ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast63d04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X74545.1|TAATP2 T.aestivum atp-2 mRNA for ATP synthase beta subunit Length = 1891 Score = 319 bits (161), Expect = 4e-84 Identities = 176/181 (97%) Strand = Plus / Plus Query: 250 ggccccggccgacaagctgccccccacctccgacaagtacgtcggcgtcaagatcaccga 309 |||||| ||||| |||||||||||||||||||||||||||||||| | |||||||||||| Sbjct: 179 ggcccccgccgagaagctgccccccacctccgacaagtacgtcggtgccaagatcaccga 238 Query: 310 cgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggcgccgtcgtcga 369 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 239 cgagttcaccggcgccggctccatcggccaggtctgccaggtcatcggcgccgtcgtcga 298 Query: 370 cgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctcgaggtgctcgacaacag 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 cgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctcgaggtgctcgacaacag 358 Query: 430 c 430 | Sbjct: 359 c 359 Score = 89.7 bits (45), Expect = 7e-15 Identities = 51/53 (96%) Strand = Plus / Plus Query: 71 cgatccgcggccatggcgacgcgccgggccctctcctcgctccttcgatcggc 123 |||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 3 cgatccgcggccatggcgacgcgccgggccctctcctcgctcctccggtcggc 55
>gb|BT018722.1| Zea mays clone EL01N0518D08.d mRNA sequence Length = 1977 Score = 206 bits (104), Expect = 4e-50 Identities = 128/136 (94%) Strand = Plus / Plus Query: 292 cggcgtcaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggt 351 ||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||| Sbjct: 236 cggcggcaagatcaccgacgagttcaccggcgccggcgccatcggccaggtgtgccaggt 295 Query: 352 catcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgct 411 ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| Sbjct: 296 gatcggcgccgtcgtcgacgtgcgctacgatgagggcctcccgcccatcctcacggcgct 355 Query: 412 cgaggtgctcgacaac 427 |||||||||||||||| Sbjct: 356 cgaggtgctcgacaac 371
>gb|AY103634.1| Zea mays PCO073309 mRNA sequence Length = 1799 Score = 206 bits (104), Expect = 4e-50 Identities = 128/136 (94%) Strand = Plus / Plus Query: 292 cggcgtcaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggt 351 ||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||| Sbjct: 32 cggcggcaagatcaccgacgagttcaccggcgccggcgccatcggccaggtgtgccaggt 91 Query: 352 catcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgct 411 ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| Sbjct: 92 gatcggcgccgtcgtcgacgtgcgctacgatgagggcctcccgcccatcctcacggcgct 151 Query: 412 cgaggtgctcgacaac 427 |||||||||||||||| Sbjct: 152 cgaggtgctcgacaac 167
>gb|BT016806.1| Zea mays clone Contig639 mRNA sequence Length = 2139 Score = 198 bits (100), Expect = 1e-47 Identities = 127/136 (93%) Strand = Plus / Plus Query: 293 ggcgtcaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 352 |||| ||||||||||||||||||||||||||| ||| || |||||||||| |||||||| Sbjct: 257 ggcggcaagatcaccgacgagttcaccggcgctggcgccatcggccaggtgtgccaggtg 316 Query: 353 atcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctc 412 |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 317 atcggcgccgtcgttgacgtgcgcttcgatgagggcctcccgcccatcctcacggcgctc 376 Query: 413 gaggtgctcgacaaca 428 |||||||||||||||| Sbjct: 377 gaggtgctcgacaaca 392 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 78 cggccatggcgacgcgccgggccctctcctcgctcct 114 ||||||||||| | ||||||| | ||||||||||||| Sbjct: 48 cggccatggcgtcccgccgggtcgtctcctcgctcct 84
>emb|X54233.1|ZMATP2MT Maize ATP2 mRNA for mitochondrial ATP synthase beta subunit Length = 2029 Score = 198 bits (100), Expect = 1e-47 Identities = 127/136 (93%) Strand = Plus / Plus Query: 293 ggcgtcaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 352 |||| ||||||||||||||||||||||||||| ||| || |||||||||| |||||||| Sbjct: 258 ggcggcaagatcaccgacgagttcaccggcgctggcgccatcggccaggtgtgccaggtg 317 Query: 353 atcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctc 412 |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 318 atcggcgccgtcgttgacgtgcgcttcgatgagggcctcccgcccatcctcacggcgctc 377 Query: 413 gaggtgctcgacaaca 428 |||||||||||||||| Sbjct: 378 gaggtgctcgacaaca 393 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 78 cggccatggcgacgcgccgggccctctcctcgctcct 114 ||||||||||| | ||||||| | ||||||||||||| Sbjct: 49 cggccatggcgtcccgccgggtcgtctcctcgctcct 85
