ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63c09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 204 bits (103), Expect = 2e-49 Identities = 266/319 (83%), Gaps = 1/319 (0%) Strand = Plus / Plus Query: 117 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 176 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 88573 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 88632 Query: 177 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 236 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 88633 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 88692 Query: 237 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 296 |||||||||||| |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 88693 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 88752 Query: 297 gctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcccc 356 || |||||||||||| |||| || |||||||||||||||| |||| |||||| || Sbjct: 88753 gcagtgccgcctcgccaagaccaacgcgtgcgccaccagctgcgacggcgcgccgtcgcc 88812 Query: 357 ggggtgtctgaacgacacctgtagcgggttcccggag-acaccgtcacgcgcgtcagcac 415 || || || ||||||||||| |||||||||||||| |||| ||||||| ||||||||| Sbjct: 88813 ggcctgcctcaacgacacctgcggcgggttcccggagaacacggtcacgcacgtcagcac 88872 Query: 416 cggcgggaacctcatcacc 434 | |||| ||| |||||||| Sbjct: 88873 cagcggcaacgtcatcacc 88891 Score = 176 bits (89), Expect = 4e-41 Identities = 249/301 (82%), Gaps = 1/301 (0%) Strand = Plus / Plus Query: 112 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 171 ||||| |||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 91061 ccgagagccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtg 91120 Query: 172 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 231 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| || Sbjct: 91121 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacg 91180 Query: 232 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcg 291 ||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||| | Sbjct: 91181 ctctgggtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcggg 91240 Query: 292 tccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccg 351 ||||||| |||||||||| | |||| | | |||| || ||||||| ||||| ||| Sbjct: 91241 tccaagccgtgccgcctcaccaagaccggcggctgcttcaacagctgcttcggcgcgcca 91300 Query: 352 tccccggggtgtctgaacgacacctgtagcgggttcccgga-gacaccgtcacgcgcgtc 410 ||||||| || || |||| |||||| |||||||||||||| |||| |||||||||||| Sbjct: 91301 tccccggcctgcctcaacggcacctgcagcgggttcccggataacacggtcacgcgcgtc 91360 Query: 411 a 411 | Sbjct: 91361 a 91361 Score = 174 bits (88), Expect = 2e-40 Identities = 266/324 (82%), Gaps = 1/324 (0%) Strand = Plus / Plus Query: 111 cccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacggg 170 ||||||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| Sbjct: 95445 cccgagcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgat 95504 Query: 171 cttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctc 230 ||| ||||||| ||||| || || |||| ||||||| | ||||| | |||||| Sbjct: 95505 gttctggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccat 95564 Query: 231 gctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgc 290 |||||||||||||||||| ||||||||| ||| ||||| || ||| |||||||||||| Sbjct: 95565 gctctgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgg 95624 Query: 291 gtccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagcc 350 |||||||| ||||||||||||||||| | ||||| |||||| ||||| ||| | | Sbjct: 95625 gtccaagccttgccgcctcgcgaagagcgccgcctgtgccaccggctgctccggtgcggc 95684 Query: 351 gtccccggggtgtctgaacgacacctgtagcgggttcccggag-acaccgtcacgcgcgt 409 ||||||||| || || ||||||||||| | ||||||||||||| |||| |||||||||| Sbjct: 95685 gtccccgggctgcctcaacgacacctgcaccgggttcccggagtacactatcacgcgcgt 95744 Query: 410 cagcaccggcgggaacctcatcac 433 |||||||||||| ||| ||||||| Sbjct: 95745 cagcaccggcggcaacatcatcac 95768 Score = 147 bits (74), Expect = 3e-32 Identities = 152/178 (85%) Strand = Plus / Plus Query: 112 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 171 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 102448 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 102507 Query: 172 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 231 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 102508 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 102567 Query: 232 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 289 |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 102568 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 102625 Score = 58.0 bits (29), Expect = 2e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 367 aacgacacctgtagcgggttcccggaga-caccgtcacgcgcgtcagcaccggcgggaac 425 ||||||||||| |||| ||||||| ||| ||||| |||| |||||||||||| ||| ||| Sbjct: 102703 aacgacacctgcagcgagttcccgaagaacaccgccacgagcgtcagcaccgccggcaac 102762 Query: 426 ctcatcacc 434 |||||||| Sbjct: 102763 atcatcacc 102771
