ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast63e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative... 218 1e-53
2dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
3dbj|AK072693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
4dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
5gb|BT016752.1| Zea mays clone Contig585 mRNA sequence 147 3e-32
6gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
9dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
10dbj|AK104287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
11dbj|AK104170.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
12dbj|AK069502.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
13dbj|AK059316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
15gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
16emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa... 76 1e-10
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 70 6e-09
18gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 70 6e-09
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
20gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome... 70 6e-09
21gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
22dbj|AK059950.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
23ref|XM_470211.1| Oryza sativa (japonica cultivar-group), predic... 64 4e-07
24dbj|AK073680.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
25gb|AY365035.1| Zea mays pollen germination-related protein-like ... 58 2e-05
26ref|XM_476180.1| Oryza sativa (japonica cultivar-group), predic... 54 4e-04
27gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
28gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
29dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
30gb|AY105408.1| Zea mays PCO132099 mRNA sequence 44 0.36
31gb|AC134569.4| Mus musculus BAC clone RP24-240H21 from chromosom... 42 1.4
32ref|XM_541048.2| PREDICTED: Canis familiaris similar to Galanin ... 40 5.7
33emb|AL357149.13| Human DNA sequence from clone RP11-352E13 on ch... 40 5.7
34emb|AL139328.8| Human DNA sequence from clone RP11-84N7 on chrom... 40 5.7
35gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, co... 40 5.7

>ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative PGPD14 protein
           (pollen germination related protein) (OSJNBa0018F16.5),
           mRNA
          Length = 1263

 Score =  218 bits (110), Expect = 1e-53
 Identities = 204/236 (86%)
 Strand = Plus / Plus

                                                                       
Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248
           |||||||||||||||||||||||||||||| | ||||||||  ||||||| |||||||||
Sbjct: 153 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 212

                                                                       
Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308
           ||||| ||||||||| |||||||||||||| | || ||||||||||||||| |  |  ||
Sbjct: 213 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 272

                                                                       
Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368
              ||||| ||||| |||||||||||||||||||  ||||| ||||||||||||||| ||
Sbjct: 273 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 332

                                                                   
Query: 369 anagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggngaaata 424
           | |||||||||||| ||  || |||| || ||||||||||||||||||| ||||||
Sbjct: 333 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaata 388



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>dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G01, full
           insert sequence
          Length = 1284

 Score =  218 bits (110), Expect = 1e-53
 Identities = 204/236 (86%)
 Strand = Plus / Plus

                                                                       
Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248
           |||||||||||||||||||||||||||||| | ||||||||  ||||||| |||||||||
Sbjct: 163 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 222

                                                                       
Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308
           ||||| ||||||||| |||||||||||||| | || ||||||||||||||| |  |  ||
Sbjct: 223 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 282

                                                                       
Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368
              ||||| ||||| |||||||||||||||||||  ||||| ||||||||||||||| ||
Sbjct: 283 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 342

                                                                   
Query: 369 anagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggngaaata 424
           | |||||||||||| ||  || |||| || ||||||||||||||||||| ||||||
Sbjct: 343 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaata 398



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>dbj|AK072693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142C17, full
           insert sequence
          Length = 1095

 Score =  218 bits (110), Expect = 1e-53
 Identities = 204/236 (86%)
 Strand = Plus / Plus

                                                                       
Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248
           |||||||||||||||||||||||||||||| | ||||||||  ||||||| |||||||||
Sbjct: 164 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 223

                                                                       
Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308
           ||||| ||||||||| |||||||||||||| | || ||||||||||||||| |  |  ||
Sbjct: 224 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 283

                                                                       
Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368
              ||||| ||||| |||||||||||||||||||  ||||| ||||||||||||||| ||
Sbjct: 284 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 343

                                                                   
Query: 369 anagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggngaaata 424
           | |||||||||||| ||  || |||| || ||||||||||||||||||| ||||||
Sbjct: 344 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaata 399



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>dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E12, full
           insert sequence
          Length = 1283

 Score =  218 bits (110), Expect = 1e-53
 Identities = 204/236 (86%)
 Strand = Plus / Plus

                                                                       
Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248
           |||||||||||||||||||||||||||||| | ||||||||  ||||||| |||||||||
Sbjct: 167 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 226

                                                                       
Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308
           ||||| ||||||||| |||||||||||||| | || ||||||||||||||| |  |  ||
Sbjct: 227 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 286

