ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast63c08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 210 bits (106), Expect = 3e-51 Identities = 184/210 (87%) Strand = Plus / Plus Query: 115 ctgattccggggttgccggaggaggtggcgagggagtgcctcatacgggtggggttcgac 174 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 22983913 ctgattccggggttgccggaggaggtggcgagggagtgcctcatccgggtggggttcgac 22983972 Query: 175 cagctgccggcggtgcgccgcatctcgcggcagtggaaggaggaggtcgagtcgccgggc 234 ||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 22983973 cagctgccggcggtgcgccgcatctcgcgccagtggaaggcggaggtggagtcgccggcg 22984032 Query: 235 tacggccgcctgcgccgcgccgaggggctggcgcgcccggtgctcgccatggtccaggcg 294 ||| ||||||| | || ||||| ||||||||||||| |||||| |||| |||||| Sbjct: 22984033 tacaaccgcctgaggaaggcggagggcctggcgcgcccggcgctcgcgctggtgcaggcg 22984092 Query: 295 cagcccgagcgcgtcgagcctggcccggcg 324 | || |||| || |||| | ||||||||| Sbjct: 22984093 cggcgtgagctcgccgaggcgggcccggcg 22984122
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502H06 Length = 165630 Score = 210 bits (106), Expect = 3e-51 Identities = 184/210 (87%) Strand = Plus / Plus Query: 115 ctgattccggggttgccggaggaggtggcgagggagtgcctcatacgggtggggttcgac 174 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 158735 ctgattccggggttgccggaggaggtggcgagggagtgcctcatccgggtggggttcgac 158794 Query: 175 cagctgccggcggtgcgccgcatctcgcggcagtggaaggaggaggtcgagtcgccgggc 234 ||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 158795 cagctgccggcggtgcgccgcatctcgcgccagtggaaggcggaggtggagtcgccggcg 158854 Query: 235 tacggccgcctgcgccgcgccgaggggctggcgcgcccggtgctcgccatggtccaggcg 294 ||| ||||||| | || ||||| ||||||||||||| |||||| |||| |||||| Sbjct: 158855 tacaaccgcctgaggaaggcggagggcctggcgcgcccggcgctcgcgctggtgcaggcg 158914 Query: 295 cagcccgagcgcgtcgagcctggcccggcg 324 | || |||| || |||| | ||||||||| Sbjct: 158915 cggcgtgagctcgccgaggcgggcccggcg 158944
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 210 bits (106), Expect = 3e-51 Identities = 184/210 (87%) Strand = Plus / Plus Query: 115 ctgattccggggttgccggaggaggtggcgagggagtgcctcatacgggtggggttcgac 174 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 50398 ctgattccggggttgccggaggaggtggcgagggagtgcctcatccgggtggggttcgac 50457 Query: 175 cagctgccggcggtgcgccgcatctcgcggcagtggaaggaggaggtcgagtcgccgggc 234 ||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 50458 cagctgccggcggtgcgccgcatctcgcgccagtggaaggcggaggtggagtcgccggcg 50517 Query: 235 tacggccgcctgcgccgcgccgaggggctggcgcgcccggtgctcgccatggtccaggcg 294 ||| ||||||| | || ||||| ||||||||||||| |||||| |||| |||||| Sbjct: 50518 tacaaccgcctgaggaaggcggagggcctggcgcgcccggcgctcgcgctggtgcaggcg 50577 Query: 295 cagcccgagcgcgtcgagcctggcccggcg 324 | || |||| || |||| | ||||||||| Sbjct: 50578 cggcgtgagctcgccgaggcgggcccggcg 50607
>dbj|AK110986.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-D04, full insert sequence Length = 1650 Score = 210 bits (106), Expect = 3e-51 Identities = 184/210 (87%) Strand = Plus / Minus Query: 115 ctgattccggggttgccggaggaggtggcgagggagtgcctcatacgggtggggttcgac 174 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1270 ctgattccggggttgccggaggaggtggcgagggagtgcctcatccgggtggggttcgac 1211 Query: 175 cagctgccggcggtgcgccgcatctcgcggcagtggaaggaggaggtcgagtcgccgggc 234 ||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 1210 cagctgccggcggtgcgccgcatctcgcgccagtggaaggcggaggtggagtcgccggcg 1151 Query: 235 tacggccgcctgcgccgcgccgaggggctggcgcgcccggtgctcgccatggtccaggcg 294 ||| ||||||| | || ||||| ||||||||||||| |||||| |||| |||||| Sbjct: 1150 tacaaccgcctgaggaaggcggagggcctggcgcgcccggcgctcgcgctggtgcaggcg 1091 Query: 295 cagcccgagcgcgtcgagcctggcccggcg 324 | || |||| || |||| | ||||||||| Sbjct: 1090 cggcgtgagctcgccgaggcgggcccggcg 1061