>gb|M36087.1|MZEMT2BATP Zea mays mitochondrial F-1-ATPase subunit 2 mRNA, complete cds; nuclear gene for mitochondrial product Length = 2054 Score = 196 bits (99), Expect = 4e-47 Identities = 123/131 (93%) Strand = Plus / Plus Query: 298 caagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcgg 357 ||||||||||||||||||||||||||| ||| || |||||||||| |||||||| ||||| Sbjct: 215 caagatcaccgacgagttcaccggcgctggcgccatcggccaggtgtgccaggtgatcgg 274 Query: 358 cgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctcgaggt 417 ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 275 cgccgtcgttgacgtgcgcttcgatgagggcctcccgcccatcctcacggcgctcgaggt 334 Query: 418 gctcgacaaca 428 ||||||||||| Sbjct: 335 gctcgacaaca 345 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 78 cggccatggcgacgcgccgggccctctcctcgctcct 114 ||||||||||| | ||||||| | ||||||||||||| Sbjct: 1 cggccatggcgtcccgccgggtcgtctcctcgctcct 37
>ref|XM_475868.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1659 Score = 178 bits (90), Expect = 1e-41 Identities = 117/126 (92%) Strand = Plus / Plus Query: 299 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 358 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 208 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 267 Query: 359 gccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctcgaggtg 418 ||||||||||||||||| || |||||||| || || ||||||||||| |||||||||||| Sbjct: 268 gccgtcgtcgacgtgcggtttgacgaggggctgcctcccatcctcacggcgctcgaggtg 327 Query: 419 ctcgac 424 |||||| Sbjct: 328 ctcgac 333 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 83 atggcgacgcgccgggccctctcctc 108 |||||||| ||||||||||||||||| Sbjct: 1 atggcgactcgccgggccctctcctc 26
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 178 bits (90), Expect = 1e-41 Identities = 117/126 (92%) Strand = Plus / Minus Query: 299 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 358 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 167664 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 167605 Query: 359 gccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctcgaggtg 418 ||||||||||||||||| || |||||||| || || ||||||||||| |||||||||||| Sbjct: 167604 gccgtcgtcgacgtgcggtttgacgaggggctgcctcccatcctcacggcgctcgaggtg 167545 Query: 419 ctcgac 424 |||||| Sbjct: 167544 ctcgac 167539 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 78 cggccatggcgacgcgccgggccctctcctc 108 ||||||||||||| ||||||||||||||||| Sbjct: 167876 cggccatggcgactcgccgggccctctcctc 167846
>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10, complete sequence Length = 116469 Score = 178 bits (90), Expect = 1e-41 Identities = 117/126 (92%) Strand = Plus / Minus Query: 299 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 358 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 5153 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 5094 Query: 359 gccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctcgaggtg 418 ||||||||||||||||| || |||||||| || || ||||||||||| |||||||||||| Sbjct: 5093 gccgtcgtcgacgtgcggtttgacgaggggctgcctcccatcctcacggcgctcgaggtg 5034 Query: 419 ctcgac 424 |||||| Sbjct: 5033 ctcgac 5028 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 78 cggccatggcgacgcgccgggccctctcctc 108 ||||||||||||| ||||||||||||||||| Sbjct: 5365 cggccatggcgactcgccgggccctctcctc 5335
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 178 bits (90), Expect = 1e-41 Identities = 117/126 (92%) Strand = Plus / Minus Query: 299 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 358 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 27292696 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 27292637 Query: 359 gccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctcgaggtg 418 ||||||||||||||||| || |||||||| || || ||||||||||| |||||||||||| Sbjct: 27292636 gccgtcgtcgacgtgcggtttgacgaggggctgcctcccatcctcacggcgctcgaggtg 27292577 Query: 419 ctcgac 424 |||||| Sbjct: 27292576 ctcgac 27292571 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 78 cggccatggcgacgcgccgggccctctcctc 108 ||||||||||||| ||||||||||||||||| Sbjct: 27292908 cggccatggcgactcgccgggccctctcctc 27292878
