| Clone Name | bast63b06 |
|---|---|
| Clone Library Name | barley_pub |
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 37.0 bits (84), Expect = 0.029 Identities = 32/90 (35%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Frame = +3 Query: 234 AAKRDAPAQRSETQPPGSFFSSAPLPRRARVASSPTPHRITRSLPPSWQASASALWP--- 404 AA P S++ PP S FSSA P AS P H S PPS S++ P Sbjct: 593 AAATSTPVSSSQSAPPMSPFSSASKP----AASGPLSHPTPLSAPPSSVPLKSSVLPSPS 648 Query: 405 GRCRSSRRHIRPVAVAPSVSIGPCSAWPHS 494 GR P V S I P +A P S Sbjct: 649 GRSAQGSSSPVPSMVQKSPRITPPAAKPGS 678 Score = 28.9 bits (63), Expect = 7.9 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Frame = +3 Query: 234 AAKRDAPAQRSETQPPGSFFSSAPLPRRARVASSPTPHRITRSLPPSWQASASALWPGR- 410 AA+ P+ + +QP FSS S P+ I S PPS SAS PG Sbjct: 1238 AAQGATPSTKESSQPDA--FSSGG-------GSKPSYEAIPESSPPSGITSASNTTPGEP 1288 Query: 411 CRSSRRHIRPVAVAPSVS 464 SS R + P A S + Sbjct: 1289 AASSSRPVAPSGTALSTT 1306
>FOG1_XENLA (Q9I9K0) Zinc finger protein FOG (Friend of GATA) (xFOG) (Fragment)| Length = 1061 Score = 35.4 bits (80), Expect = 0.085 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 6/86 (6%) Frame = +3 Query: 234 AAKRDAPAQRSETQPPGSFFSSAPLPRRARVASSPTPHRI--TRSLPPS----WQASASA 395 A++ D P +R E PG +++ P PR + H + T S PPS + A A Sbjct: 653 ASRHDPPLRRREVNKPGPPYTTQPTPRTRKRRKLYEIHGVAPTESTPPSPHTLGRVEAMA 712 Query: 396 LWPGRCRSSRRHIRPVAVAPSVSIGP 473 L PG + P V PS S P Sbjct: 713 LMPG--------LIPAPVMPSPSSSP 730
>CCG8_HUMAN (Q8WXS5) Voltage-dependent calcium channel gamma-8 subunit| (Neuronal voltage-gated calcium channel gamma-8 subunit) Length = 425 Score = 34.7 bits (78), Expect = 0.14 Identities = 15/21 (71%), Positives = 15/21 (71%) Frame = -2 Query: 337 GDDATRARRGSGAEEKKDPGG 275 GDD T R G GA EKKDPGG Sbjct: 61 GDDGTPHRGGGGASEKKDPGG 81
>CT075_HUMAN (Q8WUT4) Protein C20orf75 precursor| Length = 740 Score = 33.5 bits (75), Expect = 0.32 Identities = 23/72 (31%), Positives = 30/72 (41%) Frame = +3 Query: 255 AQRSETQPPGSFFSSAPLPRRARVASSPTPHRITRSLPPSWQASASALWPGRCRSSRRHI 434 A + TQ G L AS+P ++ P SW S S+ PG+ R H Sbjct: 450 ASTTRTQHRGEHAPELVLEPDISAASTPLASKLLGPFPTSWDRSISSPQPGQ----RTHA 505 Query: 435 RPVAVAPSVSIG 470 P A PS+S G Sbjct: 506 TPQAPNPSLSEG 517 Score = 28.9 bits (63), Expect = 7.9 Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 6/88 (6%) Frame = +3 Query: 249 APAQRSETQPPGSFFSSAPLPRRARVASSPTPHRITRSLPPSWQASASALWPGRCRSSRR 428 APA S G F +S L + V S + S PP + S A S+ Sbjct: 340 APAAGSS----GPFSASLSLSQLPGVCQSDQSTTLGASHPPCFNRSTYAQGTTVAPSAAP 395 Query: 429 HIRP------VAVAPSVSIGPCSAWPHS 494 RP V+ AP+V +AWPHS Sbjct: 396 ATRPAGDQQSVSKAPNVGSRTIAAWPHS 423
>CCG8_MOUSE (Q8VHW2) Voltage-dependent calcium channel gamma-8 subunit| (Neuronal voltage-gated calcium channel gamma-8 subunit) Length = 423 Score = 32.7 bits (73), Expect = 0.55 Identities = 14/21 (66%), Positives = 15/21 (71%) Frame = -2 Query: 337 GDDATRARRGSGAEEKKDPGG 275 GDD R GSG+ EKKDPGG Sbjct: 60 GDDGPPHRGGSGSSEKKDPGG 80
>CCG8_RAT (Q8VHW5) Voltage-dependent calcium channel gamma-8 subunit| (Neuronal voltage-gated calcium channel gamma-8 subunit) Length = 421 Score = 32.7 bits (73), Expect = 0.55 Identities = 14/21 (66%), Positives = 15/21 (71%) Frame = -2 Query: 337 GDDATRARRGSGAEEKKDPGG 275 GDD R GSG+ EKKDPGG Sbjct: 60 GDDGPPHRGGSGSSEKKDPGG 80