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 204 bits (103), Expect = 2e-49 Identities = 266/319 (83%), Gaps = 1/319 (0%) Strand = Plus / Plus Query: 117 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 176 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 19487861 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 19487920 Query: 177 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 236 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 19487921 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 19487980 Query: 237 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 296 |||||||||||| |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 19487981 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 19488040 Query: 297 gctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcccc 356 || |||||||||||| |||| || |||||||||||||||| |||| |||||| || Sbjct: 19488041 gcagtgccgcctcgccaagaccaacgcgtgcgccaccagctgcgacggcgcgccgtcgcc 19488100 Query: 357 ggggtgtctgaacgacacctgtagcgggttcccggag-acaccgtcacgcgcgtcagcac 415 || || || ||||||||||| |||||||||||||| |||| ||||||| ||||||||| Sbjct: 19488101 ggcctgcctcaacgacacctgcggcgggttcccggagaacacggtcacgcacgtcagcac 19488160 Query: 416 cggcgggaacctcatcacc 434 | |||| ||| |||||||| Sbjct: 19488161 cagcggcaacgtcatcacc 19488179 Score = 176 bits (89), Expect = 4e-41 Identities = 249/301 (82%), Gaps = 1/301 (0%) Strand = Plus / Plus Query: 112 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 171 ||||| |||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 19490349 ccgagagccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtg 19490408 Query: 172 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 231 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| || Sbjct: 19490409 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacg 19490468 Query: 232 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcg 291 ||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||| | Sbjct: 19490469 ctctgggtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcggg 19490528 Query: 292 tccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccg 351 ||||||| |||||||||| | |||| | | |||| || ||||||| ||||| ||| Sbjct: 19490529 tccaagccgtgccgcctcaccaagaccggcggctgcttcaacagctgcttcggcgcgcca 19490588 Query: 352 tccccggggtgtctgaacgacacctgtagcgggttcccgga-gacaccgtcacgcgcgtc 410 ||||||| || || |||| |||||| |||||||||||||| |||| |||||||||||| Sbjct: 19490589 tccccggcctgcctcaacggcacctgcagcgggttcccggataacacggtcacgcgcgtc 19490648 Query: 411 a 411 | Sbjct: 19490649 a 19490649 Score = 174 bits (88), Expect = 2e-40 Identities = 266/324 (82%), Gaps = 1/324 (0%) Strand = Plus / Plus Query: 111 cccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacggg 170 ||||||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| Sbjct: 19494733 cccgagcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgat 19494792 Query: 171 cttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctc 230 ||| ||||||| ||||| || || |||| ||||||| | ||||| | |||||| Sbjct: 19494793 gttctggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccat 19494852 Query: 231 gctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgc 290 |||||||||||||||||| ||||||||| ||| ||||| || ||| |||||||||||| Sbjct: 19494853 gctctgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgg 19494912 Query: 291 gtccaagctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagcc 350 |||||||| ||||||||||||||||| | ||||| |||||| ||||| ||| | | Sbjct: 19494913 gtccaagccttgccgcctcgcgaagagcgccgcctgtgccaccggctgctccggtgcggc 19494972 Query: 351 gtccccggggtgtctgaacgacacctgtagcgggttcccggag-acaccgtcacgcgcgt 409 ||||||||| || || ||||||||||| | ||||||||||||| |||| |||||||||| Sbjct: 19494973 gtccccgggctgcctcaacgacacctgcaccgggttcccggagtacactatcacgcgcgt 19495032 Query: 410 cagcaccggcgggaacctcatcac 433 |||||||||||| ||| ||||||| Sbjct: 19495033 cagcaccggcggcaacatcatcac 19495056 Score = 147 bits (74), Expect = 3e-32 Identities = 152/178 (85%) Strand = Plus / Plus Query: 112 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 171 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 19501736 