ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63c01 |
|---|---|
| Clone Library Name | barley_pub |
>ABHD4_MOUSE (Q8VD66) Abhydrolase domain-containing protein 4| Length = 342 Score = 35.8 bits (81), Expect = 0.052 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = +3 Query: 252 RPSVVLVHGFAAEGIVTWQFQAGVLARHYDVYIPDLLYFGGSTSPSTDRSPGFQAECLVA 431 R +V+VHGF G+ W L+ ++ DLL FG S+ P+ R P + VA Sbjct: 68 RTPLVMVHGFGG-GVGLWILNMDSLSARRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVA 126 Query: 432 APRSW 446 + +W Sbjct: 127 SIETW 131
>BIOH_VIBF1 (Q5E8N3) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis| protein bioH) Length = 257 Score = 35.4 bits (80), Expect = 0.067 Identities = 20/64 (31%), Positives = 30/64 (46%) Frame = +3 Query: 261 VVLVHGFAAEGIVTWQFQAGVLARHYDVYIPDLLYFGGSTSPSTDRSPGFQAECLVAAPR 440 +VL+HG+ G V WQ + L++HY V+ DL +G S + L AP+ Sbjct: 16 LVLIHGWGMNGAV-WQTTSEKLSQHYRVHTVDLSGYGHSAELGCADFDEMVKQVLAQAPK 74 Query: 441 SWGW 452 W Sbjct: 75 KAAW 78
>Y2734_MYCBO (P0A573) Hypothetical protein Mb2734| Length = 341 Score = 35.0 bits (79), Expect = 0.088 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +3 Query: 255 PSVVLVHGFAAEGIVTWQFQAGVLARHYDVYIPDLLYFGGSTSPSTDRS 401 P+++L+HG + TW LA+ + V PDLL G S P D S Sbjct: 38 PAILLIHGIG-DNSTTWNGVHAKLAQRFTVIAPDLLGHGQSDKPRADYS 85
>Y2715_MYCTU (P0A572) Hypothetical protein Rv2715/MT2788| Length = 341 Score = 35.0 bits (79), Expect = 0.088 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +3 Query: 255 PSVVLVHGFAAEGIVTWQFQAGVLARHYDVYIPDLLYFGGSTSPSTDRS 401 P+++L+HG + TW LA+ + V PDLL G S P D S Sbjct: 38 PAILLIHGIG-DNSTTWNGVHAKLAQRFTVIAPDLLGHGQSDKPRADYS 85
>ABHD4_HUMAN (Q8TB40) Abhydrolase domain-containing protein 4| Length = 342 Score = 34.3 bits (77), Expect = 0.15 Identities = 20/65 (30%), Positives = 31/65 (47%) Frame = +3 Query: 252 RPSVVLVHGFAAEGIVTWQFQAGVLARHYDVYIPDLLYFGGSTSPSTDRSPGFQAECLVA 431 R +V+VHGF G+ W L+ ++ DLL FG S+ P+ R P + V Sbjct: 68 RTPLVMVHGFGG-GVGLWILNMDSLSARRTLHTFDLLGFGRSSRPAFPRDPEGAEDEFVT 126 Query: 432 APRSW 446 + +W Sbjct: 127 SIETW 131
>ABHD4_BOVIN (Q5EA59) Abhydrolase domain-containing protein 4| Length = 342 Score = 34.3 bits (77), Expect = 0.15 Identities = 20/65 (30%), Positives = 31/65 (47%) Frame = +3 Query: 252 RPSVVLVHGFAAEGIVTWQFQAGVLARHYDVYIPDLLYFGGSTSPSTDRSPGFQAECLVA 431 R +V+VHGF G+ W L+ ++ DLL FG S+ P+ R P + V Sbjct: 68 RTPLVMVHGFGG-GVGLWILNMDSLSTRRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVT 126 Query: 432 APRSW 446 + +W Sbjct: 127 SIETW 131
>ATRIP_HUMAN (Q8WXE1) ATR-interacting protein (ATM and Rad3-related-interacting| protein) Length = 791 Score = 30.4 bits (67), Expect = 2.2 Identities = 17/39 (43%), Positives = 19/39 (48%) Frame = -2 Query: 360 AGPGCTRRSASPAHQPGTAT*QCLRPRSRARGRQKAARP 244 + PG RRS PA +PG P RARG AA P Sbjct: 5 SAPGSKRRSEPPAPRPGPPPGTGHPPSKRARGFSAAAAP 43