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 32.0 bits (71), Expect = 0.94 Identities = 19/52 (36%), Positives = 24/52 (46%) Frame = +3 Query: 252 PAQRSETQPPGSFFSSAPLPRRARVASSPTPHRITRSLPPSWQASASALWPG 407 PA + P GS S AP+P A VA+ P P + P A A+ PG Sbjct: 122 PAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPG 173
>PACC_YEAST (P33400) pH-response transcription factor pacC/RIM101 (pH-response| regulator protein RIM101) (Regulator of IME2 protein 1) Length = 625 Score = 32.0 bits (71), Expect = 0.94 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +3 Query: 321 RVASSPTPHRITRSLPPSWQASASALWPGRCRSSRRHIRPVAVAPSVSIGPCSAWP 488 R+A PT +T LPP +A ++ + + + H V APS S CS P Sbjct: 446 RLAKYPTGPSLTEHLPPLHSNTAGGVFNRQSQYAMPHYPSVRAAPSYSSSGCSILP 501
>ANLN_DROME (Q9V4P1) Actin-binding protein anillin (Actin-binding protein 8)| (ABP8) Length = 1239 Score = 31.6 bits (70), Expect = 1.2 Identities = 23/97 (23%), Positives = 37/97 (38%) Frame = +3 Query: 138 DETXXXXXXXXXXXXXXMEDRDRSR*FDAPWQAAKRDAPAQRSETQPPGSFFSSAPLPRR 317 D+ ++D DR R D + + + + + QP S ++ P Sbjct: 451 DKVAALVANAQSSAETRIKDIDRQRQEDMQIISNRFNKQKELFDNQPSDSSVAAQARP-- 508 Query: 318 ARVASSPTPHRITRSLPPSWQASASALWPGRCRSSRR 428 +P P R+ R +PP +AL PG S RR Sbjct: 509 ----PAPAPSRVVRPMPPPPPPPIAALSPGLASSKRR 541
>PDXA2_BRAJA (Q89MT9) 4-hydroxythreonine-4-phosphate dehydrogenase 2 (EC| 1.1.1.262) (4-(phosphohydroxy)-L-threonine dehydrogenase 2) Length = 345 Score = 30.8 bits (68), Expect = 2.1 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +2 Query: 185 SDGGPRSITLVRCSVASGQEGRSGAAVRNPAARILLF 295 + P ++ +R +VA + GR+GA V NP A+ +L+ Sbjct: 103 ASSAPAALASIRQAVADVRAGRAGAVVTNPIAKSVLY 139
>CHSP1_RAT (Q9WU49) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 147 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 300 APLPRRARVASSPTPHRITRSLPPSWQASASALWPGRCR 416 +P P R V SP P R TR+ + +AS ++ G C+ Sbjct: 30 SPSPLRGNVVPSPLPTRRTRTFSATVRASQGPVYKGVCK 68
>CHSP1_HUMAN (Q9Y2V2) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 147 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 300 APLPRRARVASSPTPHRITRSLPPSWQASASALWPGRCR 416 +P P R V SP P R TR+ + +AS ++ G C+ Sbjct: 30 SPSPLRGNVVPSPLPTRRTRTFSATVRASQGPVYKGVCK 68
>CHSP1_MOUSE (Q9CR86) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 148 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 300 APLPRRARVASSPTPHRITRSLPPSWQASASALWPGRCR 416 +P P R V SP P R TR+ + +AS ++ G C+ Sbjct: 31 SPSPLRGNVVPSPLPTRRTRTFSATVRASQGPVYKGVCK 69
>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)| Length = 1992 Score = 29.6 bits (65), Expect = 4.7 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Frame = +3 Query: 234 AAKRDAPAQRSETQPPGSFFSSAP---LPRRARVASSPTPHRITRSLPPSWQASASAL-W 401 ++ A A S T PPG+ RR+R ASSP+P R +R S +S W Sbjct: 203 SSSSSAVASASSTVPPGARVKQGKDQNKARRSRSASSPSPRRSSREKEQSKTGGSSKFDW 262 Query: 402 PGR 410 R Sbjct: 263 AAR 265
>POLN_SAGV (Q9JGL0) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2466 Score = 29.3 bits (64), Expect = 6.1 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 7/74 (9%) Frame = +3 Query: 270 TQPPGSFFSSAPLPRRARVASSPTPH-------RITRSLPPSWQASASALWPGRCRSSRR 428 T+PP + P PR+ R S+ PH R+ LP W+ + G RR Sbjct: 1771 TEPPSEPEAPIPAPRKRRTTSTTPPHNPGDFVPRVPVELP--WEPEDLDIQFGDLEPRRR 1828 Query: 429 HIRPVAVAPSVSIG 470 + R V+ + G Sbjct: 1829 NTRDWDVSTGIQFG 1842
