ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63d05 |
|---|---|
| Clone Library Name | barley_pub |
>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor| Length = 254 Score = 105 bits (263), Expect = 5e-23 Identities = 52/78 (66%), Positives = 64/78 (82%) Frame = +3 Query: 243 HVDLADLLSVAGPFHTFLDYLQKTSVLETFQSKANDTKEEGITMFVPKDSAFAALRTTTF 422 +V+L +LLSVAGPFHTFLDYL T V+ETFQ++AN+T EEGIT+FVPKD AF A + Sbjct: 44 NVNLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNT-EEGITIFVPKDDAFKAQKNPPL 102 Query: 423 ANLTSDQLKSLMLYHALP 476 +NLT DQLK L+L+HALP Sbjct: 103 SNLTKDQLKQLVLFHALP 120
>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor| Length = 422 Score = 50.1 bits (118), Expect = 3e-06 Identities = 30/75 (40%), Positives = 43/75 (57%) Frame = +3 Query: 249 DLADLLSVAGPFHTFLDYLQKTSVLETFQSKANDTKEEGITMFVPKDSAFAALRTTTFAN 428 ++ LL AG TF + L + V++TF+S T E+G+T+F P D AF A N Sbjct: 190 NITGLLEKAG-CKTFANLLVSSGVIKTFES----TVEKGLTVFAPSDEAFKARGVPDLTN 244 Query: 429 LTSDQLKSLMLYHAL 473 LT ++ SL+ YHAL Sbjct: 245 LTQAEVVSLLEYHAL 259
>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor| (AtAGP8) Length = 420 Score = 45.4 bits (106), Expect = 8e-05 Identities = 28/75 (37%), Positives = 41/75 (54%) Frame = +3 Query: 249 DLADLLSVAGPFHTFLDYLQKTSVLETFQSKANDTKEEGITMFVPKDSAFAALRTTTFAN 428 ++ LL AG TF + L + VL+T++S E+G+T+F P D AF A Sbjct: 189 NITGLLEKAG-CKTFANLLVSSGVLKTYESAV----EKGLTVFAPSDEAFKAEGVPDLTK 243 Query: 429 LTSDQLKSLMLYHAL 473 LT ++ SL+ YHAL Sbjct: 244 LTQAEVVSLLEYHAL 258
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 34.7 bits (78), Expect = 0.14 Identities = 17/33 (51%), Positives = 19/33 (57%) Frame = -2 Query: 279 GRPRSGDPRGPHGAAPEPALGTAGGRPPAEQGG 181 G PR P+ P AP P GTAGGRP + GG Sbjct: 208 GPPR---PQAPRPQAPRPGPGTAGGRPGSSAGG 237
>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I| Length = 536 Score = 32.0 bits (71), Expect = 0.94 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Frame = -2 Query: 285 GTGRPRSGDPRGPHGAAPEPALGTAGGRPPAEQ-----GGSSSSA 166 G+ P +G+ AP P+ G G PPA GGSS+SA Sbjct: 315 GSPTPAAGNNTNGRPVAPRPSAGAGGANPPAASQPGLLGGSSNSA 359
>BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-associated| transcript 3) (Protein G3) Length = 1132 Score = 32.0 bits (71), Expect = 0.94 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +2 Query: 2 PPFPPHPVRAAFTAPPPCTRSGILGKAGDLQDEAQSRRFY 121 PP PP P T PPP + SG G G L E+ S F+ Sbjct: 662 PPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFF 701
>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2| Length = 964 Score = 31.2 bits (69), Expect = 1.6 Identities = 46/170 (27%), Positives = 55/170 (32%), Gaps = 4/170 (2%) Frame = +2 Query: 2 PPFPPHPVRAAFTAPPPCTRSGILGKAGDLQDEAQSRRFYRGHARHCRALLPSIRAEDEE 181 P P P AA AP P T + IL EA+ +R AR + I E+ Sbjct: 148 PEPKPEPKPAA--APAPRTVASILSPEEIAAREAEEKRQAAFRARQEALMREKIEREERR 205 Query: 182 PPCXXXXXXXXXXXXXXXXXXXXXXXXXERGRPVPHLPGLPPEDQR---PGDVPEQGERH 352 RG P G D R P ++G R Sbjct: 206 QAAKLAASQPAPEPAPVVEPQREERRDDRRGAPSGDNRGPRGNDNRGPRPAGAGDRGPR- 264 Query: 353 QGGGDHHVRAQGLCLRGAE-NDDVRQPH*RPAQVADAVPRAAQYYSLPSQ 499 GG + R G RG D R P RPA D PR A + PSQ Sbjct: 265 PGGDNRGPRPAGAGDRGPRPGGDNRGP--RPAGAGDRGPRPAPAAAAPSQ 312
