ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast63e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1 34 0.074
2SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1... 32 0.37
3YWY3_CAEEL (Q11090) Putative serine/threonine-protein kinase C01... 28 5.3

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 34.3 bits (77), Expect = 0.074
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 69  HSAAETAAPRPRAQ*KGASPQRMYGAGWSRPTQREGR 179
           HS + +A+P PR + K  SP+   G  W  P  + GR
Sbjct: 523 HSPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSGR 559



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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 69  HSAAETAAPRPRAQ*KGASPQRMYGAGWSRPTQREGR 179
           HS + +A+P PR + K  SP+   G  W  P  +  R
Sbjct: 521 HSPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSSR 557



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>YWY3_CAEEL (Q11090) Putative serine/threonine-protein kinase C01C4.3 (EC|
           2.7.11.1)
          Length = 407

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 115 FYCARGRGAAVSAALCACQGWSWLEWQRQRLAARP 11
           FYC +G+     A++     W W +W +++  A P
Sbjct: 322 FYCMKGKFPWQKASIMCKPYWEWEQWLKRKNPALP 356


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,843,289
Number of Sequences: 219361
Number of extensions: 464675
Number of successful extensions: 1132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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