>dbj|AK071143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081F24, full insert sequence Length = 1071 Score = 178 bits (90), Expect = 1e-41 Identities = 117/126 (92%) Strand = Plus / Plus Query: 299 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 358 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 317 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 376 Query: 359 gccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctcgaggtg 418 ||||||||||||||||| || |||||||| || || ||||||||||| |||||||||||| Sbjct: 377 gccgtcgtcgacgtgcggtttgacgaggggctgcctcccatcctcacggcgctcgaggtg 436 Query: 419 ctcgac 424 |||||| Sbjct: 437 ctcgac 442 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 78 cggccatggcgacgcgccgggccctctcctc 108 ||||||||||||| ||||||||||||||||| Sbjct: 105 cggccatggcgactcgccgggccctctcctc 135
>dbj|AK061681.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A03, full insert sequence Length = 1973 Score = 178 bits (90), Expect = 1e-41 Identities = 117/126 (92%) Strand = Plus / Plus Query: 299 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 358 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 258 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 317 Query: 359 gccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctcgaggtg 418 ||||||||||||||||| || |||||||| || || ||||||||||| |||||||||||| Sbjct: 318 gccgtcgtcgacgtgcggtttgacgaggggctgcctcccatcctcacggcgctcgaggtg 377 Query: 419 ctcgac 424 |||||| Sbjct: 378 ctcgac 383 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 78 cggccatggcgacgcgccgggccctctcctc 108 ||||||||||||| ||||||||||||||||| Sbjct: 46 cggccatggcgactcgccgggccctctcctc 76
>dbj|D10491.1|RICATPB Oryza sativa (japonica cultivar-group) mRNA for mitochondrial F1-ATPase Length = 1929 Score = 163 bits (82), Expect = 6e-37 Identities = 115/126 (91%) Strand = Plus / Plus Query: 299 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 358 |||||||||||||||||||||||||||||| || | || ||||| ||||||||||||||| Sbjct: 219 aagatcaccgacgagttcaccggcgccggcgccattgggcaggtgtgccaggtcatcggc 278 Query: 359 gccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctcgaggtg 418 ||||||||||||||||| || |||||||| || || ||||||||||| |||||||||||| Sbjct: 279 gccgtcgtcgacgtgcggtttgacgaggggctgcctcccatcctcacggcgctcgaggtg 338 Query: 419 ctcgac 424 |||||| Sbjct: 339 ctcgac 344 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 78 cggccatggcgacgcgccgggccctctcctc 108 ||||||||||||||||||||||||||||||| Sbjct: 10 cggccatggcgacgcgccgggccctctcctc 40
>ref|NM_192090.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1668 Score = 135 bits (68), Expect = 1e-28 Identities = 116/132 (87%) Strand = Plus / Plus Query: 293 ggcgtcaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 352 |||| |||||||||||| |||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 217 ggcggcaagatcaccgatgagttcacgggcgctggcgccgtcgggcaggtgtgccaggtg 276 Query: 353 atcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctc 412 || ||||||||||| |||||||| |||||||||||||| || || ||||| |||||||| Sbjct: 277 attggcgccgtcgtggacgtgcggttcgacgagggcctgcccccgatcctgaccgcgctg 336 Query: 413 gaggtgctcgac 424 |||||||||||| Sbjct: 337 gaggtgctcgac 348
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 135 bits (68), Expect = 1e-28 Identities = 116/132 (87%) Strand = Plus / Plus Query: 293 ggcgtcaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 352 |||| |||||||||||| |||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 28271283 ggcggcaagatcaccgatgagttcacgggcgctggcgccgtcgggcaggtgtgccaggtg 28271342 Query: 353 atcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctc 412 || ||||||||||| |||||||| |||||||||||||| || || ||||| |||||||| Sbjct: 28271343 attggcgccgtcgtggacgtgcggttcgacgagggcctgcccccgatcctgaccgcgctg 28271402 Query: 413 gaggtgctcgac 424 |||||||||||| Sbjct: 28271403 gaggtgctcgac 28271414 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 77 gcggccatggcgacgcgccgggccctctcctc 108 |||||||||||||| |||||||||||| |||| Sbjct: 28271061 gcggccatggcgacccgccgggccctcacctc 28271092 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 cggcgccgtcgtcgacgtgcg 375 ||||||||||||||||||||| Sbjct: 22102167 cggcgccgtcgtcgacgtgcg 22102147 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 gcgcttcgacgagggcctcccgcc 396 ||||||||||||| |||||||||| Sbjct: 41994622 gcgcttcgacgagcgcctcccgcc 41994599
