>TIM17_ARATH (Q9SP35) Mitochondrial import inner membrane translocase subunit|
           Tim17
          Length = 243

 Score =  159 bits (403), Expect = 2e-39
 Identities = 73/99 (73%), Positives = 78/99 (78%)
 Frame = +3

Query: 117 MGTPETSREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNGERLLGGAQQVRLNAP 296
           MGTPETSREPCPDRILDD            S FHF+KGTYNSP G R +GG Q V +NAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAP 60

Query: 297 RVGGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
           R GGSFAVWGGLFS FDCTMV++RQKEDPWNSIIAGAAT
Sbjct: 61  RTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAAT 99

>TI17B_HUMAN (O60830) Mitochondrial import inner membrane translocase subunit|
           Tim17-B
          Length = 172

 Score =  102 bits (255), Expect = 3e-22
 Identities = 51/97 (52%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
 Frame = +3

Query: 129 ETSREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNG--ERLLGGAQQVRLNAPRV 302
           E +REPCP RI+DD             +F  +KG  N+P G   RL G A  VR+ AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQI 62

Query: 303 GGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
           GGSFAVWGGLFS  DC +V +R KEDPWNSI +GA T
Sbjct: 63  GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALT 99

>TI17A_HUMAN (Q99595) Mitochondrial import inner membrane translocase subunit|
           Tim17-A (Inner membrane preprotein translocase Tim17a)
          Length = 171

 Score =  102 bits (253), Expect = 5e-22
 Identities = 52/97 (53%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
 Frame = +3

Query: 129 ETSREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNG--ERLLGGAQQVRLNAPRV 302
           E +REPCP RI+DD             IF  +KG  NSP G   RL G    ++  AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQL 62

Query: 303 GGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
           GGSFAVWGGLFS  DC+MV VR KEDPWNSI +GA T
Sbjct: 63  GGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALT 99

>TI17A_MOUSE (Q9Z0V8) Mitochondrial import inner membrane translocase subunit|
           Tim17-A (Inner membrane preprotein translocase Tim17a)
          Length = 171

 Score =  101 bits (251), Expect = 8e-22
 Identities = 51/97 (52%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +3

Query: 129 ETSREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNG--ERLLGGAQQVRLNAPRV 302
           E +REPCP RI+DD             IF   KG  NSP G   RL G    ++  AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQL 62

Query: 303 GGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
           GGSFAVWGGLFS  DC+MV +R KEDPWNSI +GA T
Sbjct: 63  GGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALT 99

>TI17A_RAT (O35092) Mitochondrial import inner membrane translocase subunit|
           Tim17-A (Inner membrane preprotein translocase Tim17a)
          Length = 171

 Score =  100 bits (248), Expect = 2e-21
 Identities = 51/97 (52%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
 Frame = +3

Query: 129 ETSREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNG--ERLLGGAQQVRLNAPRV 302
           E +REPCP RI+DD             IF   KG  NSP G   RL G    ++  AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQL 62

Query: 303 GGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
           GGSFAVWGGLFS  DC MV +R KEDPWNSI +GA T
Sbjct: 63  GGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALT 99

>TI17B_MOUSE (Q9Z0V7) Mitochondrial import inner membrane translocase subunit|
           Tim17-B
          Length = 172

 Score = 99.4 bits (246), Expect = 3e-21
 Identities = 49/97 (50%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +3

Query: 129 ETSREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNG--ERLLGGAQQVRLNAPRV 302
           E +REPCP RI+DD             +F  +KG  N+P G   R  G    VR+ AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQI 62

Query: 303 GGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
           GGSFAVWGGLFS  DC +V +R KEDPWNSI +GA T
Sbjct: 63  GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALT 99

>TI17D_DROME (Q9VN97) Probable mitochondrial import inner membrane translocase|
           subunit Tim17 4
          Length = 224

 Score = 99.0 bits (245), Expect = 4e-21
 Identities = 47/97 (48%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
 Frame = +3