>dbj|AK072246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001I15, full insert sequence Length = 1403 Score = 210 bits (106), Expect = 3e-51 Identities = 184/210 (87%) Strand = Plus / Plus Query: 115 ctgattccggggttgccggaggaggtggcgagggagtgcctcatacgggtggggttcgac 174 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 133 ctgattccggggttgccggaggaggtggcgagggagtgcctcatccgggtggggttcgac 192 Query: 175 cagctgccggcggtgcgccgcatctcgcggcagtggaaggaggaggtcgagtcgccgggc 234 ||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 193 cagctgccggcggtgcgccgcatctcgcgccagtggaaggcggaggtggagtcgccggcg 252 Query: 235 tacggccgcctgcgccgcgccgaggggctggcgcgcccggtgctcgccatggtccaggcg 294 ||| ||||||| | || ||||| ||||||||||||| |||||| |||| |||||| Sbjct: 253 tacaaccgcctgaggaaggcggagggcctggcgcgcccggcgctcgcgctggtgcaggcg 312 Query: 295 cagcccgagcgcgtcgagcctggcccggcg 324 | || |||| || |||| | ||||||||| Sbjct: 313 cggcgtgagctcgccgaggcgggcccggcg 342
>dbj|AK065435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022O04, full insert sequence Length = 1455 Score = 210 bits (106), Expect = 3e-51 Identities = 184/210 (87%) Strand = Plus / Plus Query: 115 ctgattccggggttgccggaggaggtggcgagggagtgcctcatacgggtggggttcgac 174 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 132 ctgattccggggttgccggaggaggtggcgagggagtgcctcatccgggtggggttcgac 191 Query: 175 cagctgccggcggtgcgccgcatctcgcggcagtggaaggaggaggtcgagtcgccgggc 234 ||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| Sbjct: 192 cagctgccggcggtgcgccgcatctcgcgccagtggaaggcggaggtggagtcgccggcg 251 Query: 235 tacggccgcctgcgccgcgccgaggggctggcgcgcccggtgctcgccatggtccaggcg 294 ||| ||||||| | || ||||| ||||||||||||| |||||| |||| |||||| Sbjct: 252 tacaaccgcctgaggaaggcggagggcctggcgcgcccggcgctcgcgctggtgcaggcg 311 Query: 295 cagcccgagcgcgtcgagcctggcccggcg 324 | || |||| || |||| | ||||||||| Sbjct: 312 cggcgtgagctcgccgaggcgggcccggcg 341
>gb|AY596555.1| Saccharum officinarum clone SCCCCL2001B07, complete sequence Length = 1515 Score = 192 bits (97), Expect = 6e-46 Identities = 172/197 (87%) Strand = Plus / Minus Query: 103 gcaatggccgacctgattccggggttgccggaggaggtggcgagggagtgcctcatacgg 162 ||||||| ||| |||| || ||||||||||||||||||||||||||||||||| | || Sbjct: 1375 gcaatgggcgagttgatccctgggttgccggaggaggtggcgagggagtgcctcgtccga 1316 Query: 163 gtggggttcgaccagctgccggcggtgcgccgcatctcgcggcagtggaaggaggaggtc 222 ||||| |||||||||||||||| ||| |||||||||||||| ||||||||| ||||| Sbjct: 1315 gtgggcttcgaccagctgccggtggtccgccgcatctcgcgccagtggaagtccgaggtg 1256 Query: 223 gagtcgccgggctacggccgcctgcgccgcgccgaggggctggcgcgcccggtgctcgcc 282 |||||||||| |||| ||| | |||||| || |||||||||||||||||||||||||| Sbjct: 1255 gagtcgccggactaccaccgacagcgccgggcggaggggctggcgcgcccggtgctcgcg 1196 Query: 283 atggtccaggcgcagcc 299 |||||||||||||||| Sbjct: 1195 ctggtccaggcgcagcc 1179 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 358 ggccccgcgaacaactacaggacggtgctgctggacccggtggaggggcggtgggccccg 417 |||||||||||| ||| ||| |||| ||||||||||||||||||| |||||||| ||| Sbjct: 1108 ggccccgcgaactcgtaccggatggtgttgctggacccggtggagggacggtgggcgccg 1049 Query: 418 ctgcc 422 ||||| Sbjct: 1048 ctgcc 1044