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 135 bits (68), Expect = 1e-28 Identities = 116/132 (87%) Strand = Plus / Plus Query: 293 ggcgtcaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 352 |||| |||||||||||| |||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 105790 ggcggcaagatcaccgatgagttcacgggcgctggcgccgtcgggcaggtgtgccaggtg 105849 Query: 353 atcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctc 412 || ||||||||||| |||||||| |||||||||||||| || || ||||| |||||||| Sbjct: 105850 attggcgccgtcgtggacgtgcggttcgacgagggcctgcccccgatcctgaccgcgctg 105909 Query: 413 gaggtgctcgac 424 |||||||||||| Sbjct: 105910 gaggtgctcgac 105921 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 77 gcggccatggcgacgcgccgggccctctcctc 108 |||||||||||||| |||||||||||| |||| Sbjct: 105568 gcggccatggcgacccgccgggccctcacctc 105599
>dbj|AK071414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093I16, full insert sequence Length = 1688 Score = 135 bits (68), Expect = 1e-28 Identities = 116/132 (87%) Strand = Plus / Plus Query: 293 ggcgtcaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 352 |||| |||||||||||| |||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 33 ggcggcaagatcaccgatgagttcacgggcgctggcgccgtcgggcaggtgtgccaggtg 92 Query: 353 atcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctc 412 || ||||||||||| |||||||| |||||||||||||| || || ||||| |||||||| Sbjct: 93 attggcgccgtcgtggacgtgcggttcgacgagggcctgcccccgatcctgaccgcgctg 152 Query: 413 gaggtgctcgac 424 |||||||||||| Sbjct: 153 gaggtgctcgac 164
>dbj|AK064953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A02, full insert sequence Length = 2050 Score = 127 bits (64), Expect = 3e-26 Identities = 116/132 (87%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 293 ggcgtcaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 352 |||| |||||||||||| |||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 329 ggcggcaagatcaccgatgagttcacgggcgctggcgccgtcgggcaggtgtgccaggtg 388 Query: 353 atcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcaccgcgctc 412 || ||||||||||| |||||||| |||||||||||||| || || ||||| |||||||| Sbjct: 389 attggcgccgtcgtggacgtgcggttcgacgagggcctgcc-ccgatcctgaccgcgctg 447 Query: 413 gaggtgctcgac 424 |||||||||||| Sbjct: 448 gaggtgctcgac 459 Score = 46.1 bits (23), Expect = 0.094 Identities = 26/27 (96%) Strand = Plus / Plus Query: 77 gcggccatggcgacgcgccgggccctc 103 |||||||||||||| |||||||||||| Sbjct: 106 gcggccatggcgacccgccgggccctc 132
>emb|Y15179.1|SBY15179 Sorghum bicolor F1-ATP synthase, cultivar CS3541, partial Length = 1361 Score = 119 bits (60), Expect = 8e-24 Identities = 87/96 (90%) Strand = Plus / Plus Query: 333 tcggccaggtctgccaggtcatcggcgccgtcgtcgacgtgcgcttcgacgagggcctcc 392 |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| || | Sbjct: 2 tcggccaggtgtgccaggtcatcggcgctgtcgtggacgtgcgcttcgacgaggggctgc 61 Query: 393 cgcccatcctcaccgcgctcgaggtgctcgacaaca 428 | || ||||| || |||||||||||||||||||||| Sbjct: 62 ccccgatcctgacggcgctcgaggtgctcgacaaca 97
>emb|Y15178.1|SBY15178 Sorghum bicolor F1-ATP synthase, cultivar 2077A, partial Length = 1361 Score = 103 bits (52), Expect = 5e-19 Identities = 85/96 (88%) Strand = Plus / Plus Query: 333 tcggccaggtctgccaggtcatcggcgccgtcgtcgacgtgcgcttcgacgagggcctcc 392 ||||||| || ||||||||| ||||||| ||||| |||||||||||||||||||| || | Sbjct: 2 tcggccatgtgtgccaggtcgtcggcgctgtcgtggacgtgcgcttcgacgaggggctgc 61 Query: 393 cgcccatcctcaccgcgctcgaggtgctcgacaaca 428 | || ||||| || |||||||||||||||||||||| Sbjct: 62 ccccgatcctgacggcgctcgaggtgctcgacaaca 97
>emb|X99599.1|RCATP1OPN R.capsulatus complete atp1 operon Length = 8009 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 346 ccaggtcatcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccg 394 ||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 5548 ccaggtcatcggcgccgtcgtcgacgtgcagttcgaagacggcctcccg 5596
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 347 caggtcatcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcacc 406 ||||||||||||||||| || ||||||| ||||||| ||||| ||||||||||| | | Sbjct: 922171 caggtcatcggcgccgtggtggacgtgcagttcgacggtggcctgccgcccatcctgaac 922230 Query: 407 gcgctcga 414 |||||||| Sbjct: 922231 gcgctcga 922238