>CTG1B_HUMAN (P78358) Cancer/testis antigen 1B (L antigen family member 2)| (LAGE-2 protein) (Autoimmunogenic cancer/testis antigen NY-ESO-1) Length = 180 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = -2 Query: 285 GTGRPRSGDPRGPHGAAPEPALGTAGGRPPAEQGGSSS 172 G G + RGP GA A G GG P GG++S Sbjct: 33 GPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAAS 70
>CTAG2_HUMAN (O75638) Cancer/testis antigen 2 (L antigen family member 1)| (LAGE-1 protein) (ESO-2 protein) Length = 210 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -2 Query: 285 GTGRPRSGDPRGPHGAAPEPALGTAGGRPPAEQGGSSSS 169 G G + RGP GA A G GG P GG++S+ Sbjct: 33 GPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGGAASA 71
>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2| Length = 1125 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -2 Query: 282 TGRPRSGDPRGPHGAAPEPALGTAGGRPPAEQGGSSSSA 166 TGRP + PR P G + G+ G PP E+ ++ +A Sbjct: 367 TGRPGTPPPRRPDGTSVGTRGGSEGATPPVERTATAPTA 405
>Y1483_SYNY3 (P74615) Hypothetical protein sll1483 precursor| Length = 180 Score = 30.0 bits (66), Expect = 3.6 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Frame = +3 Query: 357 EEGITMFVPKDSAFAALRTTTFANL----TSDQLKSLMLYHALP 476 E T+F P + AFAAL T +L D+L ++ YH +P Sbjct: 77 EGPFTVFAPTNDAFAALPAGTVESLLLPENKDKLVKILTYHVVP 120
>PCSK7_RAT (Q62849) Proprotein convertase subtilisin/kexin type 7 precursor| (EC 3.4.21.-) (Proprotein convertase PC7) (Subtilisin/kexin-like protease PC7) (Prohormone convertase PC7) (rPC7) Length = 783 Score = 30.0 bits (66), Expect = 3.6 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%) Frame = -1 Query: 445 SWSLVRLA----NVVVLSAAKAESLGTNMVIPSSLVSFALLWNVSRT 317 +W LV A +V L++ + L N +P S S +LWNVSRT Sbjct: 468 AWRLVNAAKIWTSVPYLASYVSPMLKENKAVPRSPHSLEVLWNVSRT 514
>PCSK7_MOUSE (Q61139) Proprotein convertase subtilisin/kexin type 7 precursor| (EC 3.4.21.-) (Proprotein convertase PC7) (Subtilisin/kexin-like protease PC7) (Prohormone convertase PC7) (Subtilisin-like proprotein convertase 7) (SPC7) Length = 770 Score = 30.0 bits (66), Expect = 3.6 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%) Frame = -1 Query: 445 SWSLVRLA----NVVVLSAAKAESLGTNMVIPSSLVSFALLWNVSRT 317 +W LV A +V L++ + L N +P S S +LWNVSRT Sbjct: 468 AWRLVNAAKIWTSVPYLASYVSPMLKENKAVPRSPHSLEVLWNVSRT 514
>YH35_SYNP2 (O33752) Hypothetical protein sll1735 homolog| Length = 133 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +3 Query: 282 FHTFLDYLQKTSVLETFQSKANDTKEEGITMFVPKDSAFAALRTTTFANLTSD--QLKSL 455 F T + +Q ++ET + + T+F P D AFA L T L + QL + Sbjct: 14 FSTLVAAVQAAGLVETLAGEGD------FTVFAPNDDAFAKLPPGTIQTLVQNPPQLARI 67 Query: 456 MLYH 467 + YH Sbjct: 68 LTYH 71
>CU093_HUMAN (P59091) Protein C21orf93| Length = 139 Score = 30.0 bits (66), Expect = 3.6 Identities = 18/42 (42%), Positives = 20/42 (47%) Frame = +2 Query: 269 RGRPVPHLPGLPPEDQRPGDVPEQGERHQGGGDHHVRAQGLC 394 RG +PH GLP RP V Q E Q HV + GLC Sbjct: 82 RGPGLPHTHGLPA---RPSHVRHQTEPVQVASRWHVPSDGLC 120
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 29.6 bits (65), Expect = 4.7 Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = -2 Query: 273 PRSGDPR-GPHGAAPEPALGTAGGRPPAEQGG 181 P G PR GP AP P T G RP A QGG Sbjct: 207 PAQGGPRPGPGQGAPRPG-ATPGPRPAAAQGG 237
>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 841 Score = 29.6 bits (65), Expect = 4.7 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = -2 Query: 276 RPRSGDPRGPHGAAPEPALGTAGGRPPAEQGGSSSSAR 163 RP+ P P P P A G+P A GGSS+ R Sbjct: 50 RPKPAPPERPR---PPPPRARAAGQPAARSGGSSNRVR 84
