ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63a06 |
|---|---|
| Clone Library Name | barley_pub |
>SNT2_SCHPO (Q10077) Lid2 complex component snt2 (Lid2C component snt2)| Length = 1131 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = +1 Query: 208 VIRPGDSVLMKAPDSSKPPYVAKIEEIEAAGPR-GANV--KVKVRWYYRPEESIGGRRPF 378 +I+P D VL+ +P +P +A+I E + P N+ V++ WY+RP + +R Sbjct: 104 LIQPNDFVLVNSPFPGEPFQIARIISFEKSRPCVSTNLYDSVRLNWYFRPRDI---QRHL 160 Query: 379 HGEXEVFLSDHQDVQSADTIEWQCNV 456 +F S H D+ + +++ +C V Sbjct: 161 TDTRLLFASMHSDIYNIGSVQEKCTV 186
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 33.1 bits (74), Expect = 0.44 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 21/97 (21%) Frame = +1 Query: 244 PDSSKPPYVAKIEEIEAAGPRGANVKVKVRWYYRPEE----------------SIGGRR- 372 P +S+PP G + ++ + V+WYYR E + GR Sbjct: 155 PVASQPPQHLSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNENDSGREL 214 Query: 373 ----PFHGEXEVFLSDHQDVQSADTIEWQCNVYSFRD 471 P E+F+SD+ D A + +CN+ F D Sbjct: 215 VITDPVIKNRELFISDYVDTYHAAALRGKCNISHFSD 251
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 33.1 bits (74), Expect = 0.44 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 21/97 (21%) Frame = +1 Query: 244 PDSSKPPYVAKIEEIEAAGPRGANVKVKVRWYYRPEE----------------SIGGRR- 372 P +S+PP G + ++ + V+WYYR E + GR Sbjct: 156 PVASQPPQHLSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNENDSGREL 215 Query: 373 ----PFHGEXEVFLSDHQDVQSADTIEWQCNVYSFRD 471 P E+F+SD+ D A + +CN+ F D Sbjct: 216 VITDPVIKNRELFISDYVDTYHAAALRGKCNISHFSD 252
>PB1_HUMAN (Q86U86) Protein polybromo-1 (hPB1) (Polybromo-1D) (BRG1-associated| factor 180) (BAF180) Length = 1689 Score = 33.1 bits (74), Expect = 0.44 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%) Frame = +1 Query: 220 GDSVLMKAPDSSKPPYVAKIEEI--EAAGPRGANVKVKVRWYYRPEESIGGRRPFHGEXE 393 GD V ++ +++ P++ IE + ++AG + + W+YRP E+ E E Sbjct: 961 GDYVYVEPAEANLQPHIVCIERLWEDSAGEKW----LYGCWFYRPNETFHLATRKFLEKE 1016 Query: 394 VFLSDHQDVQSADTIEWQCNVYSFRDYTSL 483 VF SD+ + I +C V ++Y L Sbjct: 1017 VFKSDYYNKVPVSKILGKCVVMFVKEYFKL 1046 Score = 29.6 bits (65), Expect = 4.9 Identities = 24/94 (25%), Positives = 41/94 (43%) Frame = +1 Query: 199 SDGVIRPGDSVLMKAPDSSKPPYVAKIEEIEAAGPRGANVKVKVRWYYRPEESIGGRRPF 378 +D ++ GD V +K+ +P ++ IE R + PEE+ Sbjct: 1154 NDMWLKVGDCVFIKSHGLVRP----RVGRIEKVWVRDGAAYFYGPIFIHPEETEHEPTKM 1209 Query: 379 HGEXEVFLSDHQDVQSADTIEWQCNVYSFRDYTS 480 + EVFLS+ ++ I +C V SF+D+ S Sbjct: 1210 FYKKEVFLSNLEETCPMTCILGKCAVLSFKDFLS 1243