>gb|AF073726.1|AF073726 Rhodobacter sphaeroides atp operon, partial sequence Length = 572 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 347 caggtcatcggcgccgtcgtcgacgtgcgcttcgacgagggcctcccgcccatcctcacc 406 ||||||||||||||||| || ||||||| ||||||| ||||| ||||||||||| | | Sbjct: 157 caggtcatcggcgccgtggtggacgtgcagttcgacggtggcctgccgcccatcctgaac 216 Query: 407 gcgctcga 414 |||||||| Sbjct: 217 gcgctcga 224
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 345 gccaggtcatcggcgccgtcgtcgacgtgcgcttcgacg 383 ||||||||||||||||||||||||||||| |||||||| Sbjct: 2569900 gccaggtcatcggcgccgtcgtcgacgtgaccttcgacg 2569938
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 332 gtcggccaggtctgccaggtcatcggcgccgtcgtcgacgtgc 374 |||||| ||||| |||||||||||||||| ||||||||||||| Sbjct: 3246858 gtcggcaaggtccgccaggtcatcggcgcagtcgtcgacgtgc 3246816
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 346 ccaggtcatcggcgccgtcgtcgacgtgc 374 ||||||||||||||||||||||||||||| Sbjct: 488016 ccaggtcatcggcgccgtcgtcgacgtgc 488044
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 346 ccaggtcatcggcgccgtcgtcgacgtgc 374 ||||||||||||||||||||||||||||| Sbjct: 632599 ccaggtcatcggcgccgtcgtcgacgtgc 632627
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 346 ccaggtcatcggcgccgtcgtcgacgtgc 374 ||||||||||||||||||||||||||||| Sbjct: 299329 ccaggtcatcggcgccgtcgtcgacgtgc 299301
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 346 ccaggtcatcggcgccgtcgtcgacgtgc 374 ||||||||||||||||||||||||||||| Sbjct: 475249 ccaggtcatcggcgccgtcgtcgacgtgc 475221
>gb|U96496.1|NSU96496 Nicotiana sylvestris ATPase beta subunit (nsatp2.1.1) mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1987 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 302 atcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggcgcc 361 |||||||| |||||||||||||| || || |||| |||| |||||||||||||| ||| Sbjct: 240 atcaccgatgagttcaccggcgctggttcgatcgggaaggtgtgccaggtcatcggtgcc 299 Query: 362 gtcgt 366 ||||| Sbjct: 300 gtcgt 304
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 347 caggtcatcggcgccgtcgtcgacgtgc 374 |||||||||||||||||||||||||||| Sbjct: 191070 caggtcatcggcgccgtcgtcgacgtgc 191043
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 347 caggtcatcggcgccgtcgtcgacgt 372 |||||||||||||||||||||||||| Sbjct: 2412724 caggtcatcggcgccgtcgtcgacgt 2412749
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 347 caggtcatcggcgccgtcgtcgacgt 372 |||||||||||||||||||||||||| Sbjct: 245939 caggtcatcggcgccgtcgtcgacgt 245914
>ref|XM_962273.1| PREDICTED: Tribolium castaneum hypothetical protein LOC655712 (LOC655712), mRNA Length = 327 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 397 catcctcaccgcgctcgaggtgctcg 422 |||||||||||||||||||||||||| Sbjct: 168 catcctcaccgcgctcgaggtgctcg 193
>emb|X02868.1|NPATP21 Nicotiana plubaginifolia atp2-1 gene for mitochondrial ATP synthase beta subunit Length = 5351 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 305 accgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggcgccgtc 364 ||||| |||||||||||||| || || |||| |||| |||||||||||||| |||||| Sbjct: 630 accgatgagttcaccggcgctggttcgatcgggaaggtgtgccaggtcatcggtgccgtc 689 Query: 365 gt 366 || Sbjct: 690 gt 691
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 347 caggtcatcggcgccgtcgtcgacgt 372 |||||||||||||||||||||||||| Sbjct: 196168 caggtcatcggcgccgtcgtcgacgt 196143
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 346 ccaggtcatcggcgccgtcgtcgacgtgcgcttcgacg 383 ||||||| | ||||||||||| |||||||||||||||| Sbjct: 4545772 ccaggtcctgggcgccgtcgtggacgtgcgcttcgacg 4545735
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 350 gtcatcggcgccgtcgtcgacgtgc 374 ||||||||||||||||||||||||| Sbjct: 585643 gtcatcggcgccgtcgtcgacgtgc 585619
>gb|AF017097.1|AF017097 Paracoccus denitrificans F1-ATPase gamma-subunit (atpC) and F1-ATPase beta-subunit (atpB) genes, partial cds Length = 903 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 347 caggtcatcggcgccgtcgtcgacgtgcgcttcgacg 383 ||||| |||||||||||||||||||||| ||||||| Sbjct: 154 caggtgatcggcgccgtcgtcgacgtgcagttcgacg 190