>ref|XM_464578.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1146 Score = 73.8 bits (37), Expect = 4e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 115 ctgattccggggttgccggaggaggtggcgagggagtgcctcatacgggtggggttcgac 174 |||||||||||| | |||||||| ||||| |||| ||||| | || ||||| |||||| Sbjct: 16 ctgattccggggctaccggaggaagtggcccgggaatgcctgctgcgcgtgggattcgac 75 Query: 175 cagctgccggcggtgcgccgcatctcgcggcagtggaaggaggaggtcgagtcgccg 231 ||||||||| ||| | | ||| ||||||| |||||||| |||||||||||||||| Sbjct: 76 cagctgccgtcggcgaggagcacgtcgcggcggtggaaggcggaggtcgagtcgccg 132
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 73.8 bits (37), Expect = 4e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 115 ctgattccggggttgccggaggaggtggcgagggagtgcctcatacgggtggggttcgac 174 |||||||||||| | |||||||| ||||| |||| ||||| | || ||||| |||||| Sbjct: 6094755 ctgattccggggctaccggaggaagtggcccgggaatgcctgctgcgcgtgggattcgac 6094696 Query: 175 cagctgccggcggtgcgccgcatctcgcggcagtggaaggaggaggtcgagtcgccg 231 ||||||||| ||| | | ||| ||||||| |||||||| |||||||||||||||| Sbjct: 6094695 cagctgccgtcggcgaggagcacgtcgcggcggtggaaggcggaggtcgagtcgccg 6094639
>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_A02 Length = 175153 Score = 73.8 bits (37), Expect = 4e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 115 ctgattccggggttgccggaggaggtggcgagggagtgcctcatacgggtggggttcgac 174 |||||||||||| | |||||||| ||||| |||| ||||| | || ||||| |||||| Sbjct: 60237 ctgattccggggctaccggaggaagtggcccgggaatgcctgctgcgcgtgggattcgac 60178 Query: 175 cagctgccggcggtgcgccgcatctcgcggcagtggaaggaggaggtcgagtcgccg 231 ||||||||| ||| | | ||| ||||||| |||||||| |||||||||||||||| Sbjct: 60177 cagctgccgtcggcgaggagcacgtcgcggcggtggaaggcggaggtcgagtcgccg 60121
>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F05 Length = 147472 Score = 73.8 bits (37), Expect = 4e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 115 ctgattccggggttgccggaggaggtggcgagggagtgcctcatacgggtggggttcgac 174 |||||||||||| | |||||||| ||||| |||| ||||| | || ||||| |||||| Sbjct: 115594 ctgattccggggctaccggaggaagtggcccgggaatgcctgctgcgcgtgggattcgac 115535 Query: 175 cagctgccggcggtgcgccgcatctcgcggcagtggaaggaggaggtcgagtcgccg 231 ||||||||| ||| | | ||| ||||||| |||||||| |||||||||||||||| Sbjct: 115534 cagctgccgtcggcgaggagcacgtcgcggcggtggaaggcggaggtcgagtcgccg 115478
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 241 cgcctgcgccgcgccgaggggc 262 |||||||||||||||||||||| Sbjct: 1960888 cgcctgcgccgcgccgaggggc 1960909
>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940135D9, complete sequence Length = 93659 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 291 ggcgcagcccgagcgcgtcgag 312 |||||||||||||||||||||| Sbjct: 48815 ggcgcagcccgagcgcgtcgag 48794
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 289 caggcgcagcccgagcgcgtcgagcc 314 |||||||||||||||||| ||||||| Sbjct: 434500 caggcgcagcccgagcgcatcgagcc 434525
>gb|AC102376.14| Mus musculus chromosome 18, clone RP23-314H11, complete sequence Length = 190153 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 60 cttcacttcaagttcattgatg 81 |||||||||||||||||||||| Sbjct: 39738 cttcacttcaagttcattgatg 39717
>gb|AC132464.3| Mus musculus BAC clone RP23-53K19 from chromosome 18, complete sequence Length = 175801 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 cttcacttcaagttcattgatg 81 |||||||||||||||||||||| Sbjct: 244 cttcacttcaagttcattgatg 265
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 177 gctgccggcggtgcgccgcatc 198 |||||||||||||||||||||| Sbjct: 1676743 gctgccggcggtgcgccgcatc 1676722
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cgcagcccgagcgcgtcgagc 313 ||||||||||||||||||||| Sbjct: 861043 cgcagcccgagcgcgtcgagc 861063