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.3 bits (64), Expect = 6.1 Identities = 21/67 (31%), Positives = 32/67 (47%) Frame = +3 Query: 222 APWQAAKRDAPAQRSETQPPGSFFSSAPLPRRARVASSPTPHRITRSLPPSWQASASALW 401 +P +R +P+ R + P +S +P P+R R AS P P + S P + S Sbjct: 574 SPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKR-RTASPPPPPKRRASPSPQSKRRVSHSP 632 Query: 402 PGRCRSS 422 P + RSS Sbjct: 633 PPKQRSS 639
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.3 bits (64), Expect = 6.1 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = +3 Query: 252 PAQR--SETQPPGSFFSSAPLPRRARVASSPTP-HRITRSLPPSWQAS 386 P QR S + PP +S P P + R + SP P R++ S PP ++S Sbjct: 599 PIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSS 646 Score = 29.3 bits (64), Expect = 6.1 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +3 Query: 225 PWQAAKRDAPAQRSETQPPGSFFSSAPLPRRARVASSPTP--HRITRSLPPSWQASASAL 398 P +R +P+ R + P +S +P P+R R AS P P R + S PP + S S Sbjct: 582 PSPPPRRRSPSPRRYSPPIQRRYSPSPPPKR-RTASPPPPPKRRASPSPPPKRRVSHSP- 639 Query: 399 WPGRCRSS 422 P + RSS Sbjct: 640 -PPKQRSS 646
>LCMT2_MOUSE (Q8BYR1) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)| (p21WAF1/CIP1 promoter-interacting protein) Length = 686 Score = 29.3 bits (64), Expect = 6.1 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +1 Query: 238 PRGTLRRSGPKPSRPDPSFLPHRCRAAHGW 327 PRG RR+G S D S L R AAHG+ Sbjct: 3 PRGRQRRAGTVQSTNDSSSLSKRSLAAHGY 32
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 29.3 bits (64), Expect = 6.1 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = +3 Query: 252 PAQR--SETQPPGSFFSSAPLPRRARVASSPTP-HRITRSLPPSWQAS 386 P QR S + PP +S P P + R + SP P R++ S PP ++S Sbjct: 613 PIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSS 660 Score = 29.3 bits (64), Expect = 6.1 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +3 Query: 225 PWQAAKRDAPAQRSETQPPGSFFSSAPLPRRARVASSPTP--HRITRSLPPSWQASASAL 398 P +R +P+ R + P +S +P P+R R AS P P R + S PP + S S Sbjct: 596 PSPPPRRRSPSPRRYSPPIQRRYSPSPPPKR-RTASPPPPPKRRASPSPPPKRRVSHSP- 653 Query: 399 WPGRCRSS 422 P + RSS Sbjct: 654 -PPKQRSS 660
>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)| (Obscurin-MLCK) (Obscurin-RhoGEF) Length = 7968 Score = 28.9 bits (63), Expect = 7.9 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = +1 Query: 175 GRPQRWRTEIDHVSSMLRGKRPRGTLRRSGPKPSRPDPSFLPHRCRAAHGWHHPRPPTAS 354 G +R + ++H+S +L+G RP G L + G P R P R W R PT Sbjct: 7413 GLRERVKASVEHISRILKG-RPEG-LEKEG--PPRKKPGLASFRLSGLKSW--DRAPTFL 7466 Query: 355 RD 360 R+ Sbjct: 7467 RE 7468
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 28.9 bits (63), Expect = 7.9 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +3 Query: 234 AAKRDAPAQRSETQP--PGSFFSSAPLPRRARVASSPTPHRITR--SLPPSWQASASALW 401 AA+R A A+R P PG P PR A A +P T S P + A+AS Sbjct: 91 AAERPAAAERPAAAPAAPGPRPGPKPAPRPAPAAPAPAAPEFTAPPSAPAAPAAAASGPR 150 Query: 402 PG 407 PG Sbjct: 151 PG 152