>ref|XM_654827.1| Aspergillus nidulans FGSC A4 ATP synthase subunit beta (AN2315.2), mRNA Length = 1542 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 346 ccaggtcatcggcgccgtcgtcgacgtg 373 |||||||||||| ||||||||||||||| Sbjct: 141 ccaggtcatcggtgccgtcgtcgacgtg 168
>emb|Z00018.1|RBATP R.blasticus atp operon coding for the 5 subunits of F1-ATPase and 8URFs Length = 12368 Score = 46.1 bits (23), Expect = 0.094 Identities = 26/27 (96%) Strand = Plus / Plus Query: 346 ccaggtcatcggcgccgtcgtcgacgt 372 ||||||||||||||||||||| ||||| Sbjct: 9252 ccaggtcatcggcgccgtcgtggacgt 9278
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 46.1 bits (23), Expect = 0.094 Identities = 26/27 (96%) Strand = Plus / Minus Query: 346 ccaggtcatcggcgccgtcgtcgacgt 372 |||||| |||||||||||||||||||| Sbjct: 4102159 ccaggttatcggcgccgtcgtcgacgt 4102133
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 347 caggtcatcggcgccgtcgtcgacgt 372 ||||||||||||||||| |||||||| Sbjct: 1012367 caggtcatcggcgccgttgtcgacgt 1012342
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 347 caggtcatcggcgccgtcgtcgacgt 372 |||||||||||||| ||||||||||| Sbjct: 1727792 caggtcatcggcgctgtcgtcgacgt 1727767
>gb|AY389025.1| Hydrocotyle verticillata internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 621 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 357 gcgccgtcgtcgacgtgcgcttcgac 382 ||||||||||||||||||||| |||| Sbjct: 587 gcgccgtcgtcgacgtgcgctccgac 612
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 347 caggtcatcggcgccgtcgtcgacgt 372 ||||| |||||||||||||||||||| Sbjct: 866190 caggttatcggcgccgtcgtcgacgt 866165
>gb|AE009468.1| Brucella melitensis 16M chromosome I, section 25 of 195 of the complete sequence Length = 11411 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 347 caggtcatcggcgccgtcgtcgacgt 372 |||||||||||||| ||||||||||| Sbjct: 263 caggtcatcggcgctgtcgtcgacgt 288
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 345 gccaggtcatcggcgccgtcgtcgacgtgc 374 ||||||||||||| || ||||||||||||| Sbjct: 1789979 gccaggtcatcggagcagtcgtcgacgtgc 1790008
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 347 caggtcatcggcgccgtcgtcgacgt 372 |||||||||||||| ||||||||||| Sbjct: 1744708 caggtcatcggcgctgtcgtcgacgt 1744683
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 75 ccgcggccatggcgacgcgccg 96 |||||||||||||||||||||| Sbjct: 176352 ccgcggccatggcgacgcgccg 176373
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 347 caggtcatcggcgccgtcgtcgacgt 372 |||||||||||||| ||||||||||| Sbjct: 1741865 caggtcatcggcgctgtcgtcgacgt 1741840
>dbj|D84449.1|DVUATPASE Desulfovibrio vulgaris genes for proton ATPase gamma subunit and proton ATPase beta subunit, partial cds and complete cds Length = 1665 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 347 caggtcatcggcgccgtcgtcgacgt 372 |||||||||||||||||||| ||||| Sbjct: 201 caggtcatcggcgccgtcgtggacgt 226
>dbj|AB022018.1| Desulfovibrio vulgaris genes for F1-ATPase, complete cds Length = 5506 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 347 caggtcatcggcgccgtcgtcgacgt 372 |||||||||||||||||||| ||||| Sbjct: 3661 caggtcatcggcgccgtcgtggacgt 3686
>gb|DQ440233.1| Aedes aegypti clone AET-272 F0F1-type ATP synthase beta subunit mRNA, complete cds Length = 1515 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 350 gtcatcggcgccgtcgtcgacgtgc 374 |||||||| |||||||||||||||| Sbjct: 124 gtcatcggtgccgtcgtcgacgtgc 148
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 ccaggtcatcggcgccgtcgtcgacgtgc 374 ||||||||||||||| ||||| ||||||| Sbjct: 1003895 ccaggtcatcggcgctgtcgttgacgtgc 1003923
>dbj|AK007308.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700128E15 product:finger protein kox11 (fragment) homolog [Homo sapiens], full insert sequence Length = 2279 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 70 ccgatccgcggccatggcgacgcgc 94 ||||||||||||| ||||||||||| Sbjct: 36 ccgatccgcggccctggcgacgcgc 12
>dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1151A10 Length = 124344 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 cggcgccgtcgtcgacgtgcg 375 ||||||||||||||||||||| Sbjct: 113680 cggcgccgtcgtcgacgtgcg 113660