Query: 129 ETSREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNGER--LLGGAQQVRLNAPRV 302
           E +R+PCP RI++D            S+F +LKG  N+P+G R  L GG + VRL  P +
Sbjct: 2   EYNRQPCPIRIVEDCGCAFMMGTMGGSLFQYLKGFRNAPSGLRRGLHGGIESVRLRTPAI 61

Query: 303 GGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
            GSFA+WG  FS  DC MV  RQ+ED WN+I++GAAT
Sbjct: 62  AGSFAIWGATFSTVDCVMVSYRQREDSWNAIVSGAAT 98

>TI17C_DROME (Q9VGA2) Probable mitochondrial import inner membrane translocase|
           subunit Tim17 3
          Length = 222

 Score = 98.6 bits (244), Expect = 5e-21
 Identities = 47/97 (48%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +3

Query: 129 ETSREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNG--ERLLGGAQQVRLNAPRV 302
           E +R+PCP RI++D            S+F FLKG  N+P G   RL GG   V++  P +
Sbjct: 2   EYNRQPCPIRIVEDCGCAFMMGTIGGSLFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPSI 61

Query: 303 GGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
            GSFAVWG  FS  DC +V  RQ+ED WNSI++GAAT
Sbjct: 62  AGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAAT 98

>TIM17_SCHPO (P87130) Mitochondrial import inner membrane translocase subunit|
           tim17 (Mitochondrial protein import protein 2)
          Length = 164

 Score = 97.1 bits (240), Expect = 1e-20
 Identities = 45/99 (45%), Positives = 61/99 (61%)
 Frame = +3

Query: 117 MGTPETSREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNGERLLGGAQQVRLNAP 296
           M + + +R+PCP  IL+D            +I+H +KG  NSP GE+ +      +  AP
Sbjct: 1   MASADHTRDPCPYVILNDFGAAFSMGTIGGAIWHSIKGWRNSPPGEKRISAIAAAKTRAP 60

Query: 297 RVGGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
            +GG+F VWGGLFS FDC +  VR+KEDPWN+IIAG  T
Sbjct: 61  VLGGNFGVWGGLFSTFDCAVKGVRRKEDPWNAIIAGFFT 99

>TIM17_YEAST (P39515) Mitochondrial import inner membrane translocase subunit|
           TIM17 (Mitochondrial protein import protein 2)
           (Mitochondrial inner membrane protein MIM17)
          Length = 158

 Score = 95.5 bits (236), Expect = 4e-20
 Identities = 45/93 (48%), Positives = 58/93 (62%)
 Frame = +3

Query: 135 SREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNGERLLGGAQQVRLNAPRVGGSF 314
           SR+PCP  IL+D             ++H +KG  NSP GER  G    ++  AP +GG+F
Sbjct: 6   SRDPCPIVILNDFGGAFAMGAIGGVVWHGIKGFRNSPLGERGSGAMSAIKARAPVLGGNF 65

Query: 315 AVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
            VWGGLFS FDC +  VR++EDPWN+IIAG  T
Sbjct: 66  GVWGGLFSTFDCAVKAVRKREDPWNAIIAGFFT 98

>TI17A_DROME (Q9VNA0) Probable mitochondrial import inner membrane translocase|
           subunit Tim17 1
          Length = 179

 Score = 95.5 bits (236), Expect = 4e-20
 Identities = 47/97 (48%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +3

Query: 129 ETSREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNG--ERLLGGAQQVRLNAPRV 302
           E  REPCP RI++D              F  +KG  N+P+G   RL GG   VR  +  V
Sbjct: 3   EYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLV 62

Query: 303 GGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
           GG+FAVWG  FSA DC++V+ R+KEDPWN+II+GA T
Sbjct: 63  GGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATT 99

>TIM17_NEUCR (P59670) Mitochondrial import inner membrane translocase subunit|
           tim-17
          Length = 155

 Score = 94.7 bits (234), Expect = 7e-20
 Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
 Frame = +3

