ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63d02 |
|---|---|
| Clone Library Name | barley_pub |
>LYAM3_MOUSE (Q01102) P-selectin precursor (Granule membrane protein 140)| (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion molecule 3) (LECAM3) (CD62P antigen) Length = 768 Score = 37.0 bits (84), Expect = 0.025 Identities = 24/80 (30%), Positives = 30/80 (37%) Frame = +2 Query: 98 PCRSSRSHCQSLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWT 277 P + CQSLE P G MA +P+A +P S+T G G W Sbjct: 254 PPKCDAVQCQSLEAPPHGTMACMHPIAAFAYDSSCKFECQPGYRARGSNTLHCTGSGQW- 312 Query: 278 LWTRTSAPASSPTARWCRPP 337 S P + A C PP Sbjct: 313 -----SEPLPTCEAIACEPP 327
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 32.3 bits (72), Expect = 0.61 Identities = 20/91 (21%), Positives = 34/91 (37%) Frame = +2 Query: 167 NPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTLWTRTSAPASSPTARWCRPPTTG 346 +P +T+ A+S P+ +S+T+ + T T +A ++PT P TT Sbjct: 72 SPSSTSTQSSSTAATSSSAPSTASSTTSIPTSTSTETTTTTPTASTTTPTTTTAAP-TTA 130 Query: 347 XXXXXXXXXXXXXXXXXXXCSPASGCPTTGT 439 + A+ PTT T Sbjct: 131 ATTTAVTTAASTSAETTTATATATSTPTTTT 161 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/87 (22%), Positives = 30/87 (34%) Frame = +2 Query: 179 TTXXXXXXXASSEPWPAGGASSTARTRGMGSWTLWTRTSAPASSPTARWCRPPTTGXXXX 358 TT A++ A++TA T + T T T+A SS T TT Sbjct: 184 TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTSSATTA---ATTTAATTT 240 Query: 359 XXXXXXXXXXXXXXXCSPASGCPTTGT 439 + +G PT+G+ Sbjct: 241 AATTTAATTTAATTTAATTTGSPTSGS 267
>DIP2C_HUMAN (Q9Y2E4) Disco-interacting protein 2 homolog C| Length = 1556 Score = 32.3 bits (72), Expect = 0.61 Identities = 18/54 (33%), Positives = 22/54 (40%) Frame = +3 Query: 3 TTPASQQSQTLLAGSGRQHIDREDPTN*HLARHVVPPDPTANRWRHSQQAAWPR 164 TT + S T GSG H + H+ H PPD T HS Q P+ Sbjct: 172 TTSTTSSSSTQSGGSGAAHRLADVMAQTHIENHSAPPDVTTYTSEHSIQVERPQ 225
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 32.3 bits (72), Expect = 0.61 Identities = 20/91 (21%), Positives = 34/91 (37%) Frame = +2 Query: 167 NPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTLWTRTSAPASSPTARWCRPPTTG 346 +P +T+ A+S P+ +S+T+ + T T +A ++PT P TT Sbjct: 72 SPSSTSTQSSSTAATSSSAPSTASSTTSIPTSTSTETTTTTPTASTTTPTTTTAAP-TTA 130 Query: 347 XXXXXXXXXXXXXXXXXXXCSPASGCPTTGT 439 + A+ PTT T Sbjct: 131 ATTTAVTTAASTSAETTTATATATSTPTTTT 161 Score = 29.6 bits (65), Expect = 3.9 Identities = 20/98 (20%), Positives = 33/98 (33%) Frame = +2 Query: 146 AGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTLWTRTSAPASSPTARW 325 A + ATT A++ A++TA T + T T T+A ++ T Sbjct: 246 AATTSSTTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAAT--- 302 Query: 326 CRPPTTGXXXXXXXXXXXXXXXXXXXCSPASGCPTTGT 439 TT + +G PT+G+ Sbjct: 303 ----TTAATTTAATTTAATTTAATTTAATTTGSPTSGS 336
>Y4HP_RHISN (P50360) Hypothetical 61.7 kDa protein y4hP| Length = 552 Score = 31.6 bits (70), Expect = 1.0 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%) Frame = +1 Query: 121 LPIVGDIASRLHGQEKPRGDDTTPPAPARVLGTVASRWRELHGENSWDGLLDPL------ 282 +P+ I + + E+ GDDTT P AR T W + + + G P Sbjct: 247 MPVFDLIEAHVFAAERLHGDDTTIPIQARDKCTTGRIWTYVCDDRPFGGTAPPAAIYYAS 306 Query: 283 ----DPHLRSSIISYGEMVQA-AYDGF 348 H + + YG ++Q+ Y+GF Sbjct: 307 SDRRGEHPQKHLAGYGGILQSDCYNGF 333
>CIC_HUMAN (Q96RK0) Protein capicua homolog| Length = 1608 Score = 30.8 bits (68), Expect = 1.8 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +2 Query: 104 RSSRSHCQS-LET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 280 RSS +HC+ L+ P G PVA +SS PA ++S A + +GS T Sbjct: 500 RSSFTHCRPPLDPEPPG--PPDPPVAFGKGYGSAPSSSASSPASSSASAATSFSLGSGTF 557 Query: 281 WTRTSAPASSPTARWCRPPTTG 346 + S S TA RPP G Sbjct: 558 KAQESGQGS--TAGPLRPPPPG 577
>SSPO_BOVIN (P98167) SCO-spondin (Fragment)| Length = 867 Score = 29.6 bits (65), Expect = 3.9 Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 2/55 (3%) Frame = +2 Query: 269 SWTLWTRTSAPASSPTARW--CRPPTTGXXXXXXXXXXXXXXXXXXXCSPASGCP 427 SW+ W+ S P TAR C PP G C P GCP Sbjct: 34 SWSRWSPCSEPCGGVTARHRECHPPQNGGRTCATLPGGPPSTRETRPC-PQDGCP 87