                                                                       
Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368
              ||||| ||||| |||||||||||||||||||  ||||| ||||||||||||||| ||
Sbjct: 287 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 346

                                                                   
Query: 369 anagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggngaaata 424
           | |||||||||||| ||  || |||| || ||||||||||||||||||| ||||||
Sbjct: 347 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaata 402



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>gb|BT016752.1| Zea mays clone Contig585 mRNA sequence
          Length = 1421

 Score =  147 bits (74), Expect = 3e-32
 Identities = 157/185 (84%)
 Strand = Plus / Plus

                                                                       
Query: 233 ggcgccctgctgcggcgaggtcttcggctgccggcattgccacaaccaagctaagaattc 292
           |||||||||||||||| ||| |||||||||||| |||||||||||| | || ||||| ||
Sbjct: 382 ggcgccctgctgcggccaggccttcggctgccgccattgccacaacgacgccaagaactc 441

                                                                       
Query: 293 gctcgaggtggacgtcctcgaccggcacgacatcccccgccacgaaatcagcaaggtcat 352
           ||| ||||| |||   | |||||||||||| ||||||||||||||||| |  ||||| ||
Sbjct: 442 gctggaggtcgacccgcgcgaccggcacgagatcccccgccacgaaataaagaaggtgat 501

                                                                       
Query: 353 ctgctctctctgcaacanagaacaggatgtgcagaagaactgctccggttgtggggcatg 412
           ||| |||||||||  || ||||||||| |||||  ||||||||||| | |||||||| ||
Sbjct: 502 ctgttctctctgctccaaagaacaggacgtgcaacagaactgctccagctgtggggcctg 561

                
Query: 413 catgg 417
           |||||
Sbjct: 562 catgg 566



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>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
             complete sequence
          Length = 179157

 Score =  103 bits (52), Expect = 5e-19
 Identities = 73/80 (91%)
 Strand = Plus / Minus

                                                                         
Query: 199   gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 258
             |||||||||||||||||||| | ||||||||  ||||||| |||||||||||||| ||||
Sbjct: 72889 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 72830

                                 
Query: 259   gctgccggcattgccacaac 278
             ||||| ||||||||||||||
Sbjct: 72829 gctgcaggcattgccacaac 72810



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 346   aggtcatctgctctctctgcaacanagaacaggatgt 382
             |||| ||||||||||||||| ||| ||||||||||||
Sbjct: 71687 aggttatctgctctctctgcgacaaagaacaggatgt 71651



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 312   gaccggcacgacatcccccgccacgaaatca 342
             ||||| ||||| |||||||||||||||||||
Sbjct: 72636 gaccgtcacgagatcccccgccacgaaatca 72606



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 399   ggttgtggggcatgcatggngaaata 424
             ||||||||||||||||||| ||||||
Sbjct: 71512 ggttgtggggcatgcatggggaaata 71487



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  103 bits (52), Expect = 5e-19
 Identities = 73/80 (91%)
 Strand = Plus / Minus

                                                                            
Query: 199      gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 258
                |||||||||||||||||||| | ||||||||  ||||||| |||||||||||||| ||||
Sbjct: 16194000 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 16193941

                                    
Query: 259      gctgccggcattgccacaac 278
                ||||| ||||||||||||||
Sbjct: 16193940 gctgcaggcattgccacaac 16193921



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 346      aggtcatctgctctctctgcaacanagaacaggatgt 382
                |||| ||||||||||||||| ||| ||||||||||||
Sbjct: 16192798 aggttatctgctctctctgcgacaaagaacaggatgt 16192762



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 312      gaccggcacgacatcccccgccacgaaatca 342
                ||||| ||||| |||||||||||||||||||
Sbjct: 16193747 gaccgtcacgagatcccccgccacgaaatca 16193717



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 399      ggttgtggggcatgcatggngaaata 424
                ||||||||||||||||||| ||||||
Sbjct: 16192623 ggttgtggggcatgcatggggaaata 16192598



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  103 bits (52), Expect = 5e-19
 Identities = 73/80 (91%)
 Strand = Plus / Minus

                                                                            
Query: 199      gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 258
                |||||||||||||||||||| | ||||||||  ||||||| |||||||||||||| ||||
Sbjct: 16202241 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 16202182

                                    
Query: 259      gctgccggcattgccacaac 278
                ||||| ||||||||||||||
Sbjct: 16202181 gctgcaggcattgccacaac 16202162



