ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast63a06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X77575.1|HVES43 H.vulgare (Dbg576) ES43 mRNA Length = 1058 Score = 696 bits (351), Expect = 0.0 Identities = 376/382 (98%), Gaps = 2/382 (0%) Strand = Plus / Plus Query: 129 catgtcaaagacgccggggaagtcgccgcggacgccgcgccggaccctggagtcctacac 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 101 catgtcaaagacgccggggaagtcgccgcggacgccgcgccggaccctggagtcctacac 160 Query: 189 catcaagggatccgacggcgtcatccgccctggagactctgtgctcatgaaggcgcccga 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 161 catcaagggatccgacggcgtcatccgccctggagactctgtgctcatgaaggcgcccga 220 Query: 249 ctcatcaaagcctccatatgtggccaagattgaggaaatcgaggcagcaggacctcgggg 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 221 ctcatcaaagcctccatatgtggccaagattgaggaaatcgaggcagcaggacctcgggg 280 Query: 309 cgcaaatgtcaaggttaaagtgcggtggtactaccggccagaagagtctattggtgggcg 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 281 cgcaaatgtcaaggttaaagtgcggtggtactaccggccagaagagtctattggtgggcg 340 Query: 369 gaggccattccatggcgaanaggaggtgttcctctccgaccaccaagatgtgcagagtgc 428 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 341 gaggccattccattgcgaaaaggaggtgttcctctccgaccaccaagatgtgcagagtgc 400 Query: 429 tgacaccatagagtggcagtgcaatgtctacagcttccgggactacacc-agcttgctgc 487 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 401 tgacaccatagagtgcaagtgcaatgtctacagcttccgggactacaccaagcttgctgc 460 Query: 488 tgtc-atcctgaggactatttt 508 |||| ||||||||||||||||| Sbjct: 461 tgtcaatcctgaggactatttt 482
>ref|NM_185042.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1156 Score = 119 bits (60), Expect = 9e-24 Identities = 215/267 (80%) Strand = Plus / Plus Query: 175 ctggagtcctacaccatcaagggatccgacggcgtcatccgccctggagactctgtgctc 234 |||||||| | |||||||||||| ||||||| |||||| ||||| || ||||||| Sbjct: 180 ctggagtcgttcaccatcaaggggcccgacggggtcatcaagcctggggatactgtgcta 239 Query: 235 atgaaggcgcccgactcatcaaagcctccatatgtggccaagattgaggaaatcgaggca 294 |||| ||| || |||||||||||| ||||||||||| | | |||||||||| |||||| Sbjct: 240 atgatggcacctgactcatcaaagaaaccatatgtggcaagggttgaggaaattgaggca 299 Query: 295 gcaggacctcggggcgcaaatgtcaaggttaaagtgcggtggtactaccggccagaagag 354 ||||||||| | | | | || ||| | || ||||||||||||||||| ||||||||| Sbjct: 300 acaggacctcaagcctctcaagtgaagatcaaggtgcggtggtactaccgcccagaagag 359 Query: 355 tctattggtgggcggaggccattccatggcgaanaggaggtgttcctctccgaccaccaa 414 || |||||||| ||| ||||||||||||| |||| || || || || |||||| | Sbjct: 360 tccattggtggccggcggccattccatggttcgaaggaagtatttctttctgaccactat 419 Query: 415 gatgtgcagagtgctgacaccatagag 441 ||| |||||||||||||||||||||| Sbjct: 420 gattcgcagagtgctgacaccatagag 446
