ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63e11 |
|---|---|
| Clone Library Name | barley_pub |
>ZN363_MOUSE (Q9CR50) RING finger and CHY zinc finger domain-containing protein| 1 (Zinc finger protein 363) (CH-rich-interacting match with PLAG1) (Androgen receptor N-terminal-interacting protein) Length = 261 Score = 62.4 bits (150), Expect = 4e-10 Identities = 27/79 (34%), Positives = 39/79 (49%) Frame = +3 Query: 168 GQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISK 347 G +L GCEHY R C ++APCC +++ CR CH D + H + R ++ + Sbjct: 9 GVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKE 59 Query: 348 VICSLCNXEQDVQKNCSGC 404 V C C Q Q+ C C Sbjct: 60 VQCINCEKLQHAQQTCEDC 78
>ZN363_HUMAN (Q96PM5) RING finger and CHY zinc finger domain-containing protein| 1 (Zinc finger protein 363) (CH-rich-interacting match with PLAG1) (Androgen receptor N-terminal-interacting protein) Length = 261 Score = 61.2 bits (147), Expect = 9e-10 Identities = 25/71 (35%), Positives = 38/71 (53%) Frame = +3 Query: 192 QHGCEHYTRRCRIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKVICSLCNX 371 Q GCEHY R C ++APCC +++ CR CH+ ++ H + R ++ +V C C Sbjct: 17 QRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNED---------HQLDRFKVKEVQCINCEK 67 Query: 372 EQDVQKNCSGC 404 Q Q+ C C Sbjct: 68 IQHAQQTCEEC 78
>TRPA_MAIZE (P42390) Indole-3-glycerol phosphate lyase, chloroplast precursor| (EC 4.1.2.-) (Indole synthase) (Tryptophan synthase alpha chain) (EC 4.2.1.20) (Benzoxazineless 1) Length = 347 Score = 35.4 bits (80), Expect = 0.055 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Frame = -2 Query: 231 VSCTSSCNARSRAA---LPPNPSVRPSPAFVPPRGDAAPPEERKEAGVRESLAAL 76 V T++ AR+ AA +P P P+PA VPP+ AA P ER+ V +++AAL Sbjct: 44 VVVTTTTTARAAAAAVTVPAAPPQAPAPAPVPPKQAAA-PAERRSRPVSDTMAAL 97
>HOT13_KLULA (Q6CIK2) Helper of Tim protein 13| Length = 114 Score = 34.3 bits (77), Expect = 0.12 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = +3 Query: 201 CEHYTRRCRI---RAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKVICSLCNX 371 CEH+ + R CC + C CH + L V +R++I + VIC +C Sbjct: 17 CEHWHGPLDVIALRFKCCNGYYACYECHQE----LVPHVTERYNINDETVPLVICGVCKL 72 Query: 372 E 374 E Sbjct: 73 E 73
>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) Length = 889 Score = 32.3 bits (72), Expect = 0.46 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = -2 Query: 192 ALPPNPSVRPSPAFVPPRGDAAPPEERKEAGVRESL 85 A PP P P+P PPR +A PPE E G R L Sbjct: 42 APPPGPG--PAPPQHPPRAEALPPEAADEGGPRGRL 75
>NIFA_AZOBR (P30667) Nif-specific regulatory protein| Length = 625 Score = 32.0 bits (71), Expect = 0.61 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -2 Query: 216 SCNARSRAALPPNPSVRPSPAFVPPRGDAAPPEERKEAGVRESL 85 +C SRA LPP + PSPA PP P +E + +R+ L Sbjct: 544 ACPCPSRAPLPPQ-APPPSPAAAPPPAAEVPLDEPESGSLRDRL 586
>CENPB_HUMAN (P07199) Major centromere autoantigen B (Centromere protein B)| (CENP-B) Length = 599 Score = 32.0 bits (71), Expect = 0.61 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 231 VSCTSSCNARSRAALPPNPSVRPSPAFVPPRG 136 VSC+ AR+R A P P+ SPA VP G Sbjct: 133 VSCSGVARARARNAAPRTPAAPASPAAVPSEG 164
>ARI3A_HUMAN (Q99856) AT-rich interactive domain-containing protein 3A (ARID| domain-containing protein 3A) (B-cell regulator of IgH transcription) (Bright) (E2F-binding protein 1) Length = 593 Score = 31.2 bits (69), Expect = 1.0 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = -2 Query: 201 SRAALPPNPSVRPSPAFVPPRGDAAPPEERKEAGVRESLAALXXXXXXXXXPAGI 37 +R LPP+P PA P R AAP E+R+ R A + AG+ Sbjct: 23 ARQQLPPDP-----PAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGL 72
