ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast63e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FOLR2_HUMAN (P14207) Folate receptor beta precursor (FR-beta) (F... 30 2.6
2POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocaps... 29 4.4
3POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocaps... 29 4.4
4POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocaps... 29 4.4
5POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocaps... 29 4.4
6XYLA_STRRO (P22857) Xylose isomerase (EC 5.3.1.5) 28 7.6

>FOLR2_HUMAN (P14207) Folate receptor beta precursor (FR-beta) (Folate receptor|
           2) (Folate receptor, fetal/placental) (Placental
           folate-binding protein) (FBP)
          Length = 255

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = -3

Query: 382 WSSQLRSRSTWSKSRLLLTMRCLERAV-WWRETEIQSWV*SRWKRSVDSTKRLSRSPS 212
           W  Q+    TW K R L    C E    WW +        S W R  D T  +++ P+
Sbjct: 110 WIQQVNQ--TWRKERFLDVPLCKEDCQRWWEDCHTSHTCKSNWHRGWDWTSGVNKCPA 165



to top

>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +2

Query: 332 QEPRFRPGR----PRAQLGRPDHPDGAAVLRG 415
           Q PR + GR    PR +LG P +P  AAV RG
Sbjct: 105 QPPRMQTGRGGSAPRPELGPPTNPFQAAVARG 136



to top

>POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +2

Query: 332 QEPRFRPGR----PRAQLGRPDHPDGAAVLRG 415
           Q PR + GR    PR +LG P +P  AAV RG
Sbjct: 105 QPPRMQTGRGGSAPRPELGPPTNPFQAAVARG 136



to top

>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +2

Query: 332 QEPRFRPGR----PRAQLGRPDHPDGAAVLRG 415
           Q PR + GR    PR +LG P +P  AAV RG
Sbjct: 105 QPPRMQTGRGGSAPRPELGPPTNPFQAAVARG 136



to top

>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 992

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +2

Query: 332 QEPRFRPGR----PRAQLGRPDHPDGAAVLRG 415
           Q PR + GR    PR +LG P +P  AAV RG
Sbjct: 104 QPPRMQTGRGGSAPRPELGPPTNPFQAAVARG 135



to top

>XYLA_STRRO (P22857) Xylose isomerase (EC 5.3.1.5)|
          Length = 393

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 78  RTMASKPGPLTRWPWHDMGNYKYALVAPWAAYSTYRFAAATARG 209
           R  AS P   T WP   + +   AL+A   A+  +   AA ARG
Sbjct: 324 RRRASAPRVWTSWPSRPLADGLEALLADRTAFEDFDVEAAAARG 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,472,760
Number of Sequences: 219361
Number of extensions: 635505
Number of successful extensions: 2402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2400
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top