ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63c07 |
|---|---|
| Clone Library Name | barley_pub |
>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding| protein homolog 2) Length = 448 Score = 131 bits (329), Expect = 9e-31 Identities = 69/93 (74%), Positives = 72/93 (77%) Frame = +1 Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360 FEP AAPSRVGRKQRKQ+GPEAAARLP VAP MEEEFVA+QE Sbjct: 32 FEPSAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLLKLERVKDYLLMEEEFVAAQE 91 Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 459 RLRP+EDKTEEDRSKVDDLRGTPMSVGSLEEII Sbjct: 92 RLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEII 124
>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)| Length = 439 Score = 100 bits (248), Expect = 2e-21 Identities = 49/93 (52%), Positives = 65/93 (69%) Frame = +1 Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360 +EPP P+RVG+K+R+ +GP+AA +LP V P ME+EF+ +QE Sbjct: 24 YEPPI-PTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQE 82 Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 459 RL+P ++K EE+RSKVDDLRGTPMSVG+LEEII Sbjct: 83 RLKPQDEKNEEERSKVDDLRGTPMSVGNLEEII 115
>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 99.4 bits (246), Expect = 4e-21 Identities = 49/93 (52%), Positives = 66/93 (70%) Frame = +1 Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360 +EPP P+RVG+K++K +GP+AA++LP V P MEEEF+ +QE Sbjct: 25 YEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83 Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 459 +++P E+K EE+RSKVDDLRGTPMSVG+LEEII Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEII 116
>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 99.4 bits (246), Expect = 4e-21 Identities = 49/93 (52%), Positives = 66/93 (70%) Frame = +1 Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360 +EPP P+RVG+K++K +GP+AA++LP V P MEEEF+ +QE Sbjct: 25 YEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83 Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 459 +++P E+K EE+RSKVDDLRGTPMSVG+LEEII Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEII 116
>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 99.4 bits (246), Expect = 4e-21 Identities = 49/93 (52%), Positives = 66/93 (70%) Frame = +1 Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360 +EPP P+RVG+K++K +GP+AA++LP V P MEEEF+ +QE Sbjct: 25 YEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83 Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 459 +++P E+K EE+RSKVDDLRGTPMSVG+LEEII Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEII 116
>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 96.7 bits (239), Expect = 3e-20 Identities = 48/93 (51%), Positives = 65/93 (69%) Frame = +1 Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360 +EPP P+RVG+K++K +GP+AA++ P V P MEEEF+ +QE Sbjct: 25 YEPPV-PTRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83 Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 459 +++P E+K EE+RSKVDDLRGTPMSVG+LEEII Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEII 116
>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4| Length = 443 Score = 93.6 bits (231), Expect = 2e-19 Identities = 45/93 (48%), Positives = 64/93 (68%) Frame = +1 Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360 +E P PSR+G+K++ +GP+AA++LP V P ME+EF+ +QE Sbjct: 28 YEAPI-PSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQE 86 Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 459 RL+P E++ EE+R+KVD+LRGTPM+VGSLEEII Sbjct: 87 RLKPQEERQEEERAKVDELRGTPMAVGSLEEII 119
>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)| Length = 448 Score = 91.7 bits (226), Expect = 8e-19 Identities = 45/94 (47%), Positives = 66/94 (70%), Gaps = 1/94 (1%) Frame = +1 Query: 181 FEPPAAPSRVGRKQRK-QRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQ 357 +EPP P+R GR+++K Q GP+A+A+LP V P MEEE+V +Q Sbjct: 31 YEPPV-PTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQ 89 Query: 358 ERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 459 ERL+P +++T+E+R++VD++RGTPMSVG+LEEII Sbjct: 90 ERLKPQDERTQEERNRVDEIRGTPMSVGTLEEII 123
>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding| homolog 5) Length = 437 Score = 70.5 bits (171), Expect = 2e-12 Identities = 37/93 (39%), Positives = 56/93 (60%) Frame = +1 Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360 +EPP S+ GRK+RK GP A +LP + P +EEEFV++ E Sbjct: 23 YEPPVQ-SKFGRKKRKG-GPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSE 80 Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 459 L+P E K EE++ +++++RG P+S+G+LEEII Sbjct: 81 ILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEII 113
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +3 Query: 285 PPPPSQAGPRQGLPSHGGGVRREPGAAA 368 PPPP+ GPR G G PGA A Sbjct: 2076 PPPPADGGPRGAGDPGGAGASSGPGAPA 2103
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +3 Query: 285 PPPPSQAGPRQGLPSHGGGVRREP 356 PPPP GP +GL GG R P Sbjct: 97 PPPPRSRGPPRGLRGGSGGTRGPP 120
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +3 Query: 285 PPPPSQAGPRQGLPSHGGGVRREP 356 PPPP GP +GL GG R P Sbjct: 97 PPPPRSRGPPRGLRGGSGGTRGPP 120
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 25.8 bits (55), Expect(2) = 4.8 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPP 264 F P P+R GRK ++QR E A P Sbjct: 410 FGRPGGPARRGRKSKRQRRQEYEAMQAP 437 Score = 21.9 bits (45), Expect(2) = 4.8 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +3 Query: 75 GGDGAGFSGRHG 110 GG G GF+GR G Sbjct: 370 GGGGGGFAGRPG 381
>GCP60_RAT (Q7TNY6) Golgi resident protein GCP60 (Acyl-CoA-binding| domain-containing protein 3) (Golgi phosphoprotein 1) (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1) (DMT1-associated protein) (DAP) Length = 525 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +3 Query: 276 LQVPPPPSQAGPRQGLPSHGGGVRREPGAAA 368 LQ PP + PR GL S G +REPG AA Sbjct: 33 LQTPP---SSPPRDGLGSGTAGQQREPGEAA 60
>FRAT2_MOUSE (Q8K025) GSK-3-binding protein FRAT2 (Frat-2)| Length = 231 Score = 28.5 bits (62), Expect = 8.6 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -1 Query: 124 DRPACPCRPENPAPSPP 74 DRPA PC P P+PP Sbjct: 57 DRPASPCAAPGPPPAPP 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.308 0.129 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,596,823 Number of Sequences: 219361 Number of extensions: 559107 Number of successful extensions: 3007 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2582 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2990 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits)