>dbj|AK104450.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-B02, full insert sequence Length = 1109 Score = 119 bits (60), Expect = 9e-24 Identities = 215/267 (80%) Strand = Plus / Plus Query: 175 ctggagtcctacaccatcaagggatccgacggcgtcatccgccctggagactctgtgctc 234 |||||||| | |||||||||||| ||||||| |||||| ||||| || ||||||| Sbjct: 136 ctggagtcgttcaccatcaaggggcccgacggggtcatcaagcctggggatactgtgcta 195 Query: 235 atgaaggcgcccgactcatcaaagcctccatatgtggccaagattgaggaaatcgaggca 294 |||| ||| || |||||||||||| ||||||||||| | | |||||||||| |||||| Sbjct: 196 atgatggcacctgactcatcaaagaaaccatatgtggcaagggttgaggaaattgaggca 255 Query: 295 gcaggacctcggggcgcaaatgtcaaggttaaagtgcggtggtactaccggccagaagag 354 ||||||||| | | | | || ||| | || ||||||||||||||||| ||||||||| Sbjct: 256 acaggacctcaagcctctcaagtgaagatcaaggtgcggtggtactaccgcccagaagag 315 Query: 355 tctattggtgggcggaggccattccatggcgaanaggaggtgttcctctccgaccaccaa 414 || |||||||| ||| ||||||||||||| |||| || || || || |||||| | Sbjct: 316 tccattggtggccggcggccattccatggttcgaaggaagtatttctttctgaccactat 375 Query: 415 gatgtgcagagtgctgacaccatagag 441 ||| |||||||||||||||||||||| Sbjct: 376 gattcgcagagtgctgacaccatagag 402
>dbj|AK072569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128J04, full insert sequence Length = 1142 Score = 119 bits (60), Expect = 9e-24 Identities = 215/267 (80%) Strand = Plus / Plus Query: 175 ctggagtcctacaccatcaagggatccgacggcgtcatccgccctggagactctgtgctc 234 |||||||| | |||||||||||| ||||||| |||||| ||||| || ||||||| Sbjct: 161 ctggagtcgttcaccatcaaggggcccgacggggtcatcaagcctggggatactgtgcta 220 Query: 235 atgaaggcgcccgactcatcaaagcctccatatgtggccaagattgaggaaatcgaggca 294 |||| ||| || |||||||||||| ||||||||||| | | |||||||||| |||||| Sbjct: 221 atgatggcacctgactcatcaaagaaaccatatgtggcaagggttgaggaaattgaggca 280 Query: 295 gcaggacctcggggcgcaaatgtcaaggttaaagtgcggtggtactaccggccagaagag 354 ||||||||| | | | | || ||| | || ||||||||||||||||| ||||||||| Sbjct: 281 acaggacctcaagcctctcaagtgaagatcaaggtgcggtggtactaccgcccagaagag 340 Query: 355 tctattggtgggcggaggccattccatggcgaanaggaggtgttcctctccgaccaccaa 414 || |||||||| ||| ||||||||||||| |||| || || || || |||||| | Sbjct: 341 tccattggtggccggcggccattccatggttcgaaggaagtatttctttctgaccactat 400 Query: 415 gatgtgcagagtgctgacaccatagag 441 ||| |||||||||||||||||||||| Sbjct: 401 gattcgcagagtgctgacaccatagag 427
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 103 bits (52), Expect = 6e-19 Identities = 174/215 (80%) Strand = Plus / Plus Query: 227 ctgtgctcatgaaggcgcccgactcatcaaagcctccatatgtggccaagattgaggaaa 286 ||||||| |||| ||| || |||||||||||| ||||||||||| | | ||||||||| Sbjct: 33026931 ctgtgctaatgatggcacctgactcatcaaagaaaccatatgtggcaagggttgaggaaa 33026990 Query: 287 tcgaggcagcaggacctcggggcgcaaatgtcaaggttaaagtgcggtggtactaccggc 346 | |||||| ||||||||| | | | | || ||| | || ||||||||||||||||| | Sbjct: 33026991 ttgaggcaacaggacctcaagcctctcaagtgaagatcaaggtgcggtggtactaccgcc 33027050 Query: 347 cagaagagtctattggtgggcggaggccattccatggcgaanaggaggtgttcctctccg 406 |||||||||| |||||||| ||| ||||||||||||| |||| || || || || | Sbjct: 33027051 cagaagagtccattggtggccggcggccattccatggttcgaaggaagtatttctttctg 33027110 Query: 407 accaccaagatgtgcagagtgctgacaccatagag 441 ||||| | ||| |||||||||||||||||||||| Sbjct: 33027111 accactatgattcgcagagtgctgacaccatagag 33027145