>PB1_CHICK (Q90941) Protein polybromo-1| Length = 1633 Score = 33.1 bits (74), Expect = 0.44 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%) Frame = +1 Query: 220 GDSVLMKAPDSSKPPYVAKIEEI--EAAGPRGANVKVKVRWYYRPEESIGGRRPFHGEXE 393 GD V ++ +++ P++ IE + ++AG + + W+YRP E+ E E Sbjct: 959 GDYVYVEPAEANLQPHIVCIERLWEDSAGEKW----LYGCWFYRPNETFHLATRKFLEKE 1014 Query: 394 VFLSDHQDVQSADTIEWQCNVYSFRDYTSL 483 VF SD+ + I +C V ++Y L Sbjct: 1015 VFKSDYYNKVPVSKILGKCVVMFVKEYFKL 1044
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 33.1 bits (74), Expect = 0.44 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 61/166 (36%) Frame = +1 Query: 157 RTPRRTLESYTIKGSDGVIRPGDSVLMKAPDSSKPPYVAKIEEIEAA------------- 297 RT + SY I D V RPGD V +++ + P ++ I++ + Sbjct: 88 RTDTGEITSY-ITEDDVVYRPGDCVYIESRRPNTPYFICSIQDFKLVHSSQACCRSPAPA 146 Query: 298 ------------------------GPRGA---NVKVKVRWYYRPEE-------------- 354 GP G+ ++ + V+WYYR E Sbjct: 147 FCDPPACSLPVAPQPPQHLSEAGRGPGGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRH 206 Query: 355 --SIGGRR-----PFHGEXEVFLSDHQDVQSADTIEWQCNVYSFRD 471 + GR P E+F+SD+ D A + +CN+ F D Sbjct: 207 NENDSGRELVITDPVIKNRELFISDYVDTYHAAALRGKCNISHFSD 252
>DNMT1_RAT (Q9Z330) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1)| (DNA methyltransferase I) (DNA MTase RnoIP) (MCMT) (M.RnoIP) Length = 1622 Score = 31.2 bits (69), Expect = 1.7 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 9/107 (8%) Frame = +1 Query: 163 PRRTLESYT--IKGSDGVIRPGDSVLMKAPDSSKPPYVAKIEEIEAAGPRG-----ANVK 321 PR T Y+ IKGS+ D+ +P + +I+EI +G A++K Sbjct: 974 PRDTYRKYSDYIKGSN-------------LDAPEPYRIGRIKEIYCGKKKGGKVNEADIK 1020 Query: 322 VKVRWYYRPEESIGG-RRPFHGEXE-VFLSDHQDVQSADTIEWQCNV 456 +++ +YRPE + + +H + ++ SD + V ++ +C V Sbjct: 1021 IRLYKFYRPENTHKSIQATYHADINLLYWSDEEAVVDFSDVQGRCTV 1067
>RSC1_SCHPO (O74964) Chromatin structure remodeling complex protein rsc1| (Remodel the structure of chromatin complex subunit 1) Length = 803 Score = 31.2 bits (69), Expect = 1.7 Identities = 22/64 (34%), Positives = 32/64 (50%) Frame = +1 Query: 208 VIRPGDSVLMKAPDSSKPPYVAKIEEIEAAGPRGANVKVKVRWYYRPEESIGGRRPFHGE 387 ++ GD VL++ P S P V++I I + N V V WY RPE+++ E Sbjct: 352 LLNVGDWVLIRNPADSSKPIVSQIYRIWKSDD-DINY-VTVCWYLRPEQTVHRADAVFYE 409 Query: 388 XEVF 399 EVF Sbjct: 410 NEVF 413
>TRC5_ECOLI (P27190) DNA primase traC (EC 2.7.7.-) (Replication primase)| Length = 1448 Score = 31.2 bits (69), Expect = 1.7 Identities = 19/65 (29%), Positives = 33/65 (50%) Frame = +1 Query: 244 PDSSKPPYVAKIEEIEAAGPRGANVKVKVRWYYRPEESIGGRRPFHGEXEVFLSDHQDVQ 423 P + + Y + + E GPR A V ++ Y P+E++ R + G +V L Q+V+ Sbjct: 20 PGALELAYKFREDAAELYGPRAAEVPADMKGGYVPKETLHAGRAYRGRVDVPL---QNVE 76 Query: 424 SADTI 438 SA + Sbjct: 77 SASDL 81