>ref|NM_189780.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1191 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 gcgcttcgacgagggcctcccgcc 396 ||||||||||||| |||||||||| Sbjct: 228 gcgcttcgacgagcgcctcccgcc 251
>gb|AY702091.1| Nonomuraea sp. ATCC 39727 atp operon, complete sequence Length = 7760 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 gtcatcggcgccgtcgtcgacgtg 373 |||| ||||||||||||||||||| Sbjct: 5907 gtcaccggcgccgtcgtcgacgtg 5930
>ref|XM_365465.1| Magnaporthe grisea 70-15 hypothetical protein (MG02167.4) partial mRNA Length = 1962 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 caagatcaccgacgagttca 317 |||||||||||||||||||| Sbjct: 492 caagatcaccgacgagttca 511
>gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 atrazine catabolic region, partial sequence Length = 161264 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ccaggtcatcggcgccgtcg 365 |||||||||||||||||||| Sbjct: 54604 ccaggtcatcggcgccgtcg 54623
>ref|NM_033456.1| Homo sapiens potassium channel, subfamily K, member 7 (KCNK7), transcript variant E, mRNA Length = 1478 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcctcccgcccatcctcaccgcg 409 ||||||||||||| |||||||||| Sbjct: 1429 ggcctcccgcccaccctcaccgcg 1406
>ref|NM_033455.1| Homo sapiens potassium channel, subfamily K, member 7 (KCNK7), transcript variant D, mRNA Length = 1485 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcctcccgcccatcctcaccgcg 409 ||||||||||||| |||||||||| Sbjct: 1436 ggcctcccgcccaccctcaccgcg 1413
>ref|NM_033348.1| Homo sapiens potassium channel, subfamily K, member 7 (KCNK7), transcript variant B, mRNA Length = 1388 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcctcccgcccatcctcaccgcg 409 ||||||||||||| |||||||||| Sbjct: 1337 ggcctcccgcccaccctcaccgcg 1314
>ref|NM_033347.1| Homo sapiens potassium channel, subfamily K, member 7 (KCNK7), transcript variant A, mRNA Length = 1312 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcctcccgcccatcctcaccgcg 409 ||||||||||||| |||||||||| Sbjct: 1263 ggcctcccgcccaccctcaccgcg 1240
>ref|NM_005714.1| Homo sapiens potassium channel, subfamily K, member 7 (KCNK7), transcript variant C, mRNA Length = 1577 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcctcccgcccatcctcaccgcg 409 ||||||||||||| |||||||||| Sbjct: 1528 ggcctcccgcccaccctcaccgcg 1505
>ref|XM_748496.1| Aspergillus fumigatus Af293 ATP synthase F1, subunit beta (Afu5g10550) partial mRNA Length = 1560 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 346 ccaggtcatcggcgccgtcgtcgacgtg 373 ||||||||| || ||||||||||||||| Sbjct: 156 ccaggtcattggtgccgtcgtcgacgtg 183
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 ttcaccggcgccggctccgtcggc 337 ||||||||||||| |||||||||| Sbjct: 2403184 ttcaccggcgccgtctccgtcggc 2403207
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 gcgcttcgacgagggcctcc 392 |||||||||||||||||||| Sbjct: 696278 gcgcttcgacgagggcctcc 696297
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 300 agatcaccgacgagttcaccggcgccgg 327 |||||| |||||||| |||||||||||| Sbjct: 217222 agatcatcgacgagtacaccggcgccgg 217249 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 354 tcggcgccgtcgtcgacgtgcgct 377 ||||||||| |||||||||||||| Sbjct: 107817 tcggcgccgacgtcgacgtgcgct 107794
>emb|AJ507836.1|ANI507836 Arthrobacter nicotinovorans pAO1 plasmid sequence Length = 165137 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 ggtcatcggcgccgtcgtcg 368 |||||||||||||||||||| Sbjct: 20282 ggtcatcggcgccgtcgtcg 20301
>gb|DQ122925.1| Chlamydomonas incerta chloroplast glyceraldehyde-3-phosphate dehydrogenase (GapA) gene, partial cds; nuclear gene for chloroplast product Length = 1772 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gcgccgtcgtcgacgtgcgc 376 |||||||||||||||||||| Sbjct: 219 gcgccgtcgtcgacgtgcgc 238
>gb|DQ122894.1| Chlamydomonas incerta chloroplast glyceraldehyde-3-phosphate dehydrogenase (GapA) mRNA, partial cds; nuclear gene for chloroplast product Length = 1708 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gcgccgtcgtcgacgtgcgc 376 |||||||||||||||||||| Sbjct: 65 gcgccgtcgtcgacgtgcgc 84
>gb|AE006004.1| Caulobacter crescentus CB15 section 330 of 359 of the complete genome Length = 14710 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 ccaggtcatcggcgccgtcgtcga 369 |||| ||||||||||||||||||| Sbjct: 2945 ccagatcatcggcgccgtcgtcga 2922
