>gb|AY105945.1| Zea mays PCO115682 mRNA sequence
          Length = 947

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                       
Query: 68  gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 127
           |||||||||||||| ||| |||||||||||||||| || |||||||||| ||||||||||
Sbjct: 33  gcaatggagtccaccaagctctccgcgctgctggtgctcgccatgctcgcgctctcctcg 92

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                          
Query: 69       caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 126
                ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 32828010 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 32827953

>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full
           insert sequence
          Length = 1255

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 69  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 126
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116

>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full
           insert sequence
          Length = 1242

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 69  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 126
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116

>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full
           insert sequence
          Length = 1251

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 69  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 126
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 55  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 112

>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full
           insert sequence
          Length = 1272

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 69  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 126
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 63  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 120

>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full
           insert sequence
          Length = 1257

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 69  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 126
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 61  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 118

>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
             sequence
          Length = 76546

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 69    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 126
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 23245 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 23188

>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 69    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 126
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 90297 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 90240

>ref|XM_474092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 783

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 71  atggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 126
           ||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 1   atggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 56

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 177     cgccgtcgaacggcacgccctcg 199
               |||||||||||||||||||||||
Sbjct: 2940239 cgccgtcgaacggcacgccctcg 2940217

>ref|XM_862060.1| PREDICTED: Canis familiaris hypothetical protein LOC610656
           (LOC610656), mRNA
          Length = 1146

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 301 cgccgccccgaccgcgggcgg 321
           |||||||||||||||||||||
Sbjct: 306 cgccgccccgaccgcgggcgg 286

>emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid
          Length = 121587

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 96     tgctggttctggccatgctcg 116
              |||||||||||||||||||||
Sbjct: 104132 tgctggttctggccatgctcg 104112

>gb|DQ397621.1| Cenarchaeum symbiosum clone C21E11, complete sequence
          Length = 41700

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    gtggttgctgcaatggagtcc 79
             |||||||||||||||||||||
Sbjct: 13074 gtggttgctgcaatggagtcc 13094

>gb|AE005854.1| Caulobacter crescentus CB15 section 180 of 359 of the complete genome
          Length = 11094

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 177  cgccgtcgaacggcacgccct 197
            |||||||||||||||||||||
Sbjct: 6553 cgccgtcgaacggcacgccct 6573

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 195     cctcgggcggcggcatcagc 214
               ||||||||||||||||||||
Sbjct: 1928034 cctcgggcggcggcatcagc 1928015

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    cccggtcatcggcgtcgtcg 239
              ||||||||||||||||||||
Sbjct: 625982 cccggtcatcggcgtcgtcg 626001

>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    ctccggtcatcggcgtcgtc 271
              ||||||||||||||||||||
Sbjct: 101127 ctccggtcatcggcgtcgtc 101108

>gb|AC116677.11| Mus musculus chromosome 3, clone RP23-111M12, complete sequence
          Length = 214206

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      caggcacagcagcaccccac 23
              ||||||||||||||||||||
Sbjct: 104259 caggcacagcagcaccccac 104240

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 254     ccggtcatcggcgtcgtcgg 273
               ||||||||||||||||||||
Sbjct: 3541023 ccggtcatcggcgtcgtcgg 3541042



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 221     ccggtcatcggcgtcgtcgg 240
               ||||||||||||||||||||
Sbjct: 3541023 ccggtcatcggcgtcgtcgg 3541042

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 252      ctccggtcatcggcgtcgtc 271
                ||||||||||||||||||||
Sbjct: 22841410 ctccggtcatcggcgtcgtc 22841391

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 190     cacgccctcgggcggcggca 209
               ||||||||||||||||||||
Sbjct: 7955812 cacgccctcgggcggcggca 7955831

>dbj|AK062389.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-C07, full
           insert sequence
          Length = 745

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 229 cggcgtcgtcggtggcaccgtcactccg 256
           |||||||| ||| |||||||||||||||
Sbjct: 427 cggcgtcgacggcggcaccgtcactccg 400



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 262 cggcgtcgtcggtggcaccgtcactccg 289
           |||||||| ||| |||||||||||||||
Sbjct: 427 cggcgtcgacggcggcaccgtcactccg 400

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 313     cgcgggcggcgtcgtcggncagg 335
               |||||||||||||||||| ||||
Sbjct: 4129575 cgcgggcggcgtcgtcgggcagg 4129553

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 252      ctccggtcatcggcgtcgtc 271
                ||||||||||||||||||||
Sbjct: 23151320 ctccggtcatcggcgtcgtc 23151301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,159,721
Number of Sequences: 3902068
Number of extensions: 2159721
Number of successful extensions: 45959
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45269
Number of HSP's gapped (non-prelim): 690
length of query: 374
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 352
effective length of database: 17,147,199,772
effective search space: 6035814319744
effective search space used: 6035814319744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)