>ORC1_MOUSE (Q9Z1N2) Origin recognition complex subunit 1| Length = 840 Score = 30.8 bits (68), Expect = 2.2 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 5/87 (5%) Frame = +1 Query: 196 GSDGVIRPGDSVLMKAPDSSKPPYVAKIEEIEAAGPRGANVK-VKVRWYYRPEESIGGRR 372 GS+ I+ G VL++ D+ K PYVAK+ E+ G K +V+W+ R E +R Sbjct: 41 GSEIHIKVGQFVLIQGEDNKK-PYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKR 99 Query: 373 PFHGEX----EVFLSDHQDVQSADTIE 441 G E+F D D + +E Sbjct: 100 HLLGRSPPAQEIFWYDCSDWDNKINVE 126
>KYNU_NEUCR (Q7RXY2) Putative kynureninase (EC 3.7.1.3) (L-kynurenine| hydrolase) Length = 468 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/63 (30%), Positives = 30/63 (47%) Frame = +1 Query: 238 KAPDSSKPPYVAKIEEIEAAGPRGANVKVKVRWYYRPEESIGGRRPFHGEXEVFLSDHQD 417 KA + P A + E+ AN+ + + +YRP+ I GR E + F SDH Sbjct: 107 KAAELIAPVVGANVSEVAVMQTLTANIHLLMSAFYRPD--INGRHKIILENKAFPSDHFA 164 Query: 418 VQS 426 V++ Sbjct: 165 VET 167
>MRP6_HUMAN (O95255) Multidrug resistance-associated protein 6 (ATP-binding| cassette sub-family C member 6) (Anthracycline resistance-associated protein) (Multi-specific organic anion transporter-E) (MOAT-E) Length = 1503 Score = 29.6 bits (65), Expect = 4.9 Identities = 9/28 (32%), Positives = 14/28 (50%) Frame = +3 Query: 327 SAVVLPARRVYWWAEAIPWRXGGVPLRP 410 + P++ +WW + WR PLRP Sbjct: 206 TGAAFPSKATFWWVSGLVWRGYRRPLRP 233
>DNMT1_HUMAN (P26358) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1)| (DNA methyltransferase HsaI) (DNA MTase HsaI) (MCMT) (M.HsaI) Length = 1616 Score = 29.3 bits (64), Expect = 6.4 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Frame = +1 Query: 247 DSSKPPYVAKIEEI-----EAAGPRGANVKVKVRWYYRPEESIGGR-RPFHGEXE-VFLS 405 D+ +P + +I+EI P ++K++V +YRPE + +H + ++ S Sbjct: 986 DAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWS 1045 Query: 406 DHQDVQSADTIEWQCNV 456 D + V ++ +C V Sbjct: 1046 DEEAVVDFKAVQGRCTV 1062
>THIE_PROMM (Q7V8I3) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 353 Score = 29.3 bits (64), Expect = 6.4 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +3 Query: 129 HVKDAGEVAADAAPDPGV-LHHQGIRRRHPPWRLCAHEGARLIKA 260 H D+ + A A D G+ L H + RH PW + A AR+ +A Sbjct: 59 HHHDSYKQARSTATDQGIGLSHPAQQERHEPWHVVAANCARVQEA 103
>ARI5B_MOUSE (Q8BM75) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (MRF1-like) (Modulator recognition factor protein 2) (MRF-2) (Developmentally and sexually retarded with transient immune abnormalities protein) Length = 1188 Score = 29.3 bits (64), Expect = 6.4 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +1 Query: 337 YYRPEESIGGRRPFHGEXEVF-LSDHQDVQSADTIEWQCNVYS 462 Y+ PE++ GR HGE EV +S+ V+ D ++W + +S Sbjct: 76 YFLPEDTPQGRNSDHGEDEVIAVSEKVIVKLEDLVKWAHSDFS 118