>emb|AL359076.16| Human DNA sequence from clone RP11-264I13 on chromosome 9 Contains the 5' end of the SMARCA2 gene for SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily a member 2 (SNF2LA), a novel gene and two CpG islands, complete sequence Length = 138859 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 gcgccgaggggctggcgcgcc 271 ||||||||||||||||||||| Sbjct: 9367 gcgccgaggggctggcgcgcc 9347
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cgcagcccgagcgcgtcgagc 313 ||||||||||||||||||||| Sbjct: 2179720 cgcagcccgagcgcgtcgagc 2179740
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 232 ggctacggccgcctgcgccgcgccg 256 ||||||||||||| ||||||||||| Sbjct: 270170 ggctacggccgccagcgccgcgccg 270194
>gb|AE009818.1|AE009818 Pyrobaculum aerophilum strain IM2 section 73 of 201 of the complete genome Length = 9108 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 cggaggaggtggcgagggagt 151 ||||||||||||||||||||| Sbjct: 162 cggaggaggtggcgagggagt 182
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cgcagcccgagcgcgtcgagc 313 ||||||||||||||||||||| Sbjct: 1753216 cgcagcccgagcgcgtcgagc 1753236
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 254 ccgaggggctggcgcgcccggtgctcgcc 282 ||||||||||||||||| |||||||||| Sbjct: 3421774 ccgaggggctggcgcgctgggtgctcgcc 3421746 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ccgcgccgaggggctggcgc 268 |||||||||||||||||||| Sbjct: 2068430 ccgcgccgaggggctggcgc 2068411 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 cgccgcgccgaggggctggcgcgc 270 ||||||||||||| |||||||||| Sbjct: 1280669 cgccgcgccgaggcgctggcgcgc 1280692
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 237 cggccgcctgcgccgcgccgaggggctgg 265 ||||||||| ||||||||||||| ||||| Sbjct: 1545488 cggccgcctccgccgcgccgaggtgctgg 1545460
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 cgcagcccgagcgcgtcgagc 313 ||||||||||||||||||||| Sbjct: 894618 cgcagcccgagcgcgtcgagc 894598
>gb|AC104285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035J08, complete sequence Length = 117555 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ttgccggaggaggtggcgag 146 |||||||||||||||||||| Sbjct: 68231 ttgccggaggaggtggcgag 68250
>gb|AY674509.1| Erythroxylum coca maturase (matR) gene, partial cds; mitochondrial Length = 1721 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gcggcagtggaaggaggagg 220 |||||||||||||||||||| Sbjct: 1479 gcggcagtggaaggaggagg 1498
>ref|XM_587494.2| PREDICTED: Bos taurus similar to Zinc finger X-linked protein ZXDB (LOC510362), mRNA Length = 2822 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 ggtgctgctggacccggtgg 400 |||||||||||||||||||| Sbjct: 432 ggtgctgctggacccggtgg 451
>ref|XM_425146.1| PREDICTED: Gallus gallus similar to c-sea (LOC427573), mRNA Length = 3375 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tgctgctggacccggtggag 402 |||||||||||||||||||| Sbjct: 350 tgctgctggacccggtggag 369
>ref|XM_549032.2| PREDICTED: Canis familiaris similar to Zinc finger X-linked protein ZXDB (LOC491912), mRNA Length = 2941 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 ggtgctgctggacccggtgg 400 |||||||||||||||||||| Sbjct: 474 ggtgctgctggacccggtgg 493
>gb|BC012531.1| Homo sapiens asparagine-linked glycosylation 5 homolog (S. cerevisiae, dolichyl-phosphate beta-glucosyltransferase), mRNA (cDNA clone MGC:13316 IMAGE:4273297), complete cds Length = 1106 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 gggctacggccgcctgcgccgcgccgag 258 ||||| |||||||| ||||||||||||| Sbjct: 77 gggctgcggccgccagcgccgcgccgag 50