>TGT_PASMU (P57831) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 385 Score = 31.2 bits (69), Expect = 1.0 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +3 Query: 147 ARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCR 266 A+ RE +D + + C+HYT+ CGE+ G R Sbjct: 293 AKYREDTSPLDPECDCYTCKHYTKAYLYHLDKCGEILGAR 332
>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and| dental anomalies protein) Length = 1630 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Frame = -2 Query: 195 AALPPNPSVRPSPA--FVPPRGDAAPPEERKEAGVRESLAALXXXXXXXXXPA 43 + LPP P P+PA PP G+A+ E AG+ E+ A A Sbjct: 65 SGLPPPPPPLPAPADQTQPPHGEASVAGEESTAGIPEAAPAAGEASSAAAAAA 117
>HOT13_YEAST (P36078) Helper of Tim protein 13| Length = 116 Score = 30.4 bits (67), Expect = 1.8 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +3 Query: 228 IRAPCCGEVFGCRHCHNQ-AKNSLE-VDVLDRHDIPRHEISKVICSLCNXE 374 IR CC + + C CH + + + LE D+LD D +H +IC +C E Sbjct: 29 IRFKCCDKYYACFECHQELSSHPLEKYDLLD--DANKH---LIICGVCRHE 74
>SOX9_PONPY (P61754) Transcription factor SOX-9| Length = 509 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 186 PPNPSVRPSPAFVPPRGDAAPPEE 115 PP P P P PP+ AAPP++ Sbjct: 353 PPAPQAPPQPQAAPPQQPAAPPQQ 376
>SOX9_PANTR (Q9BG89) Transcription factor SOX-9| Length = 509 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 186 PPNPSVRPSPAFVPPRGDAAPPEE 115 PP P P P PP+ AAPP++ Sbjct: 353 PPAPQAPPQPQAAPPQQPAAPPQQ 376
>SOX9_MACMU (P61753) Transcription factor SOX-9| Length = 509 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 186 PPNPSVRPSPAFVPPRGDAAPPEE 115 PP P P P PP+ AAPP++ Sbjct: 353 PPAPQAPPQPQAAPPQQPAAPPQQ 376
>SOX9_HUMAN (P48436) Transcription factor SOX-9| Length = 509 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 186 PPNPSVRPSPAFVPPRGDAAPPEE 115 PP P P P PP+ AAPP++ Sbjct: 353 PPAPQAPPQPQAAPPQQPAAPPQQ 376
>SOX9_CALJA (Q9BG91) Transcription factor SOX-9| Length = 509 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 186 PPNPSVRPSPAFVPPRGDAAPPEE 115 PP P P P PP+ AAPP++ Sbjct: 353 PPAPQAPPQPQAAPPQQPAAPPQQ 376
>H6ST3_HUMAN (Q8IZP7) Heparan-sulfate 6-O-sulfotransferase 3 (EC 2.8.2.-)| (HS6ST-3) Length = 471 Score = 29.3 bits (64), Expect = 3.9 Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 25/68 (36%) Frame = -2 Query: 228 SCTSSCN------------------ARSRAALPPN-----PSVRPSPAFVP--PRGDAAP 124 SCTSSC RA PP P + P P P PRG AAP Sbjct: 29 SCTSSCTNLGEQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAP 88 Query: 123 PEERKEAG 100 EE +E G Sbjct: 89 EEEDEEPG 96
>CHEB2_CAUCR (Q9AAK0) Chemotaxis response regulator protein-glutamate| methylesterase of group 2 operon (EC 3.1.1.61) Length = 347 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = -2 Query: 201 SRAALPPNPSVRPSPAFVPPRGDAAPPEE 115 +RAA P P P P PP D A P E Sbjct: 129 ARAARPAPPQAAPRPTLAPPSSDPAGPIE 157
>TGT_MANSM (Q65S94) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 379 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = +3 Query: 147 ARKRETAGQMDLGAEQHGCEHYTRRCRIRAPCCGEVFGCR 266 A+ ++ +D + + C+HYT+ CGE+ G R Sbjct: 293 AKYKDDTSPLDPHCDCYTCQHYTKSYLYHLDKCGEILGAR 332
>FIP1_RAT (Q5U317) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| Length = 536 Score = 28.9 bits (63), Expect = 5.1 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 189 LPPNPSVRPSPAFVPPRGDAAPP 121 LPP P+V +P +PP G PP Sbjct: 315 LPPPPTVSTAPPLIPPPGFPPPP 337