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 103 bits (52), Expect = 6e-19 Identities = 174/215 (80%) Strand = Plus / Plus Query: 227 ctgtgctcatgaaggcgcccgactcatcaaagcctccatatgtggccaagattgaggaaa 286 ||||||| |||| ||| || |||||||||||| ||||||||||| | | ||||||||| Sbjct: 33117441 ctgtgctaatgatggcacctgactcatcaaagaaaccatatgtggcaagggttgaggaaa 33117500 Query: 287 tcgaggcagcaggacctcggggcgcaaatgtcaaggttaaagtgcggtggtactaccggc 346 | |||||| ||||||||| | | | | || ||| | || ||||||||||||||||| | Sbjct: 33117501 ttgaggcaacaggacctcaagcctctcaagtgaagatcaaggtgcggtggtactaccgcc 33117560 Query: 347 cagaagagtctattggtgggcggaggccattccatggcgaanaggaggtgttcctctccg 406 |||||||||| |||||||| ||| ||||||||||||| |||| || || || || | Sbjct: 33117561 cagaagagtccattggtggccggcggccattccatggttcgaaggaagtatttctttctg 33117620 Query: 407 accaccaagatgtgcagagtgctgacaccatagag 441 ||||| | ||| |||||||||||||||||||||| Sbjct: 33117621 accactatgattcgcagagtgctgacaccatagag 33117655
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 103 bits (52), Expect = 6e-19 Identities = 174/215 (80%) Strand = Plus / Minus Query: 227 ctgtgctcatgaaggcgcccgactcatcaaagcctccatatgtggccaagattgaggaaa 286 ||||||| |||| ||| || |||||||||||| ||||||||||| | | ||||||||| Sbjct: 96377 ctgtgctaatgatggcacctgactcatcaaagaaaccatatgtggcaagggttgaggaaa 96318 Query: 287 tcgaggcagcaggacctcggggcgcaaatgtcaaggttaaagtgcggtggtactaccggc 346 | |||||| ||||||||| | | | | || ||| | || ||||||||||||||||| | Sbjct: 96317 ttgaggcaacaggacctcaagcctctcaagtgaagatcaaggtgcggtggtactaccgcc 96258 Query: 347 cagaagagtctattggtgggcggaggccattccatggcgaanaggaggtgttcctctccg 406 |||||||||| |||||||| ||| ||||||||||||| |||| || || || || | Sbjct: 96257 cagaagagtccattggtggccggcggccattccatggttcgaaggaagtatttctttctg 96198 Query: 407 accaccaagatgtgcagagtgctgacaccatagag 441 ||||| | ||| |||||||||||||||||||||| Sbjct: 96197 accactatgattcgcagagtgctgacaccatagag 96163
>gb|AY109297.1| Zea mays PCO127283 mRNA sequence Length = 1233 Score = 83.8 bits (42), Expect = 5e-13 Identities = 116/141 (82%) Strand = Plus / Plus Query: 327 agtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcga 386 |||||||||||| || || ||||| ||||| || ||||| ||| ||||||| ||||| Sbjct: 256 agtgcggtggtattatcgaccagaggagtccataggtggtcggcggccatttcatggttc 315 Query: 387 anaggaggtgttcctctccgaccaccaagatgtgcagagtgctgacaccatagagtggca 446 ||||||| |||||||| |||||| | ||||| || |||||||||||||| ||| || | Sbjct: 316 caaggaggttttcctctctgaccactatgatgtacaaagtgctgacaccattgaggggaa 375 Query: 447 gtgcaatgtctacagcttccg 467 ||||||||| |||||||||| Sbjct: 376 atgcaatgtccacagcttccg 396
