STLVFTVDMPTPGARYRDMHSGMSGPY--KEIRRVLQGFTHPFWAYDVGIKGKPHTLGNV 207 Query: 266 T 268 + Sbjct: 208 S 208
>LLDD_HAEI8 (Q4QJK8) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = +2 Query: 86 SILSSAVGLPNDGNHFERWNVGVLGPVTVSGLNTGKRDLSHQKWTYQVGLKGESLGLHTV 265 S L V +P G + + G+ GP + + +H W Y VG+KG+ L V Sbjct: 150 STLVFTVDMPTPGARYRDMHSGMSGPY--KEIRRVLQGFTHPFWAYDVGIKGKPHTLGNV 207 Query: 266 T 268 + Sbjct: 208 S 208
>LLDD_XANAC (Q8PR33) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 388 Score = 28.5 bits (62), Expect = 7.7 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Frame = +2 Query: 83 ISILSSAVGLPNDGNHFERWNVGVLGPVTVSGLNTGKRDLSHQKWTYQVGLKGESLGLHT 262 ++ L V +P G + + G+ GP + L + ++H +W + VGL G+ L Sbjct: 149 VTTLVFTVDMPTPGARYRDAHSGMSGPN--ASLRRMLQAVTHPRWAWDVGLLGKPHDL-- 204 Query: 263 VTGSSSVEWGGP-GNKQPLTWHKALFN 340 G+ S G P G + + W A F+ Sbjct: 205 --GNISAYRGSPTGLQDYIGWLGANFD 229
>TREA_PSEAE (Q9I165) Periplasmic trehalase precursor (EC 3.2.1.28)| (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) Length = 545 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +2 Query: 251 GLHTVTGSSSVEWGGPGNKQPLTWHKALFNAPAGSDPVALDMG 379 GL T T +S +W P PL W G D +A D+G Sbjct: 442 GLATTTRASGQQWDEPNGWAPLQWVAVQGLRAYGRDALAEDIG 484
>HOSC_YEAST (P48570) Homocitrate synthase, cytosolic isozyme (EC 2.3.3.14)| Length = 428 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -2 Query: 229 DLICPFLMAEVSLPRV*PGDGHRPEDADVPPLEMVPVVRK 110 D I AEVS P+V ++ D+DVP L +P ++ Sbjct: 384 DSIIKNFHAEVSTPQVLSAKKNKKNDSDVPELATIPAAKR 423 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,264,538 Number of Sequences: 219361 Number of extensions: 1441230 Number of successful extensions: 4167 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4021 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4161 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