>FIP1_HUMAN (Q6UN15) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| (Factor interacting with PAP) (hFip1) (Rearranged in hypereosinophilia) Length = 594 Score = 28.9 bits (63), Expect = 5.1 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 189 LPPNPSVRPSPAFVPPRGDAAPP 121 LPP P+V +P +PP G PP Sbjct: 375 LPPPPTVSTAPPLIPPPGFPPPP 397
>RNZ_BACTN (Q89ZN1) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 316 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +3 Query: 225 RIRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKV 350 R R PCCG +F Q N + D++D + +P +E++++ Sbjct: 142 RHRIPCCGFLFE----EKQRPNHIIRDMVDFYKVPVYELNRI 179
>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1615 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/47 (40%), Positives = 22/47 (46%) Frame = -2 Query: 231 VSCTSSCNARSRAALPPNPSVRPSPAFVPPRGDAAPPEERKEAGVRE 91 VS S AR+ AA PP P P P G A PPE R +R+ Sbjct: 442 VSPPESPRARAAAAQPPTEHGPPPPR--PAPGPAEPPEPRVPEPLRK 486
>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) Length = 487 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -2 Query: 186 PPNPSVRPSPAFVPPRGDAAPPEERKEAGVRE 91 PP P P P PP PP +R++A +E Sbjct: 78 PPPPPPPPPPPSPPPPPPPPPPPQRRDAWTQE 109
>TRAF2_HUMAN (Q12933) TNF receptor-associated factor 2 (Tumor necrosis factor| type 2 receptor-associated protein 3) Length = 501 Score = 28.1 bits (61), Expect = 8.8 Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 1/72 (1%) Frame = +3 Query: 192 QHGCEHYTRRCR-IRAPCCGEVFGCRHCHNQAKNSLEVDVLDRHDIPRHEISKVICSLCN 368 +H C + CR RAPCCG H K L D + IPR + Sbjct: 153 EHECPERSLSCRHCRAPCCGADVKAHH-EVCPKFPLTCDGCGKKKIPREKF--------- 202 Query: 369 XEQDVQKNCSGC 404 QD K C C Sbjct: 203 --QDHVKTCGKC 212
>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) Length = 1636 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -2 Query: 189 LPPNPSVRPSPAFVPPRGDAA--PPEERKEAGVRESLAA 79 L P+P+ P P VPPR AA PP R+ A + L++ Sbjct: 1084 LVPSPAPSPGPGPVPPRPPAAEPPPCLRRGAAAADLLSS 1122
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing| mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Frame = -2 Query: 201 SRAALPPNPSVR----PSPAFVPPRGDAAPPEERKEAGVRESLAA 79 SRA + P P+ P+P PP A PP KE E+ AA Sbjct: 790 SRAPIEPTPASEATGAPTPPPAPPSPSAPPPVVPKEEKEEETAAA 834
>COBB_STRCO (Q9RJ16) Cobyrinic acid A,C-diamide synthase| Length = 486 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Frame = -2 Query: 279 GCXXXXXXXXXXXXXPVSCTSSCNARSRAALPPNPSVRPSPAFVPPRGDAAPPEERKEA- 103 GC +SC + + + PP P PSP PP P R +A Sbjct: 224 GCDLEALVGLARSTGALSCAAWDAGEALVSSPPPPLPVPSPGAAPPDPLVRPGRPRPQAP 283 Query: 102 -GVRESLA 82 G+R +A Sbjct: 284 DGLRRRVA 291
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -2 Query: 204 RSRAALPPNPSVRPSP-AFVPPRGDAAPPEERK 109 RSR+ P+P RPSP PPR PP R+ Sbjct: 304 RSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRR 336
>MIG10_CAEEL (P34400) Abnormal cell migration protein 10| Length = 779 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Frame = -2 Query: 228 SCTSSCNARSR-AALPPNPSVR-----PSPAFVPPRGDAAPPEERKEAGVRESL 85 S T S N R R +A N S R PSP V PR EE K +R++L Sbjct: 259 SSTESSNNRCRNSAFSSNDSCRDSLNTPSPTQVSPRNGELNAEEAKAQKIRQAL 312 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,532,043 Number of Sequences: 219361 Number of extensions: 735034 Number of successful extensions: 4594 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3821 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4526 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
