ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63b01 |
|---|---|
| Clone Library Name | barley_pub |
>DUS8_MOUSE (O09112) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC| 3.1.3.16) (Neuronal tyrosine threonine phosphatase 1) Length = 663 Score = 31.6 bits (70), Expect = 0.49 Identities = 19/66 (28%), Positives = 27/66 (40%) Frame = -3 Query: 207 PPPEGVPFDGVPLPHPEAGEQASTTVGEESTSMARTSSAETFVDSIAATTCELWRSTESA 28 P P P G+PLP S G E+ + AR S D+ +T + + Sbjct: 316 PEPLMGPAAGIPLPRLPPSTSESAATGSEAATAAREGSPSAGGDAPIPSTAPATSALQQG 375 Query: 27 LRGVLL 10 LRG+ L Sbjct: 376 LRGLHL 381
>CUTL1_RAT (P53565) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) (CDP2) (Fragment) Length = 862 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 8/48 (16%) Frame = -3 Query: 207 PPPEGVPFDGVPLPH---PEAGEQASTT-----VGEESTSMARTSSAE 88 PPPEG+ P+P+ P AGE A+T+ + E+ AR AE Sbjct: 747 PPPEGLADAPAPVPNLAAPAAGEDAATSATAPAMATEAPGAARAGPAE 794
>DPOD3_HUMAN (Q15054) DNA polymerase delta subunit 3 (DNA polymerase delta| subunit p66) Length = 466 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = -3 Query: 207 PPPEGVPFDGVPLPHPEAGEQASTTVGEESTSMARTSSAETFVDSIAATTCELWRSTES 31 PPP P + VP PE S++ GE R ++T++D E +ES Sbjct: 352 PPPPSPPLEPVPKTEPEPPSVKSSS-GENKRKRKRVLKSKTYLDGEGCIVTEKVYESES 409
>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (AOF2 protein) (BRAF35-HDAC complex protein BHC110) Length = 853 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = -3 Query: 204 PPEGVPFDGVPLPHPEAGEQASTTVGEESTSMARTSSAET 85 PP P G+ P AG QA T G S + T AET Sbjct: 66 PPRASPPGGLAEPPGSAGPQAGPTAGPGSATPMETGIAET 105
>FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl-ca Length = 2505 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Frame = -3 Query: 168 PHPEAGEQASTTVGEES--TSMARTSSAETFVDSIAATTC---ELWRSTESAL 25 P P + ST++ E +S+ARTSSAE V+++ + LW E A+ Sbjct: 705 PRPRSARWLSTSIPEAQWQSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAV 757
>FAS_MOUSE (P19096) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2504 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Frame = -3 Query: 168 PHPEAGEQASTTVGEES--TSMARTSSAETFVDSIAATTC---ELWRSTESAL 25 P P + ST++ E +S+ARTSSAE V+++ + LW E A+ Sbjct: 705 PRPRSARWLSTSIPEAQWQSSLARTSSAEYNVNNLVSPVLFQEALWHIPEHAV 757
>FRIZ2_DROME (Q9VVX3) Protein frizzled-2 precursor (dFz2)| Length = 694 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -3 Query: 174 PLPHPEAGEQASTTVGEESTSMARTSSAETFVDSIAATT 58 P+PHP AG VG + S+ T + S+A+T+ Sbjct: 639 PIPHPYAGSGMGMPVGSAAGSLLATPYTQAGGASVASTS 677
>SYI_THIDA (Q3SHS3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 929 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -3 Query: 195 GVPFDGVPLPHPEAGEQASTTVGEESTSMARTSSAET 85 G +G+PL HP Q VGE T+ A T + T Sbjct: 296 GQMLEGLPLWHPFQDRQVPVIVGEHVTADAGTGAVHT 332
>FAS_HUMAN (P49327) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2511 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Frame = -3 Query: 168 PHPEAGEQASTTVGEES--TSMARTSSAETFVDSIAATTC---ELWRSTESAL 25 P P + ST++ E +S+ARTSSAE V+++ + LW E A+ Sbjct: 705 PKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAV 757
>ANK3_HUMAN (Q12955) Ankyrin-3 (ANK-3) (Ankyrin-G)| Length = 4377 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -3 Query: 180 GVPLPHPEAGEQASTTVGEESTSMARTSSAETFVD 76 G P P PE E++ +STS+ +T+ ET V+ Sbjct: 3195 GKPSPIPEVSEESEEEEQAKSTSLKQTTVEETAVE 3229
>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and| dental anomalies protein) Length = 1630 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = -3 Query: 207 PPPEGVPFDGVPLPHPE---AGEQASTTVGEESTSMARTSSA 91 PPP P D PH E AGE+++ + E + + SSA Sbjct: 71 PPPLPAPADQTQPPHGEASVAGEESTAGIPEAAPAAGEASSA 112
>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (BRAF35-HDAC complex protein BHC110) Length = 852 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = -3 Query: 204 PPEGVPFDGVPLPHPEAGEQASTTVGEESTSMARTSSAET 85 PP P G+ P AG QA TV S + T AET Sbjct: 65 PPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAET 104 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,819,212 Number of Sequences: 219361 Number of extensions: 333658 Number of successful extensions: 1739 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1638 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1735 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
