ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63c08 |
|---|---|
| Clone Library Name | barley_pub |
>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)| Length = 372 Score = 35.4 bits (80), Expect = 0.056 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +1 Query: 115 LIPGLPEEVARECLIRVGFDQLPAVRRISRQWKEEVESPGYGRLRRAEGLARPVL 279 LI GLP ++A CL+R+ + R +S W + + +P + +++ ++ P L Sbjct: 28 LISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYL 82
>TRUD_GEOMG (Q39R76) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 404 Score = 32.7 bits (73), Expect = 0.37 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +1 Query: 166 GFDQLPAVRRISRQWKEEVESPGYGRLRRAEGLARPVLAMVQAQPERV 309 G L A+RR++R K GY ++ A G+ R +++ + +PE V Sbjct: 51 GVTTLDAIRRLARALKLSERDVGYAGMKDARGVTRQTVSLPRMKPEEV 98
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 31.2 bits (69), Expect = 1.1 Identities = 24/84 (28%), Positives = 31/84 (36%) Frame = -3 Query: 320 GPGSTRSGCAWTMASTGXXXXXXXXXXXXPGDSTSSFHCREMRRTAGSWSNPTRMRHSLA 141 G G + SG + G S SS TA + T+ R SLA Sbjct: 1202 GDGGSTSGSGSDSNGSSGVSTKSSSGSDTSGSSDSSGANGAFSATAQPSTRTTKTRSSLA 1261 Query: 140 TSSGNPGIRSAIADASKQLLINEL 69 T S AI DA K ++N+L Sbjct: 1262 TVSPISAAEQAIIDAQKADVMNQL 1285
>ACPH_SHISS (Q3Z505) Acyl carrier protein phosphodiesterase (EC 3.1.4.14) (ACP| phosphodiesterase) Length = 193 Score = 29.6 bits (65), Expect = 3.1 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Frame = +1 Query: 46 SFLAHFTSSSLMSSCFEASAMADLIPGLPEE---------VARECLIRVGFDQLPAVRRI 198 +FLAH + L S + +AD + G PEE + I V D LP VR Sbjct: 2 NFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVRE- 60 Query: 199 SRQW 210 +R+W Sbjct: 61 AREW 64
>ACPH_SHIBS (Q325J7) Acyl carrier protein phosphodiesterase (EC 3.1.4.14) (ACP| phosphodiesterase) Length = 193 Score = 29.6 bits (65), Expect = 3.1 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Frame = +1 Query: 46 SFLAHFTSSSLMSSCFEASAMADLIPGLPEE---------VARECLIRVGFDQLPAVRRI 198 +FLAH + L S + +AD + G PEE + I V D LP VR Sbjct: 2 NFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVRE- 60 Query: 199 SRQW 210 +R+W Sbjct: 61 AREW 64
>ACPH_ECOLI (P21515) Acyl carrier protein phosphodiesterase (EC 3.1.4.14) (ACP| phosphodiesterase) Length = 193 Score = 29.6 bits (65), Expect = 3.1 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Frame = +1 Query: 46 SFLAHFTSSSLMSSCFEASAMADLIPGLPEE---------VARECLIRVGFDQLPAVRRI 198 +FLAH + L S + +AD + G PEE + I V D LP VR Sbjct: 2 NFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVRE- 60 Query: 199 SRQW 210 +R+W Sbjct: 61 AREW 64
>ACPH_ECOL6 (Q8FKC6) Acyl carrier protein phosphodiesterase (EC 3.1.4.14) (ACP| phosphodiesterase) Length = 193 Score = 29.6 bits (65), Expect = 3.1 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Frame = +1 Query: 46 SFLAHFTSSSLMSSCFEASAMADLIPGLPEE---------VARECLIRVGFDQLPAVRRI 198 +FLAH + L S + +AD + G PEE + I V D LP VR Sbjct: 2 NFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVRE- 60 Query: 199 SRQW 210 +R+W Sbjct: 61 AREW 64
>ACPH_ECO57 (Q8XE96) Acyl carrier protein phosphodiesterase (EC 3.1.4.14) (ACP| phosphodiesterase) Length = 193 Score = 29.6 bits (65), Expect = 3.1 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Frame = +1 Query: 46 SFLAHFTSSSLMSSCFEASAMADLIPGLPEE---------VARECLIRVGFDQLPAVRRI 198 +FLAH + L S + +AD + G PEE + I V D LP VR Sbjct: 2 NFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVRE- 60 Query: 199 SRQW 210 +R+W Sbjct: 61 AREW 64
>KSP1_YEAST (P38691) Serine/threonine-protein kinase KSP1 (EC 2.7.11.1)| Length = 1029 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 194 RRTAGSWSNPTRMRHSLATSSGNPGIRSAIADASKQLL 81 RR++ + SNP M +L S +PG +S+ K LL Sbjct: 881 RRSSANESNPLHMNKALEKLSSSPGAKSSFVGFPKPLL 918
>FDHA_METJA (P61159) Formate dehydrogenase alpha chain (EC 1.2.1.2)| Length = 673 Score = 28.5 bits (62), Expect = 6.9 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Frame = +1 Query: 16 RTQQIKHALTSFLAHFTSSSLMSSCFEASAMADLIPGLPEEVARECLIRVG---FDQLPA 186 +T I H L H + + MS+CF + AM + I + E+A +C++ +G F+Q P Sbjct: 120 KTNNIDHCAR--LCHSATVTGMSACFGSGAMTNSIEDI--ELA-DCILIIGSNTFEQHPL 174 Query: 187 V-RRISR 204 + RRI R Sbjct: 175 IARRIMR 181
>TRUD_GEOSL (P60347) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 408 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +1 Query: 166 GFDQLPAVRRISRQWKEEVESPGYGRLRRAEGLARPVLAMVQAQPERV 309 G L A+RR+ R GY ++ A G+ R +++ + P V Sbjct: 54 GITTLEAIRRLCRATGAPERDTGYAGMKDARGITRQTVSLPRVTPAEV 101
>NOTC3_MOUSE (Q61982) Neurogenic locus notch homolog protein 3 precursor (Notch| 3) [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2318 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Frame = -3 Query: 416 GAHRPSTGS-SSTVL*LFAGPPLAADADECLCA--GPGS 309 G+ + GS S + L FAGP A D DECL + GPG+ Sbjct: 863 GSCQDGVGSFSCSCLDGFAGPRCARDVDECLSSPCGPGT 901
>NAGZ_THIDA (Q3SKU2) Beta-hexosaminidase (EC 3.2.1.52)| (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) Length = 359 Score = 28.1 bits (61), Expect = 9.0 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = +1 Query: 70 SSLMSSCFEASAM--ADLIPGLPEEVARECLIRVGFDQLPAVRRISRQWKEEVESPGYGR 243 + L + C E A+ A L+ G+ E R R GF +LP +R + W E + Sbjct: 42 AQLAALCEEIHALKAAPLLIGVDHEGGRVQRFRDGFTRLPPMRSLGAIWNEHPQ------ 95 Query: 244 LRRAEGLAR 270 RA LAR Sbjct: 96 --RARELAR 102
>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch| 3) [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2319 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Frame = -3 Query: 416 GAHRPSTGS-SSTVL*LFAGPPLAADADECLCA--GPGS 309 G+ + GS S + L FAGP A D DECL + GPG+ Sbjct: 864 GSCQDGVGSFSCSCLSGFAGPRCARDVDECLSSPCGPGT 902 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,010,100 Number of Sequences: 219361 Number of extensions: 640801 Number of successful extensions: 2264 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2220 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2264 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