>ref|XM_476919.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1154 Score = 73.8 bits (37), Expect = 5e-10 Identities = 236/300 (78%), Gaps = 2/300 (0%) Strand = Plus / Plus Query: 169 cggaccctggagtcctacaccatcaagggatccgacggcgtcatccgccctggagactct 228 |||| ||| |||||||||||||||||||| |||||| |||||| ||||| |||| | Sbjct: 128 cggatcctcgagtcctacaccatcaagggctccgacaaagtcatcaagcctggggactgt 187 Query: 229 gtgctcatgaaggcgcccgactcatcaaagcctccatatgtggccaaga-ttgaggaaat 287 ||||| |||| ||| | || |||||||||| || ||||||| ||||| |||||| || Sbjct: 188 gtgctaatgagggcatctgatacatcaaagccaccctatgtgg-caagagttgaggctat 246 Query: 288 cgaggcagcaggacctcggggcgcaaatgtcaaggttaaagtgcggtggtactaccggcc 347 ||||| ||||| | || ||| ||||||| | || |||||||||||||| ||||| Sbjct: 247 tgaggctgcagggtcacgaggcacaaatgtgagagtacgggtgcggtggtactatcggcc 306 Query: 348 agaagagtctattggtgggcggaggccattccatggcgaanaggaggtgttcctctccga 407 ||| ||||| || ||||| || | ||||| ||||| | | |||||||||||||| || Sbjct: 307 agaggagtccatgggtggaaggcgtccatttcatggtgccaaagaggtgttcctctcgga 366 Query: 408 ccaccaagatgtgcagagtgctgacaccatagagtggcagtgcaatgtctacagcttccg 467 ||| | || || ||||||||||||||||||||| | ||||||| || |||||||||| Sbjct: 367 tcactatgacgtacagagtgctgacaccatagagggaaagtgcaacgttcacagcttccg 426
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 73.8 bits (37), Expect = 5e-10 Identities = 114/140 (81%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||| |||||||| ||||| || ||||| || | ||||| ||||| | Sbjct: 4641422 gtgcggtggtactatcggccagaggagtccatgggtggaaggcgtccatttcatggtgcc 4641481 Query: 388 naggaggtgttcctctccgaccaccaagatgtgcagagtgctgacaccatagagtggcag 447 | |||||||||||||| || ||| | || || ||||||||||||||||||||| | || Sbjct: 4641482 aaagaggtgttcctctcggatcactatgacgtacagagtgctgacaccatagagggaaag 4641541 Query: 448 tgcaatgtctacagcttccg 467 ||||| || |||||||||| Sbjct: 4641542 tgcaacgttcacagcttccg 4641561 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Plus Query: 169 cggaccctggagtcctacaccatcaagggatccgac 204 |||| ||| |||||||||||||||||||| |||||| Sbjct: 4638976 cggatcctcgagtcctacaccatcaagggctccgac 4639011 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 acaccagcttgctgctgtcatcct 496 |||||||||||||||||| ||||| Sbjct: 4007452 acaccagcttgctgctgtgatcct 4007429
>dbj|AP003753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_B08 Length = 119212 Score = 73.8 bits (37), Expect = 5e-10 Identities = 114/140 (81%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||| |||||||| ||||| || ||||| || | ||||| ||||| | Sbjct: 106762 gtgcggtggtactatcggccagaggagtccatgggtggaaggcgtccatttcatggtgcc 106821 Query: 388 naggaggtgttcctctccgaccaccaagatgtgcagagtgctgacaccatagagtggcag 447 | |||||||||||||| || ||| | || || ||||||||||||||||||||| | || Sbjct: 106822 aaagaggtgttcctctcggatcactatgacgtacagagtgctgacaccatagagggaaag 106881 Query: 448 tgcaatgtctacagcttccg 467 ||||| || |||||||||| Sbjct: 106882 tgcaacgttcacagcttccg 106901 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Plus Query: 169 cggaccctggagtcctacaccatcaagggatccgac 204 |||| ||| |||||||||||||||||||| |||||| Sbjct: 104316 cggatcctcgagtcctacaccatcaagggctccgac 104351