>ref|NM_013338.3| Homo sapiens asparagine-linked glycosylation 5 homolog (S. cerevisiae, dolichyl-phosphate beta-glucosyltransferase) (ALG5), mRNA Length = 1145 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 gggctacggccgcctgcgccgcgccgag 258 ||||| |||||||| ||||||||||||| Sbjct: 98 gggctgcggccgccagcgccgcgccgag 71
>emb|AL391056.25| Human DNA sequence from clone RP11-492E3 on chromosome 9 Contains the 3' end of a novel gene (FLJ35367, FLJ14115), a novel gene (FLJ20378), the 5' end of the gene for AD-003 protein (AD-003), the 3' end of a novel gene (FLJ35803), a novel gene and six CpG islands, complete sequence Length = 129462 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 acccggtggaggggcggtgg 411 |||||||||||||||||||| Sbjct: 122864 acccggtggaggggcggtgg 122883
>emb|AL353782.23| Human DNA sequence from clone RP11-207C11 on chromosome 9 Contains the 5' end of the GPR51 gene for G protein-coupled receptor 51 (HG20, GABBR2, GPRC3B, GABABR2), the 3' end of a novel gene (FLJ36928), a CDC10 cell division cycle 10 homolog (S. cerevisiae) (SEPT7) pseudogene and a CpG island, complete sequence Length = 165358 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 cgcacacagcagatcaagca 35 |||||||||||||||||||| Sbjct: 4445 cgcacacagcagatcaagca 4464
>emb|AL138706.9| Human DNA sequence from clone RP11-421P11 on chromosome 13 Contains the MADH9 gene for MAD (mothers against decapentaplegic homolog 9 (Drosophila), the gene for dolichyl-phosphate beta-glucosyltransferase (ALG5), the gene for Opa-interacting protein 2 (OIP2), the 3' end of the gene for transcription factor (p38 interacting protein) (P38IP)part of as novel gene, a RPL29 pseudogene, a MAP2K1IP1 pseudogene and a CpG island, complete sequence Length = 195032 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 gggctacggccgcctgcgccgcgccgag 258 ||||| |||||||| ||||||||||||| Sbjct: 156287 gggctgcggccgccagcgccgcgccgag 156314
>gb|AC158575.3| Mus musculus chromosome 7, clone RP23-275H16, complete sequence Length = 221489 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cttttcttgctcacttcact 66 |||||||||||||||||||| Sbjct: 41187 cttttcttgctcacttcact 41168
>emb|Y10074.1|DMLETH D.melanogaster l(2)tid, l(2)not & l(2)rot genes (strain apxo) Length = 12417 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 7982 cagctgccggcggtgcgccg 8001 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 2657 cagctgccggcggtgcgccg 2676
>emb|X98094.1|DMCH2RA D.melanogaster genomic sequence from right arm of chromosome 2 Length = 10289 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 5900 cagctgccggcggtgcgccg 5919
>emb|X95251.1|DMTIDT4M D.melanogaster l(2)tid gene (strain bIf, l(2)tid4 mutant) Length = 3940 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 1486 cagctgccggcggtgcgccg 1505
>emb|X95249.1|DMTIDT2M D.melanogaster l(2)tid gene (strain b IF, l(2)tid2 mutant) Length = 3917 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 1486 cagctgccggcggtgcgccg 1505
>emb|X95247.1|DMTIDB D.melanogaster l(2)tid gene (strain bIf) Length = 3940 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 1486 cagctgccggcggtgcgccg 1505
>emb|X95242.1|DMTIDA D.melanogaster l(2)tid gene (strain apxo) Length = 3935 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 1487 cagctgccggcggtgcgccg 1506
>emb|X95241.1|DMTNRO D.melanogaster l(2)tid, l(2)not, and l(2)rot genes (strain Oregon R) Length = 7047 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 2658 cagctgccggcggtgcgccg 2677
>emb|X77822.1|DMTID56 D.melanogaster gene encoding Tid(56) protein Length = 2539 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 707 cagctgccggcggtgcgccg 726