Query: 135 SREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNGERLLGGAQQVRLNAPRVGGSF 314
           +R+PCP  IL+D            +I+H +KG  NSP GER +G    +++ AP +GG+F
Sbjct: 4   TRDPCPWVILNDFGGAFAMGAIGGTIWHGIKGFRNSPYGERRIGAITAIKMRAPALGGNF 63

Query: 315 AVWGGLFSAFDCTMVFVR-QKEDPWNSIIAGAAT 413
            VWGGLFS FDC +  +R  KEDPWNSI+AG  T
Sbjct: 64  GVWGGLFSTFDCAIKGLRNHKEDPWNSILAGFFT 97

>TIM17_CAEEL (O44477) Probable mitochondrial import inner membrane translocase|
           subunit Tim17
          Length = 181

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 41/95 (43%), Positives = 56/95 (58%)
 Frame = +3

Query: 129 ETSREPCPDRILDDXXXXXXXXXXXXSIFHFLKGTYNSPNGERLLGGAQQVRLNAPRVGG 308
           E +REPCP RI DD            SIF    G  N+  G++L+G  ++VR+ +   G 
Sbjct: 3   EYTREPCPYRIGDDIGSAFAMGLVGGSIFQAFGGYKNAAKGKKLVGMMREVRMRSTLTGV 62

Query: 309 SFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
            FA WGG+FS  DC +V +R+KEDP NSI++G  T
Sbjct: 63  QFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLT 97

>TIM22_YARLI (Q6BZY4) Mitochondrial import inner membrane translocase subunit|
           TIM22
          Length = 189

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 309 SFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
           +F   GG+FS  +C +  +R K D WN + AG  T
Sbjct: 110 NFGFIGGVFSGTECCIESLRAKNDIWNGVAAGCLT 144

>TIM22_MOUSE (Q9CQ85) Mitochondrial import inner membrane translocase subunit|
           Tim22
          Length = 194

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 225 KGTYNSPNGERLLGGAQQVRLNAPRVGGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAG 404
           K  Y +P  + +L    Q  ++  +   +FA+ G +FS  +C +   R K D  NS+I+G
Sbjct: 103 KDPYRTPTAKEVLKDMGQRGMSYAK---NFAIVGAMFSCTECLVESYRGKSDWKNSVISG 159

Query: 405 AAT 413
             T
Sbjct: 160 CIT 162

>TIM22_XENTR (Q5M7K0) Mitochondrial import inner membrane translocase subunit|
           Tim22
          Length = 186

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 225 KGTYNSPNGERLLGGAQQVRLNAPRVGGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAG 404
           K  Y +P  + +L    Q  ++  +   +FA+ G +FS  +C +   R K D  NS+I+G
Sbjct: 95  KDPYRTPTAKEVLKDMGQRGMSYAK---NFAIVGAMFSCTECLVESYRGKSDWKNSVISG 151

Query: 405 AAT 413
             T
Sbjct: 152 CIT 154

>TIM22_RAT (Q9JKW1) Mitochondrial import inner membrane translocase subunit|
           Tim22
          Length = 192

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 225 KGTYNSPNGERLLGGAQQVRLNAPRVGGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAG 404
           K  Y +P    +L    Q  ++  +   +FA+ G +FS  +C +   R K D  NS+I+G
Sbjct: 101 KDPYRTPTAREVLKDMGQRGMSYAK---NFAIVGAMFSCTECLVESYRGKSDWKNSVISG 157

Query: 405 AAT 413
             T
Sbjct: 158 CIT 160

>TIM22_BOVIN (Q5BIN4) Mitochondrial import inner membrane translocase subunit|
           Tim22
          Length = 194

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 225 KGTYNSPNGERLLGGAQQVRLNAPRVGGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAG 404
           K  Y +P    +L    Q  ++  +   +FA+ G +FS  +C +   R K D  NS+I+G
Sbjct: 103 KDPYRTPTAREVLKDMGQRGMSYAK---NFAIVGAMFSCTECLVESYRGKSDWKNSVISG 159