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 29.3 bits (64), Expect = 5.1 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +2 Query: 104 RSSRSHCQ-SLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 280 RSS +HC+ +L+ P G +P A SS PA + S + + +GS T Sbjct: 500 RSSFTHCRPTLDPEPPG---PPDPPAAFSKGYGPTPSSSSSPASTSVSVSTSFSLGSGTF 556 Query: 281 WTRTSAPASSPTARWCRPPTTG 346 T+ S S TA RPP G Sbjct: 557 KTQESGQGS--TAVPLRPPPPG 576
>GUAA_PROAC (Q6A6X1) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 530 Score = 28.9 bits (63), Expect = 6.7 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = +1 Query: 286 PHLRSSIISYGEMVQAAYDGFNTERRSPHCGACFYAYEDL---LAGVGVPHHGHTTRS 450 PH S +S+G+ V A +GF+T R+ GA A+ED+ L GV H T S Sbjct: 137 PHTISVWMSHGDSVSRAPEGFSTLART--AGAPVAAFEDVERRLVGVQWHPEVHHTES 192
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 28.9 bits (63), Expect = 6.7 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Frame = +2 Query: 38 RRQW*AAHRSRRSHELTPRAPCRSSR----SHCQSLET*PAGCMAKRNPVATTXXXXXXX 205 RR HR R S T + SS S S T A + P Sbjct: 149 RRHRKPGHRRRTSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPRATPPTWQRSTSMPP 208 Query: 206 ASSEPWP--------AGGAS-STARTRGMGSWTLWTRTSAPASSPTARWCRPP 337 + + PWP AG AS +T RTR SW+ + SA ++ R PP Sbjct: 209 SRASPWPRYGRRWRTAGTASRTTTRTRTGRSWSTGSIVSAAPTAMPRRSTSPP 261
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +3 Query: 54 QHIDREDPTN*HLARHVVPPDPTANRWRHSQQAAWPRETPWRRHD 188 +H D HL+RHV P D ++ R+ + + RRHD Sbjct: 448 RHDSHRDHERHHLSRHVRPSDEGESKCRYEAHSHTRHDEHTRRHD 492
>ARGD_ANASP (P54752) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 427 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = -3 Query: 348 EPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 217 +P+V G H++ D + E + + E RV A+ + P G G Sbjct: 178 DPLVPGFHYVNYNDISAVEAAISELDEGDYRVAAILIEPLQGEG 221
>MYCL1_MOUSE (P10166) L-myc-1 proto-oncogene protein| Length = 368 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/37 (37%), Positives = 15/37 (40%) Frame = +2 Query: 215 EPWPAGGASSTARTRGMGSWTLWTRTSAPASSPTARW 325 EPWP GGA A +RG W R A W Sbjct: 62 EPWPGGGAGDEAESRGHSK--AWGRNYASIIRRDCMW 96
>ARGD_SYNEL (P59322) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 412 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -3 Query: 348 EPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 217 +P+V G ++ D E V + +P P+V A+ L P G G Sbjct: 163 DPLVPGFAYVPYNDLGALEALVASLDQPQPQVAAILLEPLQGEG 206
>IGHE_MOUSE (P06336) Ig epsilon chain C region| Length = 421 Score = 28.5 bits (62), Expect = 8.7 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Frame = +2 Query: 65 SRRSHELTPRAPCRSSRSHCQSLET*PAGCMAKR---NPVATTXXXXXXXASSEPWPAGG 235 S R+ +L P PC+ + S GC+ K NPV T S+ +PA G Sbjct: 1 SIRNPQLYPLKPCKGTASMT-------LGCLVKDYFPNPVTVTWYSDSLNMSTVNFPALG 53 Query: 236 ASSTARTRGMGSW 274 + T + SW Sbjct: 54 SELKVTTSQVTSW 66
>SYWM_CAEEL (P46579) Probable tryptophanyl-tRNA synthetase, mitochondrial (EC| 6.1.1.2) (Tryptophan--tRNA ligase) (TrpRS) Length = 650 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Frame = -2 Query: 160 GHAACWLCLQRLAVG--SGGTTWRARC 86 GH CW C+Q AV S +T ARC Sbjct: 270 GHLFCWTCIQEHAVAATSSASTSSARC 296
>ARGD_PROMA (Q7VAS9) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 395 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = -3 Query: 354 GVEPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 217 G EP+V G + D + + +++ PRV A+ + P G G Sbjct: 144 GFEPLVEGFEFFSFNDSNSVQDLYENLEKDEPRVAAILIEPIQGEG 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.135 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,296,465 Number of Sequences: 219361 Number of extensions: 1433613 Number of successful extensions: 4607 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4603 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