>gb|AY993941.1| Microbacterium arborescens strain SE 14 cosmid MAS10D5, complete sequence Length = 33203 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 cgcctgcgccgcgccgaggg 260 |||||||||||||||||||| Sbjct: 14055 cgcctgcgccgcgccgaggg 14074
>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1 Length = 347582 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 ttccggggttgccggaggaggtgg 142 |||||||||||| ||||||||||| Sbjct: 41575 ttccggggttgctggaggaggtgg 41552
>emb|X95246.1|DMROTB D.melanogaster l(2)rot gene (strain bIf) Length = 2818 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 2550 cagctgccggcggtgcgccg 2531
>emb|X95245.1|DMROTA D.melanogaster l(2)rot gene (strain apxo) Length = 2812 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 2544 cagctgccggcggtgcgccg 2525
>emb|X77821.1|DMROT57 D.melanogaster mRNA for Rot(57) protein Length = 2812 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 2544 cagctgccggcggtgcgccg 2525
>ref|NM_206210.1| Drosophila melanogaster lethal (2) tumorous imaginal discs CG5504-RB, transcript variant B (l(2)tid), mRNA Length = 2035 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 329 cagctgccggcggtgcgccg 348
>ref|NM_206209.1| Drosophila melanogaster lethal (2) tumorous imaginal discs CG5504-RC, transcript variant C (l(2)tid), mRNA Length = 2020 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 329 cagctgccggcggtgcgccg 348
>gb|AC084365.16| Homo sapiens 12 BAC RP11-632B21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188629 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 tcacttcacttcaagttcattgat 80 |||||||||||||| ||||||||| Sbjct: 110711 tcacttcacttcaatttcattgat 110688
>ref|NM_080193.3| Drosophila melanogaster lethal (2) tumorous imaginal discs CG5504-RA, transcript variant A (l(2)tid), mRNA Length = 2030 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 329 cagctgccggcggtgcgccg 348
>gb|AC103710.2| Homo sapiens chromosome 11, clone CTD-2379P15, complete sequence Length = 151970 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tcacttcacttcaagttcat 76 |||||||||||||||||||| Sbjct: 47598 tcacttcacttcaagttcat 47579
>gb|AC011711.8| Homo sapiens chromosome 11, clone RP11-309J20, complete sequence Length = 149542 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tcacttcacttcaagttcat 76 |||||||||||||||||||| Sbjct: 116842 tcacttcacttcaagttcat 116823
>gb|AC104340.10| Mus musculus chromosome 7, clone RP24-495M13, complete sequence Length = 170605 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cttttcttgctcacttcact 66 |||||||||||||||||||| Sbjct: 11534 cttttcttgctcacttcact 11553
>gb|AY069853.1| Drosophila melanogaster SD10289 full length cDNA Length = 1804 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 89 cagctgccggcggtgcgccg 108
>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence Length = 117931 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 actcgtcggcgtcggctgcc 351 |||||||||||||||||||| Sbjct: 78337 actcgtcggcgtcggctgcc 78318
>gb|AF161498.1|AF161498 Homo sapiens HSPC149 mRNA, complete cds Length = 1116 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 gggctacggccgcctgcgccgcgccgag 258 ||||| |||||||| ||||||||||||| Sbjct: 74 gggctgcggccgccagcgccgcgccgag 47
>gb|AC010842.5|AC010842 Drosophila melanogaster, chromosome 2R, region 59F5-59F8, BAC clone BACR02E09, complete sequence Length = 175118 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 50781 cagctgccggcggtgcgccg 50800
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ttgccggaggaggtggcgag 146 |||||||||||||||||||| Sbjct: 292711 ttgccggaggaggtggcgag 292730