>dbj|AK101850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069K07, full insert sequence Length = 1154 Score = 73.8 bits (37), Expect = 5e-10 Identities = 236/300 (78%), Gaps = 2/300 (0%) Strand = Plus / Plus Query: 169 cggaccctggagtcctacaccatcaagggatccgacggcgtcatccgccctggagactct 228 |||| ||| |||||||||||||||||||| |||||| |||||| ||||| |||| | Sbjct: 128 cggatcctcgagtcctacaccatcaagggctccgacaaagtcatcaagcctggggactgt 187 Query: 229 gtgctcatgaaggcgcccgactcatcaaagcctccatatgtggccaaga-ttgaggaaat 287 ||||| |||| ||| | || |||||||||| || ||||||| ||||| |||||| || Sbjct: 188 gtgctaatgagggcatctgatacatcaaagccaccctatgtgg-caagagttgaggctat 246 Query: 288 cgaggcagcaggacctcggggcgcaaatgtcaaggttaaagtgcggtggtactaccggcc 347 ||||| ||||| | || ||| ||||||| | || |||||||||||||| ||||| Sbjct: 247 tgaggctgcagggtcacgaggcacaaatgtgagagtacgggtgcggtggtactatcggcc 306 Query: 348 agaagagtctattggtgggcggaggccattccatggcgaanaggaggtgttcctctccga 407 ||| ||||| || ||||| || | ||||| ||||| | | |||||||||||||| || Sbjct: 307 agaggagtccatgggtggaaggcgtccatttcatggtgccaaagaggtgttcctctcgga 366 Query: 408 ccaccaagatgtgcagagtgctgacaccatagagtggcagtgcaatgtctacagcttccg 467 ||| | || || ||||||||||||||||||||| | ||||||| || |||||||||| Sbjct: 367 tcactatgacgtacagagtgctgacaccatagagggaaagtgcaacgttcacagcttccg 426
>dbj|AK061201.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-A12, full insert sequence Length = 1502 Score = 73.8 bits (37), Expect = 5e-10 Identities = 236/300 (78%), Gaps = 2/300 (0%) Strand = Plus / Plus Query: 169 cggaccctggagtcctacaccatcaagggatccgacggcgtcatccgccctggagactct 228 |||| ||| |||||||||||||||||||| |||||| |||||| ||||| |||| | Sbjct: 516 cggatcctcgagtcctacaccatcaagggctccgacaaagtcatcaagcctggggactgt 575 Query: 229 gtgctcatgaaggcgcccgactcatcaaagcctccatatgtggccaaga-ttgaggaaat 287 ||||| |||| ||| | || |||||||||| || ||||||| ||||| |||||| || Sbjct: 576 gtgctaatgagggcatctgatacatcaaagccaccctatgtgg-caagagttgaggctat 634 Query: 288 cgaggcagcaggacctcggggcgcaaatgtcaaggttaaagtgcggtggtactaccggcc 347 ||||| ||||| | || ||| ||||||| | || |||||||||||||| ||||| Sbjct: 635 tgaggctgcagggtcacgaggcacaaatgtgagagtacgggtgcggtggtactatcggcc 694 Query: 348 agaagagtctattggtgggcggaggccattccatggcgaanaggaggtgttcctctccga 407 ||| ||||| || ||||| || | ||||| ||||| | | |||||||||||||| || Sbjct: 695 agaggagtccatgggtggaaggcgtccatttcatggtgccaaagaggtgttcctctcgga 754 Query: 408 ccaccaagatgtgcagagtgctgacaccatagagtggcagtgcaatgtctacagcttccg 467 ||| | || || ||||||||||||||||||||| | ||||||| || |||||||||| Sbjct: 755 tcactatgacgtacagagtgctgacaccatagagggaaagtgcaacgttcacagcttccg 814
>dbj|AP004384.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0506C07 Length = 123451 Score = 73.8 bits (37), Expect = 5e-10 Identities = 114/140 (81%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||| |||||||| ||||| || ||||| || | ||||| ||||| | Sbjct: 48795 gtgcggtggtactatcggccagaggagtccatgggtggaaggcgtccatttcatggtgcc 48854 Query: 388 naggaggtgttcctctccgaccaccaagatgtgcagagtgctgacaccatagagtggcag 447 | |||||||||||||| || ||| | || || ||||||||||||||||||||| | || Sbjct: 48855 aaagaggtgttcctctcggatcactatgacgtacagagtgctgacaccatagagggaaag 48914 Query: 448 tgcaatgtctacagcttccg 467 ||||| || |||||||||| Sbjct: 48915 tgcaacgttcacagcttccg 48934 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Plus Query: 169 cggaccctggagtcctacaccatcaagggatccgac 204 |||| ||| |||||||||||||||||||| |||||| Sbjct: 46349 cggatcctcgagtcctacaccatcaagggctccgac 46384