>TODF_PSEPU (P23133) 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase (EC 3.1.1.-)| (HOHH) Length = 276 Score = 28.9 bits (63), Expect = 6.3 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = +3 Query: 261 VVLVHGFAAEGIVTWQFQAGV---LARHYDVYIPDLLYFGGSTSP 386 VVLVHG + G+ W V L+RH V PD++ FG + P Sbjct: 30 VVLVHG-SGPGVTAWANWRTVMPELSRHRRVIAPDMVGFGFTQRP 73
>PRXC_STRAU (O31168) Non-heme chloroperoxidase (EC 1.11.1.10) (Chloride| peroxidase) (CPO-T) (Chloroperoxidase T) Length = 278 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +3 Query: 261 VVLVHGFAAEGIVTWQFQ-AGVLARHYDVYIPDLLYFGGSTSPST 392 VVL+HGF G +W+ Q A +L Y V D FG S+ P+T Sbjct: 27 VVLIHGFPLSG-HSWERQSAALLDAGYRVITYDRRGFGQSSQPTT 70
>NFRKB_HUMAN (Q6P4R8) Nuclear factor related to kappa-B-binding protein| (DNA-binding protein R kappa-B) Length = 1299 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Frame = +1 Query: 64 PGFGST-LWTWMAPARCSPSGCPRTSSPGTS 153 PG G T L PA SP P TSSPGTS Sbjct: 870 PGPGQTGLTVTSLPATASPVSKPATSSPGTS 900
>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22| Length = 954 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = -2 Query: 372 RRSRAGPGCTRRSASPAHQPGTAT*QCLRPRSRARGR 262 RR R G G RRS + PG+ + RPRSR+R R Sbjct: 801 RRRRRGVGSRRRSLT--RSPGSRSRPRSRPRSRSRSR 835
>BPOA2_STRAU (P29715) Non-haem bromoperoxidase BPO-A2 (EC 1.11.1.-) (Bromide| peroxidase) (BPO2) Length = 277 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +3 Query: 261 VVLVHGFAAEGIVTWQFQ-AGVLARHYDVYIPDLLYFGGSTSPST 392 VVL+HGF G +W+ Q A +L Y V D FG S+ P+T Sbjct: 26 VVLIHGFPLSG-HSWERQSAALLDAGYRVITYDRRGFGQSSQPTT 69
>RR14_ASTLO (P24354) Plastid 30S ribosomal protein S14| Length = 100 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -3 Query: 212 GGWRLIGLRRRFGRDLTHGGLVPG 141 G +R GL R RD+ H GL+PG Sbjct: 71 GYYRFFGLSRHIFRDMAHYGLLPG 94
>CBPE_BOVIN (P04836) Carboxypeptidase E (EC 3.4.17.10) (CPE) (Carboxypeptidase| H) (CPH) (Enkephalin convertase) (Prohormone-processing carboxypeptidase) Length = 434 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = -3 Query: 143 GELVLGHPEGEHRAGAIHVHSVLPKPGPLDQEVQQRLLRLHQVHHP 6 G+LV +P E R+G+ H +S P D ++ Q L R + +P Sbjct: 208 GDLVANYPYDETRSGSAHEYSSCP-----DDDIFQSLARAYSSFNP 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,323,126 Number of Sequences: 219361 Number of extensions: 1267462 Number of successful extensions: 4102 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3966 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4101 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