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 346      aggtcatctgctctctctgcaacanagaacaggatgt 382
                |||| ||||||||||||||| ||| ||||||||||||
Sbjct: 16201039 aggttatctgctctctctgcgacaaagaacaggatgt 16201003



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 312      gaccggcacgacatcccccgccacgaaatca 342
                ||||| ||||| |||||||||||||||||||
Sbjct: 16201988 gaccgtcacgagatcccccgccacgaaatca 16201958



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 399      ggttgtggggcatgcatggngaaata 424
                ||||||||||||||||||| ||||||
Sbjct: 16200864 ggttgtggggcatgcatggggaaata 16200839



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>dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051O08, full
           insert sequence
          Length = 2604

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 126/154 (81%)
 Strand = Plus / Plus

                                                                       
Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248
           |||||| |||| |||| |||||||| |||||  |||| |||| |||||||||||||||||
Sbjct: 281 gagcagtacggatgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggc 340

                                                                       
Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308
           ||| ||||||  ||| |||| ||||||||| |||| ||| | ||| | |||||   | ||
Sbjct: 341 gagatcttcgattgcaggcactgccacaacgaagcgaaggactcgttggaggtcagcatc 400

                                             
Query: 309 ctcgaccggcacgacatcccccgccacgaaatca 342
             |||||||||||| ||||| ||||| |||||||
Sbjct: 401 agcgaccggcacgagatccctcgccatgaaatca 434



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                        
Query: 346  aggtcatctgctctctctgcaacanagaacaggatgtgcagaagaactgctccggttgtg 405
            |||| ||||||||||||||||||| |||||||||||| ||  || | ||||||  |||||
Sbjct: 1675 aggttatctgctctctctgcaacaaagaacaggatgtacaacaggattgctccaattgtg 1734

                    
Query: 406  gggcatgc 413
            ||||||||
Sbjct: 1735 gggcatgc 1742



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>dbj|AK104287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D07, full
           insert sequence
          Length = 1252

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                       
Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252
           ||||||| ||||||||||||| |||||| |||| |||   ||||||||||||||||||||
Sbjct: 190 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 249

                                     
Query: 253 tcttcggctgccggcattgccacaac 278
           | ||||  ||||| ||||||||||||
Sbjct: 250 tgttcgcttgccgccattgccacaac 275



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>dbj|AK104170.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F09, full
           insert sequence
          Length = 1203

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                       
Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252
           ||||||| ||||||||||||| |||||| |||| |||   ||||||||||||||||||||
Sbjct: 193 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 252

                                     
Query: 253 tcttcggctgccggcattgccacaac 278
           | ||||  ||||| ||||||||||||
Sbjct: 253 tgttcgcttgccgccattgccacaac 278



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>dbj|AK069502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020D18, full
           insert sequence
          Length = 1306

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                       
Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252
           ||||||| ||||||||||||| |||||| |||| |||   ||||||||||||||||||||
Sbjct: 212 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 271

                                     
Query: 253 tcttcggctgccggcattgccacaac 278
           | ||||  ||||| ||||||||||||
Sbjct: 272 tgttcgcttgccgccattgccacaac 297



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>dbj|AK059316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H03, full
           insert sequence
          Length = 1334

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                       
Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252
           ||||||| ||||||||||||| |||||| |||| |||   ||||||||||||||||||||
Sbjct: 190 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 249

                                     
Query: 253 tcttcggctgccggcattgccacaac 278
           | ||||  ||||| ||||||||||||
Sbjct: 250 tgttcgcttgccgccattgccacaac 275



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                            
Query: 201      tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260
                ||||||||||||| |||||| |||| |||   ||||||||||||||||||||| ||||  
Sbjct: 21490548 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 21490607

                                  
Query: 261      tgccggcattgccacaac 278
                ||||| ||||||||||||
Sbjct: 21490608 tgccgccattgccacaac 21490625



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                            
Query: 201      tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260
                ||||||||||||| |||||| |||| |||   ||||||||||||||||||||| ||||  
Sbjct: 21418869 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 21418928

                                  
Query: 261      tgccggcattgccacaac 278
                ||||| ||||||||||||
Sbjct: 21418929 tgccgccattgccacaac 21418946



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>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 158019

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                          
Query: 201    tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260
              ||||||||||||| |||||| |||| |||   ||||||||||||||||||||| ||||  
Sbjct: 155341 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 155282

                                
Query: 261    tgccggcattgccacaac 278
              ||||| ||||||||||||
Sbjct: 155281 tgccgccattgccacaac 155264