>ref|XM_450843.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1053 Score = 65.9 bits (33), Expect = 1e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||||||||| || ||||| | || ||| |||||| |||||||||| Sbjct: 255 gtgcggtggtactaccggccggaggagtccaagggcgggaggaggcagttccatggcgcc 314 Query: 388 naggaggtgttcctctccgaccac 411 ||||| ||||||||||||||||| Sbjct: 315 aaggagctgttcctctccgaccac 338
>ref|XM_506665.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0048A13.16 mRNA Length = 1139 Score = 65.9 bits (33), Expect = 1e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||||||||| || ||||| | || ||| |||||| |||||||||| Sbjct: 268 gtgcggtggtactaccggccggaggagtccaagggcgggaggaggcagttccatggcgcc 327 Query: 388 naggaggtgttcctctccgaccac 411 ||||| ||||||||||||||||| Sbjct: 328 aaggagctgttcctctccgaccac 351
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 65.9 bits (33), Expect = 1e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||||||||| || ||||| | || ||| |||||| |||||||||| Sbjct: 13127935 gtgcggtggtactaccggccggaggagtccaagggcgggaggaggcagttccatggcgcc 13127994 Query: 388 naggaggtgttcctctccgaccac 411 ||||| ||||||||||||||||| Sbjct: 13127995 aaggagctgttcctctccgaccac 13128018
>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0048A13 Length = 137680 Score = 65.9 bits (33), Expect = 1e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||||||||| || ||||| | || ||| |||||| |||||||||| Sbjct: 50025 gtgcggtggtactaccggccggaggagtccaagggcgggaggaggcagttccatggcgcc 50084 Query: 388 naggaggtgttcctctccgaccac 411 ||||| ||||||||||||||||| Sbjct: 50085 aaggagctgttcctctccgaccac 50108
>dbj|AK099307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141K03, full insert sequence Length = 1053 Score = 65.9 bits (33), Expect = 1e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||||||||| || ||||| | || ||| |||||| |||||||||| Sbjct: 255 gtgcggtggtactaccggccggaggagtccaagggcgggaggaggcagttccatggcgcc 314 Query: 388 naggaggtgttcctctccgaccac 411 ||||| ||||||||||||||||| Sbjct: 315 aaggagctgttcctctccgaccac 338
>dbj|AK064072.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-G12, full insert sequence Length = 1139 Score = 65.9 bits (33), Expect = 1e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||||||||| || ||||| | || ||| |||||| |||||||||| Sbjct: 268 gtgcggtggtactaccggccggaggagtccaagggcgggaggaggcagttccatggcgcc 327 Query: 388 naggaggtgttcctctccgaccac 411 ||||| ||||||||||||||||| Sbjct: 328 aaggagctgttcctctccgaccac 351
>ref|XM_482453.1| Oryza sativa (japonica cultivar-group), mRNA Length = 810 Score = 58.0 bits (29), Expect = 3e-05 Identities = 70/84 (83%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||||||||| || ||||| | || ||| |||||| |||||||||| Sbjct: 204 gtgcggtggtactaccggcccgaggagtccaagggcgggaggaggcagttccatggcgcc 263 Query: 388 naggaggtgttcctctccgaccac 411 ||||| | ||||||||||||||| Sbjct: 264 aaggagctcttcctctccgaccac 287