>dbj|AB201477.1| Hyphomicrobium denitrificans moxF, moxJ, moxG, moxI, moxR, moxS, moxA, moxC genes for methanol dehydrogenase large subunit, possible unknown molecular chaperon or methanol dehydrogenase subunit, cytochrome cL, methanol dehydrogenase small subunit, hypothetical proteins, partial and complete cds Length = 7641 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 gcgcgtcgagcctggcccgg 322 |||||||||||||||||||| Sbjct: 4462 gcgcgtcgagcctggcccgg 4481
>gb|AE004631.1| Pseudomonas aeruginosa PAO1, section 192 of 529 of the complete genome Length = 10864 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tcgaccagctgccggcggtg 189 |||||||||||||||||||| Sbjct: 10440 tcgaccagctgccggcggtg 10421
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ggcgcagcccgagcgcgtcg 310 |||||||||||||||||||| Sbjct: 437563 ggcgcagcccgagcgcgtcg 437544
>ref|XM_565013.1| Anopheles gambiae str. PEST ENSANGP00000029239 (ENSANGG00000022823), partial mRNA Length = 2484 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 accagctgccggcggtgcgccgca 196 ||||||||||||||||||| |||| Sbjct: 1283 accagctgccggcggtgcggcgca 1306
>gb|AC002462.1|AC002462 Human BAC clone CTA-210I4, complete sequence Length = 100258 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 tcacttcacttcaagttcattgat 80 |||||||||||||| ||||||||| Sbjct: 13845 tcacttcacttcaatttcattgat 13822
>dbj|AK103444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129E14, full insert sequence Length = 1578 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ttgccggaggaggtggcgag 146 |||||||||||||||||||| Sbjct: 275 ttgccggaggaggtggcgag 256
>gb|AF102850.1|AF102850 Homo sapiens dolichyl-phosphate beta-glucosyltransferase (ALG5) mRNA, complete cds Length = 1245 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 gggctacggccgcctgcgccgcgccgag 258 ||||| |||||||| ||||||||||||| Sbjct: 133 gggctgcggccgccagcgccgcgccgag 106
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctgccggcggtgcgccg 194 |||||||||||||||||||| Sbjct: 228379 cagctgccggcggtgcgccg 228398
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ccgcctgcgccgcgccgagg 259 |||||||||||||||||||| Sbjct: 226834 ccgcctgcgccgcgccgagg 226815
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ccgcctgcgccgcgccgagg 259 |||||||||||||||||||| Sbjct: 2415355 ccgcctgcgccgcgccgagg 2415374
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 atggtccaggcgcagcccgagcgc 306 |||||||||||||| ||||||||| Sbjct: 3064903 atggtccaggcgcaccccgagcgc 3064880
>gb|AC147899.2| Xenopus tropicalis clone CH216-53A2, complete sequence Length = 158405 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 atgagcagctgctttgaggc 98 |||||||||||||||||||| Sbjct: 25402 atgagcagctgctttgaggc 25421
>gb|L12024.1|CHKCSEAX Gallus gallus protooncogene c-sea receptor, complete cds Length = 4567 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tgctgctggacccggtggag 402 |||||||||||||||||||| Sbjct: 350 tgctgctggacccggtggag 369
>gb|M74001.1|RCASAMPM Rhodobcater capsulatus S-adenosylmethionine-magnesium protoporphyrin methyltransferase (bchH) gene sequence Length = 3588 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 cggccgcctgcgccgcgccg 256 |||||||||||||||||||| Sbjct: 2488 cggccgcctgcgccgcgccg 2469 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,011,183 Number of Sequences: 3902068 Number of extensions: 3011183 Number of successful extensions: 69794 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67481 Number of HSP's gapped (non-prelim): 2309 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