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ccggcgccggctccgtcggccagg 341 ||||||||||| |||||||||||| Sbjct: 23058777 ccggcgccggcgccgtcggccagg 23058800
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431G06 Length = 140466 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 gcgcttcgacgagggcctcccgcc 396 ||||||||||||| |||||||||| Sbjct: 96699 gcgcttcgacgagcgcctcccgcc 96676
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 tccgtcggccaggtctgccaggtc 352 |||| ||||||||||||||||||| Sbjct: 2797876 tccggcggccaggtctgccaggtc 2797899
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ccggcgccggctccgtcggccagg 341 ||||||||||| |||||||||||| Sbjct: 133991 ccggcgccggcgccgtcggccagg 134014
>gb|AE005071.1| Halobacterium sp. NRC-1 section 102 of 170 of the complete genome Length = 10826 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 gagttcaccggcgccggctccgtc 334 ||||||||||||| |||||||||| Sbjct: 9205 gagttcaccggcggcggctccgtc 9182
>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1699_E05 Length = 170666 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ccggcgccggctccgtcggccagg 341 ||||||||||| |||||||||||| Sbjct: 2961 ccggcgccggcgccgtcggccagg 2984
>dbj|AK108612.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A11, full insert sequence Length = 1582 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ccggcgccggctccgtcggccagg 341 ||||||||||| |||||||||||| Sbjct: 186 ccggcgccggcgccgtcggccagg 209
>dbj|AK058479.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C08, full insert sequence Length = 1686 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 gcgcttcgacgagggcctcccgcc 396 ||||||||||||| |||||||||| Sbjct: 324 gcgcttcgacgagcgcctcccgcc 347
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ccgcgctcgaggtgctcgac 424 |||||||||||||||||||| Sbjct: 22988 ccgcgctcgaggtgctcgac 22969
>gb|AF110524.1|AF110524 Homo sapiens two pore domain K+ channel subunit C mRNA, complete cds Length = 1577 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcctcccgcccatcctcaccgcg 409 ||||||||||||| |||||||||| Sbjct: 1528 ggcctcccgcccaccctcaccgcg 1505
>gb|AF110523.1|AF110523 Homo sapiens two pore domain K+ channel subunit B mRNA, complete cds Length = 1388 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcctcccgcccatcctcaccgcg 409 ||||||||||||| |||||||||| Sbjct: 1337 ggcctcccgcccaccctcaccgcg 1314
>gb|AF110522.1|AF110522 Homo sapiens two pore domain K+ channel subunit A mRNA, complete cds Length = 1312 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcctcccgcccatcctcaccgcg 409 ||||||||||||| |||||||||| Sbjct: 1263 ggcctcccgcccaccctcaccgcg 1240
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cgacgagttcaccggcgccg 326 |||||||||||||||||||| Sbjct: 4593856 cgacgagttcaccggcgccg 4593875
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 359 gccgtcgtcgacgtgcgcttcgacgagg 386 ||||||||||||||| | |||||||||| Sbjct: 1207459 gccgtcgtcgacgtgtgattcgacgagg 1207432
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 cgctcgaggtgctcgacaac 427 |||||||||||||||||||| Sbjct: 3043947 cgctcgaggtgctcgacaac 3043966
>gb|L27668.1|CRECPGAPA Chlamydomonas reinhardtii chloroplast glyceraldehyde-3-phosphate dehydrogenase (gapA) gene, complete cds Length = 2219 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gcgccgtcgtcgacgtgcgc 376 |||||||||||||||||||| Sbjct: 575 gcgccgtcgtcgacgtgcgc 594
>dbj|AP001362.5| Homo sapiens genomic DNA, chromosome 11, clone:RP11-856B14, complete sequence Length = 211382 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggcctcccgcccatcctcaccgcg 409 ||||||||||||| |||||||||| Sbjct: 73501 ggcctcccgcccaccctcaccgcg 73524 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,614,514 Number of Sequences: 3902068 Number of extensions: 1614514 Number of successful extensions: 46129 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43828 Number of HSP's gapped (non-prelim): 2300 length of query: 430 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 408 effective length of database: 17,147,199,772 effective search space: 6996057506976 effective search space used: 6996057506976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
