>ref|XM_466789.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 522

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                       
Query: 268 aacgaggcccggggccccctccccttcgccgccttcttcaacaccttcgacggcgccgac 327
           ||||||||||| || |||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 273 aacgaggcccgcgggcccctccccttcgccggcttctacaactccttcgacggcgccgac 332

                                   
Query: 328 tttgacgactccgatctggcctga 351
           || |||||| |||| || ||||||
Sbjct: 333 ttcgacgacaccgacctcgcctga 356



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                 
Query: 148 atggaggacgacgccatcaccacgctcatggacatcgacgactccccgcgcagc 201
           ||||| ||||||||||||||  |||| |||||||||||||||||||| ||||||
Sbjct: 144 atggacgacgacgccatcacggcgctgatggacatcgacgactccccccgcagc 197

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                            
Query: 268      aacgaggcccggggccccctccccttcgccgccttcttcaacaccttcgacggcgccgac 327
                ||||||||||| || |||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 24690926 aacgaggcccgcgggcccctccccttcgccggcttctacaactccttcgacggcgccgac 24690985

                                        
Query: 328      tttgacgactccgatctggcctga 351
                || |||||| |||| || ||||||
Sbjct: 24690986 ttcgacgacaccgacctcgcctga 24691009



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                      
Query: 148      atggaggacgacgccatcaccacgctcatggacatcgacgactccccgcgcagc 201
                ||||| ||||||||||||||  |||| |||||||||||||||||||| ||||||
Sbjct: 24690797 atggacgacgacgccatcacggcgctgatggacatcgacgactccccccgcagc 24690850

>dbj|AP004059.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1372_D06
          Length = 129242

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                         
Query: 268   aacgaggcccggggccccctccccttcgccgccttcttcaacaccttcgacggcgccgac 327
             ||||||||||| || |||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 72324 aacgaggcccgcgggcccctccccttcgccggcttctacaactccttcgacggcgccgac 72383

                                     
Query: 328   tttgacgactccgatctggcctga 351
             || |||||| |||| || ||||||
Sbjct: 72384 ttcgacgacaccgacctcgcctga 72407



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                   
Query: 148   atggaggacgacgccatcaccacgctcatggacatcgacgactccccgcgcagc 201
             ||||| ||||||||||||||  |||| |||||||||||||||||||| ||||||
Sbjct: 72195 atggacgacgacgccatcacggcgctgatggacatcgacgactccccccgcagc 72248

>dbj|AK109256.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-185-A07, full
           insert sequence
          Length = 522

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                       
Query: 268 aacgaggcccggggccccctccccttcgccgccttcttcaacaccttcgacggcgccgac 327
           ||||||||||| || |||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 273 aacgaggcccgcgggcccctccccttcgccggcttctacaactccttcgacggcgccgac 332

                                   
Query: 328 tttgacgactccgatctggcctga 351
           || |||||| |||| || ||||||
Sbjct: 333 ttcgacgacaccgacctcgcctga 356



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 154 gacgacgccatcaccacgctcatggacatcgacgactccccgcgcagc 201
           ||||||||||||||  |||| |||||||||||||||||||| ||||||
Sbjct: 150 gacgacgccatcacggcgctgatggacatcgacgactccccccgcagc 197

>gb|AY107373.1| Zea mays PCO064567 mRNA sequence
          Length = 546

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                   
Query: 148 atggaggacgacgccatcaccacgctcatggacatcgacgactccccgcgcagcgc 203
           |||||||||||||||||| | ||||||||||||||||||||||| |||| ||||||
Sbjct: 94  atggaggacgacgccatctcgacgctcatggacatcgacgactcgccgctcagcgc 149



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                       
Query: 274 gcccggggccccctccccttcgccgccttcttcaacaccttcgacggcgccgactttgac 333
           ||||| || |||||||||||  |||  |||||||||| ||||||||||||||| || |||
Sbjct: 238 gcccgcgggcccctccccttttccgggttcttcaacagcttcgacggcgccgatttcgac 297

              
Query: 334 gac 336
           |||
Sbjct: 298 gac 300

>gb|AY648560.1| Klebsiella pneumoniae strain M5a1 Orf1 gene, partial cds; LysR-like
            regulatory protein (mhbR), putative 3-hydroxybenzoate
            transporter (mhbT), gentisate 1,2-dioxygenase (mhbD),
            fumarylpyruvate hydrolase (mhbH), maleylpyruvate
            isomerase (mhbI), 3-hydroxybenzoate-6-hydroxylase (mhbM),
            and Orf2 genes, complete cds; and Orf3 gene, partial cds
          Length = 8216

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 181  atcgacgactccccgcgcagcgccgg 206
            |||||||||| |||||||||||||||
Sbjct: 2925 atcgacgactgcccgcgcagcgccgg 2900

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 291     cttcgccgccttcttcaacaccttc 315
               |||||||| ||||||||||||||||
Sbjct: 1897397 cttcgccggcttcttcaacaccttc 1897373

>ref|XM_323057.1| Neurospora crassa OR74A hypothetical protein ( (AL513443) related to
            aromatic amino acid aminotransferase I [Neurospora crassa
            OR74A]  ) (NCU03756.1) partial mRNA
          Length = 2022

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 53   cccatcaccctcgccaccacc 73
            |||||||||||||||||||||
Sbjct: 1979 cccatcaccctcgccaccacc 1959

>ref|XM_956010.1| Neurospora crassa OR74A hypothetical protein ( (AL513443) related to
            aromatic amino acid aminotransferase I [Neurospora crassa
            OR74A]  ) (NCU03756.1) partial mRNA
          Length = 2022