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                           
Query: 201     tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260
               |||| |||||||| |||||  |||| |||| |||||||||||||||||||| ||||||  
Sbjct: 2531063 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 2531122

                                      
Query: 261     tgccggcattgccacaaccaagc 283
               ||| |||| ||||||||| ||||
Sbjct: 2531123 tgcaggcactgccacaacgaagc 2531145



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                            
Query: 205      agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264
                |||| |||| ||||||||||||||| |||||||| ||||||  ||| ||||||  |||||
Sbjct: 13072459 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 13072400

                              
Query: 265      ggcattgccacaac 278
                | ||||||||||||
Sbjct: 13072399 gccattgccacaac 13072386



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                    
Query: 346     aggtcatctgctctctctgcaacanagaacaggatgt 382
               |||| ||||||||||||||||||| ||||||||||||
Sbjct: 2532540 aggttatctgctctctctgcaacaaagaacaggatgt 2532576



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 311     cgaccggcacgacatcccccgccacgaaatca 342
               |||||||||||| ||||| ||||| |||||||
Sbjct: 2531267 cgaccggcacgagatccctcgccatgaaatca 2531298



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>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                          
Query: 201    tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260
              |||| |||||||| |||||  |||| |||| |||||||||||||||||||| ||||||  
Sbjct: 139031 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 138972

                                     
Query: 261    tgccggcattgccacaaccaagc 283
              ||| |||| ||||||||| ||||
Sbjct: 138971 tgcaggcactgccacaacgaagc 138949



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                   
Query: 346    aggtcatctgctctctctgcaacanagaacaggatgt 382
              |||| ||||||||||||||||||| ||||||||||||
Sbjct: 137554 aggttatctgctctctctgcaacaaagaacaggatgt 137518



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 311    cgaccggcacgacatcccccgccacgaaatca 342
              |||||||||||| ||||| ||||| |||||||
Sbjct: 138827 cgaccggcacgagatccctcgccatgaaatca 138796



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                           
Query: 201     tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260
               |||| |||||||| |||||  |||| |||| |||||||||||||||||||| ||||||  
Sbjct: 2531173 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 2531232

                                      
Query: 261     tgccggcattgccacaaccaagc 283
               ||| |||| ||||||||| ||||
Sbjct: 2531233 tgcaggcactgccacaacgaagc 2531255



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                            
Query: 205      agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264
                |||| |||| ||||||||||||||| |||||||| ||||||  ||| ||||||  |||||
Sbjct: 13069234 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 13069175

                              
Query: 265      ggcattgccacaac 278
                | ||||||||||||
Sbjct: 13069174 gccattgccacaac 13069161



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                    
Query: 346     aggtcatctgctctctctgcaacanagaacaggatgt 382
               |||| ||||||||||||||||||| ||||||||||||
Sbjct: 2532650 aggttatctgctctctctgcaacaaagaacaggatgt 2532686



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 311     cgaccggcacgacatcccccgccacgaaatca 342
               |||||||||||| ||||| ||||| |||||||
Sbjct: 2531377 cgaccggcacgagatccctcgccatgaaatca 2531408



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>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09,
              complete sequence
          Length = 106057

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                          
Query: 201    tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260
              |||| |||||||| |||||  |||| |||| |||||||||||||||||||| ||||||  
Sbjct: 103559 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 103618

                                     
Query: 261    tgccggcattgccacaaccaagc 283
              ||| |||| ||||||||| ||||
Sbjct: 103619 tgcaggcactgccacaacgaagc 103641



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                   
Query: 346    aggtcatctgctctctctgcaacanagaacaggatgt 382
              |||| ||||||||||||||||||| ||||||||||||
Sbjct: 105036 aggttatctgctctctctgcaacaaagaacaggatgt 105072



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 311    cgaccggcacgacatcccccgccacgaaatca 342
              |||||||||||| ||||| ||||| |||||||
Sbjct: 103763 cgaccggcacgagatccctcgccatgaaatca 103794



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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11,
              complete sequence
          Length = 176637

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                          
Query: 205    agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264
              |||| |||| ||||||||||||||| |||||||| ||||||  ||| ||||||  |||||
Sbjct: 150157 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 150098

                            
Query: 265    ggcattgccacaac 278
              | ||||||||||||
Sbjct: 150097 gccattgccacaac 150084



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>dbj|AK059950.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B01, full
           insert sequence
          Length = 1059

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264
           |||| |||| ||||||||||||||| |||||||| ||||||  ||| ||||||  |||||
Sbjct: 101 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 160