Query: 405 AAT 413
             T
Sbjct: 160 CIT 162

>TIM22_HUMAN (Q9Y584) Mitochondrial import inner membrane translocase subunit|
           Tim22 (Testis-expressed sequence 4)
          Length = 194

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 225 KGTYNSPNGERLLGGAQQVRLNAPRVGGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAG 404
           K  Y +P  + +L    Q  ++  +   +FA+ G +FS  +C +   R   D  NS+I+G
Sbjct: 103 KDPYRTPTAKEVLKDMGQRGMSYAK---NFAIVGAMFSCTECLIESYRGTSDWKNSVISG 159

Query: 405 AAT 413
             T
Sbjct: 160 CIT 162

>TIM22_XENLA (Q5U4U5) Mitochondrial import inner membrane translocase subunit|
           Tim22
          Length = 184

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 309 SFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
           +FA+ G +FS  +C +   R K D  NS+++G  T
Sbjct: 118 NFAIVGAMFSCTECLVESYRGKSDWKNSVMSGCIT 152

>HT1_ARATH (Q2MHE4) Serine/threonine-protein kinase HT1 (EC 2.7.11.1) (High|
           leaf temperature protein 1)
          Length = 390

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -3

Query: 400 AMMEFQGSSFWRTKTMVQSKAEKRPPQTAKLPPTRGAFKRTCWAP-PSRRSPLGEL*VPL 224
           A++ FQG +  +    V  K E RPP  A   P      + CW+  PS+R     +   L
Sbjct: 282 ALLPFQGMTPVQAAFAVAEKNE-RPPLPASCQPALAHLIKRCWSENPSKRPDFSNIVAVL 340

Query: 223 RKW 215
            K+
Sbjct: 341 EKY 343

>AAPK2_PONPY (Q5RD00) 5'-AMP-activated protein kinase catalytic subunit alpha-2|
           (EC 2.7.11.1) (AMPK alpha-2 chain)
          Length = 552

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = -2

Query: 218 MEDGAAH-----RPHPERAANVVEDAVRARLP 138
           M+D A H     +PHPER   ++ D+ +AR P
Sbjct: 352 MDDSAMHIPPGLKPHPERMPPLIADSPKARCP 383

>AAPK2_PIG (Q28948) 5'-AMP-activated protein kinase catalytic subunit alpha-2|
           (EC 2.7.11.1) (AMPK alpha-2 chain)
          Length = 552

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = -2

Query: 218 MEDGAAH-----RPHPERAANVVEDAVRARLP 138
           M+D A H     +PHPER   ++ D+ +AR P
Sbjct: 352 MDDSAMHIPPGLKPHPERMPPLIADSPKARCP 383

>AAPK2_HUMAN (P54646) 5'-AMP-activated protein kinase catalytic subunit alpha-2|
           (EC 2.7.11.1) (AMPK alpha-2 chain)
          Length = 552

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = -2

Query: 218 MEDGAAH-----RPHPERAANVVEDAVRARLP 138
           M+D A H     +PHPER   ++ D+ +AR P
Sbjct: 352 MDDSAMHIPPGLKPHPERMPPLIADSPKARCP 383

>THI2_YEAST (P38141) Thiamine biosynthesis regulatory protein|
          Length = 450

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 355 MVQSKAEKRPPQTA---KLPPTRGAFKRTCWA 269
           MV SK ++R  + A   K+PPT+G     CWA
Sbjct: 1   MVNSKRQQRSKKVASSSKVPPTKGRTFTGCWA 32

>TIM23_SCHPO (Q9USM7) Mitochondrial import inner membrane translocase subunit|
           tim23
          Length = 210

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 255 RLLGGAQQVRLNAPRVGGSFAVWGGLFSAFDCTMVFVRQKEDPWNSIIAGAAT 413
           RL G    V    P VG S  V   +++  +  + + RQK    NS+ AGA T
Sbjct: 119 RLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENSVAAGALT 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,039,895
Number of Sequences: 219361
Number of extensions: 589388
Number of successful extensions: 2248
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2239
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)