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 53   cccatcaccctcgccaccacc 73
            |||||||||||||||||||||
Sbjct: 1979 cccatcaccctcgccaccacc 1959

>emb|AL513443.1|NC93G11 Neurospora crassa DNA linkage group V Cosmid contig 93G11
          Length = 86075

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 53    cccatcaccctcgccaccacc 73
             |||||||||||||||||||||
Sbjct: 43997 cccatcaccctcgccaccacc 44017

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 303    cttcaacaccttcgacggcgccgac 327
              |||||||||||||| ||||||||||
Sbjct: 671795 cttcaacaccttcgtcggcgccgac 671771

>gb|AF000233.1|RSAF000233 Rhodobacter sphaeroides nitric oxide reductase operon: norC, norB,
            norQ, norD, nnrT and nnrU genes, complete cds
          Length = 5984

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 243  ctcccaccgcatgggcggccg 263
            |||||||||||||||||||||
Sbjct: 2160 ctcccaccgcatgggcggccg 2140

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 353    cgaggctcgtctcccggtac 372
              ||||||||||||||||||||
Sbjct: 571440 cgaggctcgtctcccggtac 571421

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     cgaggctcgtctcccggtac 372
               ||||||||||||||||||||
Sbjct: 3203330 cgaggctcgtctcccggtac 3203349

>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ccatcaccctcgccaccacc 73
              ||||||||||||||||||||
Sbjct: 487123 ccatcaccctcgccaccacc 487104

>ref|XM_842694.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0764)
            partial mRNA
          Length = 5907

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   ccatcaccctcgccaccacc 73
            ||||||||||||||||||||
Sbjct: 3562 ccatcaccctcgccaccacc 3543

>emb|AL355388.30| Human DNA sequence from clone RP11-336K24 on chromosome 1 Contains the
             5' end of the RIT1 gene for Ras-like without CAAX 1, the
             gene for a novel protein (KIAA0907), the ARHGEF2 gene for
             rho/rac guanine nucleotide exchange factor (GEF) 2, four
             novel genes, the SSR2 gene for signal sequence receptor
             beta (translocon-associated protein beta), the C1orf6 gene
             for chromosome 1 open reading frame 6, the gene for
             mitogen-activated protein-binding protein-interacting
             protein (MAPBPIP), the RAB25 gene for RAB25 (member RAS
             oncogene family), the 5' end of the LMNA gene for lamin
             A/C and three CpG islands, complete sequence
          Length = 205463

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   aggggacctcctccactccc 247
             ||||||||||||||||||||
Sbjct: 60065 aggggacctcctccactccc 60084

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     cgaggctcgtctcccggtac 372
               ||||||||||||||||||||
Sbjct: 2933196 cgaggctcgtctcccggtac 2933215

>emb|AL583924.1|MLEPRTN8 Mycobacterium leprae strain TN complete genome; segment 8/10
          Length = 342300

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 160    gccatcaccacgctcatggacatcgacgactc 191
              |||||||||||| |||||||| |||| |||||
Sbjct: 110941 gccatcaccacgatcatggacttcgaagactc 110972

>emb|AL008609.1|MLCB1788 Mycobacterium leprae cosmid B1788
          Length = 39228

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 160   gccatcaccacgctcatggacatcgacgactc 191
             |||||||||||| |||||||| |||| |||||
Sbjct: 15543 gccatcaccacgatcatggacttcgaagactc 15574

>gb|AC159808.2| Mus musculus BAC clone RP24-357G23 from chromosome 12, complete
             sequence
          Length = 155139

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 284   ccctccccttcgccgccttcttca 307
             ||||||||| ||||||||||||||
Sbjct: 55837 ccctcccctacgccgccttcttca 55860

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     cccaccgacgccccatcacc 61
              ||||||||||||||||||||
Sbjct: 218074 cccaccgacgccccatcacc 218055

>gb|AC092160.5| Homo sapiens BAC clone RP11-471N11 from 2, complete sequence
          Length = 113984

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   ccttcttcaacaccttcgac 318
             ||||||||||||||||||||
Sbjct: 83120 ccttcttcaacaccttcgac 83101

>gb|AF263289.1|AF263289 Mus musculus strain C57BL/6JEi Etsrp81 gene sequence
          Length = 397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 284 ccctccccttcgccgccttcttca 307
           ||||||||| ||||||||||||||
Sbjct: 318 ccctcccctacgccgccttcttca 295

>gb|AF109633.1|MMETVP01 Mus musculus ets variant protein ER81 gene, exons 1 through 4
          Length = 6524

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 284  ccctccccttcgccgccttcttca 307
            ||||||||| ||||||||||||||
Sbjct: 2183 ccctcccctacgccgccttcttca 2160

>emb|CT009742.12| Mouse DNA sequence from clone RP23-306D19 on chromosome 12, complete
             sequence
          Length = 163039

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 284   ccctccccttcgccgccttcttca 307
             ||||||||| ||||||||||||||
Sbjct: 11082 ccctcccctacgccgccttcttca 11105

>gb|AF085689.1|AF085689 Neisseria lactamica penicillin-binding protein 1 (ponA) gene,
            complete cds
          Length = 2521

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    gccccgccaccaaaggctgc 25
            ||||||||||||||||||||
Sbjct: 1952 gccccgccaccaaaggctgc 1933

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     cccaccgacgccccatcacc 61
              ||||||||||||||||||||
Sbjct: 218074 cccaccgacgccccatcacc 218055

>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    cccaccgacgccccatcacc 61
             ||||||||||||||||||||
Sbjct: 86919 cccaccgacgccccatcacc 86938


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,578,394
Number of Sequences: 3902068
Number of extensions: 2578394
Number of successful extensions: 53949
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53406
Number of HSP's gapped (non-prelim): 543
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)