                         
Query: 265 ggcattgccacaac 278
           | ||||||||||||
Sbjct: 161 gccattgccacaac 174



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>ref|XM_470211.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1050

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 351 atctgctctctctgcaacanagaacaggatgtgcagaagaactgctccggttgtggggca 410
           ||||||||||||||||||| |||||||||||| ||  || | ||||||  ||||||||||
Sbjct: 336 atctgctctctctgcaacaaagaacaggatgtacaacaggattgctccaattgtggggca 395

              
Query: 411 tgc 413
           |||
Sbjct: 396 tgc 398



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>dbj|AK073680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054M17, full
           insert sequence
          Length = 1232

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264
           |||| |||| ||||||||||| ||| |||||||| ||||||  ||| ||||||  |||||
Sbjct: 154 agcactacaggaggaggtgcacgatccgggcgccgtgctgcaacgacgtcttccactgcc 213

                         
Query: 265 ggcattgccacaac 278
           | ||||||||||||
Sbjct: 214 gccattgccacaac 227



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>gb|AY365035.1| Zea mays pollen germination-related protein-like mRNA sequence
          Length = 1106

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 351 atctgctctctctgcaacanagaacaggatgt 382
           ||||||||||||||||||| ||||||||||||
Sbjct: 13  atctgctctctctgcaacaaagaacaggatgt 44



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>ref|XM_476180.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 384

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 391 actgctccggttgtggggcatgcatggngaaata 424
           ||||||| ||||||||||||||||||| ||||||
Sbjct: 37  actgctctggttgtggggcatgcatggggaaata 70



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>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBb0012L23, complete sequence
          Length = 121659

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 391  actgctccggttgtggggcatgcatggngaaata 424
            ||||||| ||||||||||||||||||| ||||||
Sbjct: 5205 actgctctggttgtggggcatgcatggggaaata 5238



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>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08,
              complete sequence
          Length = 148348

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 391    actgctccggttgtggggcatgcatggngaaata 424
              ||||||| ||||||||||||||||||| ||||||
Sbjct: 100040 actgctctggttgtggggcatgcatggggaaata 100073



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                 
Query: 391     actgctccggttgtggggcatgcatggngaaata 424
               ||||||| ||||||||||||||||||| ||||||
Sbjct: 7145191 actgctctggttgtggggcatgcatggggaaata 7145224



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>gb|AY105408.1| Zea mays PCO132099 mRNA sequence
          Length = 795

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 372 gaacaggatgtgcagaagaactgctccggttgtggggcatgcatgg 417
           |||||||| |||||  ||||||||||| | |||||||| |||||||
Sbjct: 21  gaacaggacgtgcaacagaactgctccagctgtggggcctgcatgg 66



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>gb|AC134569.4| Mus musculus BAC clone RP24-240H21 from chromosome 16, complete sequence
          Length = 168794

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 98     acccccgcctccttcctctct 118
              |||||||||||||||||||||
Sbjct: 110450 acccccgcctccttcctctct 110430



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>ref|XM_541048.2| PREDICTED: Canis familiaris similar to Galanin receptor type 1
           (GAL1-R) (GALR1) (LOC483928), mRNA
          Length = 1056

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 97  gacccccgcctccttcctct 116
           ||||||||||||||||||||
Sbjct: 837 gacccccgcctccttcctct 856



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>emb|AL357149.13| Human DNA sequence from clone RP11-352E13 on chromosome 6 Contains the
             3' end of the UTRN gene for utrophin (homologous to
             dystrophin), complete sequence
          Length = 201399

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    cagcctccccattctttctt 33
             ||||||||||||||||||||
Sbjct: 23521 cagcctccccattctttctt 23502



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>emb|AL139328.8| Human DNA sequence from clone RP11-84N7 on chromosome 13 Contains part
             of the DGKH gene for diacylglycerol kinase eta, complete
             sequence
          Length = 148430

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     cagcacagcctccccattct 28
             ||||||||||||||||||||
Sbjct: 38551 cagcacagcctccccattct 38532



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>gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, complete sequence
          Length = 196331

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 98     acccccgcctccttcctctcttcc 121
              ||||||||||||||||| ||||||
Sbjct: 122125 acccccgcctccttcctttcttcc 122102


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,693,779
Number of Sequences: 3902068
Number of extensions: 2693779
Number of successful extensions: 67932
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67676
Number of HSP's gapped (non-prelim): 256
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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