>ANPRB_RAT (P16067) Atrial natriuretic peptide receptor B precursor (ANP-B)| (ANPRB) (GC-B) (Guanylate cyclase B) (EC 4.6.1.2) (NPR-B) (Atrial natriuretic peptide B-type receptor) Length = 1047 Score = 28.9 bits (63), Expect = 8.3 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +3 Query: 348 RRVYWWAEAIPWRXGGVPLRPPRCA 422 ++++W IPW G PL P CA Sbjct: 416 KQIWWTGRPIPWVKGAPPLDNPPCA 440
>ANPRB_MOUSE (Q6VVW5) Atrial natriuretic peptide receptor B precursor (ANP-B)| (ANPRB) (GC-B) (Guanylate cyclase B) (EC 4.6.1.2) (NPR-B) (Atrial natriuretic peptide B-type receptor) Length = 1047 Score = 28.9 bits (63), Expect = 8.3 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +3 Query: 348 RRVYWWAEAIPWRXGGVPLRPPRCA 422 ++++W IPW G PL P CA Sbjct: 416 KQIWWTGRPIPWVKGAPPLDNPPCA 440
>ORC1_CRIGR (Q9JI69) Origin recognition complex subunit 1| Length = 850 Score = 28.9 bits (63), Expect = 8.3 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +1 Query: 211 IRPGDSVLMKAPDSSKPPYVAKIEEIEAAGPRGANVK-VKVRWYYRPEE------SIGGR 369 I+ G VL+K +++K PYVAK+ E+ G + + K +V+W R E + GR Sbjct: 47 IKVGQFVLIKGNNNAK-PYVAKLIELFEDGSKFHSKKCARVQWCVRFSEIPISKRHLLGR 105 Query: 370 RPFHGEXEVFLSDHQD 417 +P E+F D D Sbjct: 106 KP--AAQEIFWYDDPD 119
>EFGL_THEMA (Q9X1Y4) Elongation factor G-like protein| Length = 683 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 6/49 (12%) Frame = +1 Query: 205 GVIRPGDSVLMKAPDSSKP------PYVAKIEEIEAAGPRGANVKVKVR 333 GV+RPGD+V+ D ++ P + + +E+E+AGP V +K++ Sbjct: 316 GVLRPGDTVVNVQKDVTEKVGHVYVPILKQQKEVESAGPGEIVVLLKLK 364
>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (Mrf1-like) (Modulator recognition factor 2) (MRF-2) Length = 1188 Score = 28.9 bits (63), Expect = 8.3 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +1 Query: 337 YYRPEESIGGRRPFHGEXEVF-LSDHQDVQSADTIEW 444 Y+ PE++ GR HGE EV +S+ V+ D ++W Sbjct: 76 YFLPEDTPQGRNSDHGEDEVIAVSEKVIVKLEDLVKW 112
>RSC1_YEAST (P53236) Chromatin structure remodeling complex protein RSC1| (Remodel the structure of chromatin complex subunit 1) Length = 928 Score = 28.9 bits (63), Expect = 8.3 Identities = 20/82 (24%), Positives = 34/82 (41%) Frame = +1 Query: 220 GDSVLMKAPDSSKPPYVAKIEEIEAAGPRGANVKVKVRWYYRPEESIGGRRPFHGEXEVF 399 GD VL+ P+ P V +I + + N + WY+RPE+++ + EV Sbjct: 373 GDWVLLHNPNDINKPIVGQIFRLWST--TDGNKWLNACWYFRPEQTVHRVDRLFYKNEVM 430 Query: 400 LSDHQDVQSADTIEWQCNVYSF 465 + I+ +C V F Sbjct: 431 KTGQYRDHPIQDIKGKCYVIHF 452 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,180,738 Number of Sequences: 219361 Number of extensions: 1202479 Number of successful extensions: 3730 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3626 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3716 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