>GPR62_HUMAN (Q9BZJ7) Probable G-protein coupled receptor 62 (hGPCR8)| Length = 368 Score = 29.6 bits (65), Expect = 4.7 Identities = 18/36 (50%), Positives = 18/36 (50%) Frame = -2 Query: 276 RPRSGDPRGPHGAAPEPALGTAGGRPPAEQGGSSSS 169 RP G GP APE AGGR PA QG SS Sbjct: 332 RPPEGPAVGP-SEAPEQTPELAGGRSPAYQGPPESS 366
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3.6.1.-)| (ATP-dependent helicase xnp-1) (X-linked nuclear protein 1) Length = 1359 Score = 29.3 bits (64), Expect = 6.1 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -1 Query: 415 VVLSAAKAESLGTNMVIPSSLVSFALLWNVS 323 ++L + +A SLGTNMV + ++ F WN S Sbjct: 1045 LMLISTRAGSLGTNMVAANRVIIFDACWNPS 1075
>BARH1_DROME (Q24255) Homeobox protein B-H1 (Homeobox protein BarH1)| Length = 544 Score = 29.3 bits (64), Expect = 6.1 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -2 Query: 267 SGDPRGPHGAAPEPALGTAGGRPPA 193 + +P GPH AP P++G GG PP+ Sbjct: 471 AANPGGPHPVAPPPSVG--GGSPPS 493
>BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associated| transcript 3) Length = 1096 Score = 29.3 bits (64), Expect = 6.1 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = +2 Query: 2 PPFPPHPVRAAFTAPPPCTRSGILGKAGDLQDEAQSRRFY 121 PP PP P T PPP + SG G L E+ F+ Sbjct: 675 PPPPPPPAPEQQTTPPPGSPSGGTASPGGLGPESLPPEFF 714
>RS10A_ARATH (Q9SW09) 40S ribosomal protein S10-1| Length = 177 Score = 29.3 bits (64), Expect = 6.1 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -2 Query: 279 GRPRSGDPRGPHGAAPEPALGTAGGRPPAEQGGSSSSA 166 G PR GD +G A +P+ GGRP +G SA Sbjct: 131 GGPRGGDEKGGAPADFQPSFQGGGGRPGFGRGAGGYSA 168
>PYGO2_HUMAN (Q9BRQ0) Pygopus homolog 2| Length = 406 Score = 28.9 bits (63), Expect = 7.9 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 Query: 2 PPFPPHPVRAAFTAPP 49 PPFPP+P+ AF PP Sbjct: 134 PPFPPNPMGPAFNMPP 149
>GTPB1_HUMAN (O00178) GTP-binding protein 1 (G-protein 1) (GP-1) (GP1)| Length = 584 Score = 28.9 bits (63), Expect = 7.9 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 317 RPGDVPEQGERHQGGGDHHVRAQGLCLRGA 406 +P P G R +GG H V++QG C+ A Sbjct: 552 QPQPKPSSGGRRRGGQRHKVKSQGACVTPA 581
>COL2_CAEEL (P17656) Cuticle collagen 2 precursor| Length = 301 Score = 28.9 bits (63), Expect = 7.9 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = -2 Query: 285 GTGRPRSGDPRGPHGAAPEP-ALGTAGGRPPAEQGG 181 GTG P P+GP GAA P A G GG A + G Sbjct: 239 GTGGPGPAGPKGPPGAAGAPGADGNPGGPGTAGKPG 274
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/40 (35%), Positives = 16/40 (40%) Frame = -2 Query: 282 TGRPRSGDPRGPHGAAPEPALGTAGGRPPAEQGGSSSSAR 163 T RS P H +P P PP +G SSS R Sbjct: 684 TREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASSSPQR 723
>KCNA5_MOUSE (Q61762) Potassium voltage-gated channel subfamily A member 5| (Voltage-gated potassium channel subunit Kv1.5) (KV1-5) Length = 602 Score = 28.9 bits (63), Expect = 7.9 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 272 GRPVPHLPGLPPEDQRPGDVPEQGERHQGGG 364 GRP+P +P P+ +RP E+GE G G Sbjct: 64 GRPLPPMPQELPQPRRPSAEDEEGEGDPGLG 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,020,032 Number of Sequences: 219361 Number of extensions: 1079044 Number of successful extensions: 6619 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5270 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6569 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