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 19501795 Query: 172 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 231 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 19501796 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 19501855 Query: 232 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 289 |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 19501856 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 19501913 Score = 58.0 bits (29), Expect = 2e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 367 aacgacacctgtagcgggttcccggaga-caccgtcacgcgcgtcagcaccggcgggaac 425 ||||||||||| |||| ||||||| ||| ||||| |||| |||||||||||| ||| ||| Sbjct: 19501991 aacgacacctgcagcgagttcccgaagaacaccgccacgagcgtcagcaccgccggcaac 19502050 Query: 426 ctcatcacc 434 |||||||| Sbjct: 19502051 atcatcacc 19502059
>dbj|AK070554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061A08, full insert sequence Length = 1474 Score = 182 bits (92), Expect = 6e-43 Identities = 264/319 (82%), Gaps = 3/319 (0%) Strand = Plus / Plus Query: 117 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 176 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 143 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 202 Query: 177 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 236 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 203 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 262 Query: 237 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcgcgtccaa 296 ||||||||| | |||||||||||||| ||||| |||||| |||||||||||| |||||| Sbjct: 263 ggtggactgag--gccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 320 Query: 297 gctgtgccgcctcgcgaagagtgtggcctgcgccaccagctgcgtcggcaagccgtcccc 356 || |||||||||||| |||| || |||||||||||||||| |||| |||||| || Sbjct: 321 gcagtgccgcctcgccaagaccaacgcgtgcgccaccagctgcgacggcgcgccgtcgcc 380 Query: 357 ggggtgtctgaacgacacctgtagcgggttcccggag-acaccgtcacgcgcgtcagcac 415 || || || ||||||||||| |||||||||||||| |||| ||||||| ||||||||| Sbjct: 381 ggcctgcctcaacgacacctgcggcgggttcccggagaacacggtcacgcacgtcagcac 440 Query: 416 cggcgggaacctcatcacc 434 | |||| ||| |||||||| Sbjct: 441 cagcggcaacgtcatcacc 459
>dbj|AK122177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148M15, full insert sequence Length = 1741 Score = 147 bits (74), Expect = 3e-32 Identities = 152/178 (85%) Strand = Plus / Plus Query: 112 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 171 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 327 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 386 Query: 172 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 231 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 387 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 446 Query: 232 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtgccgtgcg 289 |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 447 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgtgcggtgcg 504 Score = 58.0 bits (29), Expect = 2e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 367 aacgacacctgtagcgggttcccggaga-caccgtcacgcgcgtcagcaccggcgggaac 425 ||||||||||| |||| ||||||| ||| ||||| |||| |||||||||||| ||| ||| Sbjct: 582 aacgacacctgcagcgagttcccgaagaacaccgccacgagcgtcagcaccgccggcaac 641 Query: 426 ctcatcacc 434 |||||||| Sbjct: 642 atcatcacc 650
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 61.9 bits (31), Expect = 2e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 172 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 228 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 15504957 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 15505016 Query: 229 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 282 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 15505017 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 15505076 Query: 283 ccgtgcgcgtccaagctgtgccgcctcg 310 || |||| |||||||| |||||||||| Sbjct: 15505077 ccatgcgggtccaagccctgccgcctcg 15505104
>dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0689B09 Length = 144932 Score = 61.9 bits (31), Expect = 2e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 172 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 228 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 25812 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 25871 Query: 229 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 282 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 25872 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 25931 Query: 283 ccgtgcgcgtccaagctgtgccgcctcg 310 || |||| |||||||| |||||||||| Sbjct: 25932 ccatgcgggtccaagccctgccgcctcg 25959