>IF2_SYNEL (Q8DK04) Translation initiation factor IF-2| Length = 957 Score = 28.9 bits (63), Expect = 7.9 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%) Frame = +3 Query: 234 AAKRDAPAQRSETQPPGSFFSSAPLPRR-----ARVASSPTPHRITRSLPPSWQASASAL 398 AAK AP + E PP + P P R +VA++P P + + P + + +A Sbjct: 134 AAKPPAPPAKPEPTPPRPVPTLVPPPTRPTKKEEKVAATPPPRKELKEPPKKEKGAIAAA 193 Query: 399 WPG---RCRSSRRHIRPVAVAP 455 P R +R + P P Sbjct: 194 KPSSQDRIEIVQRAVPPAPAKP 215
>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)| (Ubiquitin thioesterase 51) (Ubiquitin-specific-processing protease 51) (Deubiquitinating enzyme 51) Length = 711 Score = 28.9 bits (63), Expect = 7.9 Identities = 21/62 (33%), Positives = 25/62 (40%) Frame = +3 Query: 243 RDAPAQRSETQPPGSFFSSAPLPRRARVASSPTPHRITRSLPPSWQASASALWPGRCRSS 422 R P RS +QP SAP P AR P P P +W+ S PG + Sbjct: 107 RPQPRARSRSQPG----LSAPPPPPARPPPPPPPPPPPAPRPRAWRGSRRRSRPGSRPQT 162 Query: 423 RR 428 RR Sbjct: 163 RR 164
>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (hCOP1) Length = 731 Score = 28.9 bits (63), Expect = 7.9 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Frame = +3 Query: 279 PGSFFSSAPLPRRARVASSPTPHRITRSLPPSWQASASALWPGRCRSSRRH------IRP 440 PGS +S+ + ++SSP+P PS SA+AL G + +RP Sbjct: 16 PGSSAASSVTSASSSLSSSPSP--------PSVAVSAAALVSGGVAQAAGSGGLGGPVRP 67 Query: 441 VAVAPSVS 464 V VAP+VS Sbjct: 68 VLVAPAVS 75
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 28.9 bits (63), Expect = 7.9 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = +3 Query: 225 PWQAAKRDAPAQRSETQPPGSFFSSAPLPRRARVASSPTPHRITRSLPP-SWQASASALW 401 PWQ ++ P P S SS PLP + ++ T T S+PP Q +A+A Sbjct: 499 PWQQQQQQPPPP---PPPSSSMASSTPLPWQQNTTTTTTSAG-TGSIPPWQQQQAAAAAS 554 Query: 402 PG 407 PG Sbjct: 555 PG 556
>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) Length = 639 Score = 28.9 bits (63), Expect = 7.9 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = +3 Query: 225 PWQAAKRDAPAQRSETQPPGSFFSSAPLPRRARVASSPTPHRITRSLPP-SWQASASALW 401 PWQ ++ P P S SS PLP + ++ T T S+PP Q +A+A Sbjct: 499 PWQQQQQQPPPP---PPPSSSMASSTPLPWQQNTTTTTTSAG-TGSIPPWQQQQAAAAAS 554 Query: 402 PG 407 PG Sbjct: 555 PG 556
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.9 bits (63), Expect = 7.9 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Frame = +3 Query: 252 PAQR--SETQPPGSFFSSAPLPRRARVASSPTPHRITRSLPPSWQAS 386 P QR S + PP +S P P + R + SP P R PP Q S Sbjct: 618 PIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRS 664
>MAST1_HUMAN (Q9Y2H9) Microtubule-associated serine/threonine-protein kinase 1 (EC| 2.7.11.1) (Syntrophin-associated serine/threonine-protein kinase) Length = 1570 Score = 28.9 bits (63), Expect = 7.9 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +1 Query: 184 QRWRTEIDHVSSMLRGKRPRGTLRRSGPKPSRPDPSFLPHRCRAAHGWHHPRPPTA 351 +RW E+ + L G R + + P+P PS P +C A P PP + Sbjct: 1478 ERWVLEVVEERTTLSGPRSKPASPKLSPEPQ--TPSLAPAKCSAPSSAVTPVPPAS 1531 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,190,534 Number of Sequences: 219361 Number of extensions: 1232941 Number of successful extensions: 4373 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3965 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4334 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)