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 61.9 bits (31), Expect = 2e-06 Identities = 119/148 (80%), Gaps = 9/148 (6%) Strand = Plus / Plus Query: 172 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 228 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 154249 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 154308 Query: 229 tcgctctgggtggactgcga------cgccgggtacgtgtcctcgtcctacgcgggcgtg 282 ||||||||||||||||||| ||||||||||| ||| || || ||||| |||||| Sbjct: 154309 acgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgccggcgtg 154368 Query: 283 ccgtgcgcgtccaagctgtgccgcctcg 310 || |||| |||||||| |||||||||| Sbjct: 154369 ccatgcgggtccaagccctgccgcctcg 154396
>ref|XM_512475.1| PREDICTED: Pan troglodytes similar to myosin IXB (LOC455819), mRNA Length = 2636 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 318 tgtggcctgcgccaccagctgc 339 |||||||||||||||||||||| Sbjct: 542 tgtggcctgcgccaccagctgc 521
>ref|NM_004145.2| Homo sapiens myosin IXB (MYO9B), mRNA Length = 7488 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 318 tgtggcctgcgccaccagctgc 339 |||||||||||||||||||||| Sbjct: 390 tgtggcctgcgccaccagctgc 369
>gb|AC020908.7| Homo sapiens chromosome 19 clone CTD-2528A14, complete sequence Length = 174034 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 318 tgtggcctgcgccaccagctgc 339 |||||||||||||||||||||| Sbjct: 173127 tgtggcctgcgccaccagctgc 173106
>gb|AC092476.1|AC092476 Homo sapiens chromosome 19 clone LLNLR-231E1, complete sequence Length = 2400 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 318 tgtggcctgcgccaccagctgc 339 |||||||||||||||||||||| Sbjct: 95 tgtggcctgcgccaccagctgc 74
>dbj|AB209997.1| Homo sapiens mRNA for MYO9B variant protein, partial cds, clone: ef05385 Length = 7607 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 318 tgtggcctgcgccaccagctgc 339 |||||||||||||||||||||| Sbjct: 537 tgtggcctgcgccaccagctgc 516
>gb|U42391.1|HSU42391 Human myosin-IXb mRNA, complete cds Length = 6069 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 318 tgtggcctgcgccaccagctgc 339 |||||||||||||||||||||| Sbjct: 390 tgtggcctgcgccaccagctgc 369
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ctctgccagccagccctcagc 33 ||||||||||||||||||||| Sbjct: 2946487 ctctgccagccagccctcagc 2946467
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 ccgagcgccgtggtgctgccggtga 136 ||||||||||||||||||| ||||| Sbjct: 1844748 ccgagcgccgtggtgctgctggtga 1844772
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 aggtcccggtgacggccgtg 210 |||||||||||||||||||| Sbjct: 3188471 aggtcccggtgacggccgtg 3188490
>ref|XM_844545.1| PREDICTED: Canis familiaris similar to growth factor receptor-bound protein 10 isoform a (LOC607755), mRNA Length = 1323 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 cgcgcgtcagcaccggcggg 422 |||||||||||||||||||| Sbjct: 328 cgcgcgtcagcaccggcggg 309
>emb|CT009536.7| Mouse DNA sequence from clone RP23-25A7 on chromosome 14, complete sequence Length = 239515 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tctgccagccagccctcagc 33 |||||||||||||||||||| Sbjct: 131523 tctgccagccagccctcagc 131504
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cgtgctcgtgccgcgcggcc 102 |||||||||||||||||||| Sbjct: 4935908 cgtgctcgtgccgcgcggcc 4935927
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cctacgcgggcgtgccgtgc 288 |||||||||||||||||||| Sbjct: 740360 cctacgcgggcgtgccgtgc 740379
>gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940122D9, complete sequence Length = 114898 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 tggcctgcgccaccagctgc 339 |||||||||||||||||||| Sbjct: 9582 tggcctgcgccaccagctgc 9601
>gb|U18777.1|MAU18777 Mycobacterium avium plasmid pLR7 Rep gene, complete cds Length = 1828 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cctacgcgggcgtgccgtgc 288 |||||||||||||||||||| Sbjct: 288 cctacgcgggcgtgccgtgc 307 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,852,587 Number of Sequences: 3902068 Number of extensions: 1852587 Number of successful extensions: 36889 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36471 Number of HSP's gapped (non-prelim): 403 length of query: 434 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 412 effective length of database: 17,147,199,772 effective search space: 7064646306064 effective search space used: 7064646306064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