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 58.0 bits (29), Expect = 3e-05 Identities = 70/84 (83%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||||||||| || ||||| | || ||| |||||| |||||||||| Sbjct: 20197824 gtgcggtggtactaccggcccgaggagtccaagggcgggaggaggcagttccatggcgcc 20197883 Query: 388 naggaggtgttcctctccgaccac 411 ||||| | ||||||||||||||| Sbjct: 20197884 aaggagctcttcctctccgaccac 20197907
>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0077M12 Length = 145337 Score = 58.0 bits (29), Expect = 3e-05 Identities = 70/84 (83%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||||||||| || ||||| | || ||| |||||| |||||||||| Sbjct: 63610 gtgcggtggtactaccggcccgaggagtccaagggcgggaggaggcagttccatggcgcc 63669 Query: 388 naggaggtgttcctctccgaccac 411 ||||| | ||||||||||||||| Sbjct: 63670 aaggagctcttcctctccgaccac 63693
>dbj|AK064578.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-E10, full insert sequence Length = 810 Score = 58.0 bits (29), Expect = 3e-05 Identities = 70/84 (83%) Strand = Plus / Plus Query: 328 gtgcggtggtactaccggccagaagagtctattggtgggcggaggccattccatggcgaa 387 |||||||||||||||||||| || ||||| | || ||| |||||| |||||||||| Sbjct: 204 gtgcggtggtactaccggcccgaggagtccaagggcgggaggaggcagttccatggcgcc 263 Query: 388 naggaggtgttcctctccgaccac 411 ||||| | ||||||||||||||| Sbjct: 264 aaggagctcttcctctccgaccac 287
>ref|XM_476807.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2724 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 acaccagcttgctgctgtcatcct 496 |||||||||||||||||| ||||| Sbjct: 2539 acaccagcttgctgctgtgatcct 2516
>gb|AC087397.10| Homo sapiens chromosome 18, clone RP11-594P16, complete sequence Length = 185912 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 cttgctgctgtcatcctgag 499 |||||||||||||||||||| Sbjct: 15625 cttgctgctgtcatcctgag 15606
>gb|AC104985.3| Homo sapiens chromosome 18, clone RP11-379L18, complete sequence Length = 172187 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 cttgctgctgtcatcctgag 499 |||||||||||||||||||| Sbjct: 16676 cttgctgctgtcatcctgag 16695
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cgccgcggacgccgcgccgg 171 |||||||||||||||||||| Sbjct: 2770172 cgccgcggacgccgcgccgg 2770191
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 cgccggggaagtcgccgcggacgc 163 |||||| ||||||||||||||||| Sbjct: 2563696 cgccggcgaagtcgccgcggacgc 2563719
>dbj|AP003843.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1656_E11 Length = 116211 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 acaccagcttgctgctgtcatcct 496 |||||||||||||||||| ||||| Sbjct: 110178 acaccagcttgctgctgtgatcct 110155
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534H07 Length = 144689 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 acaccagcttgctgctgtcatcct 496 |||||||||||||||||| ||||| Sbjct: 310 acaccagcttgctgctgtgatcct 287
>gb|AC121107.19| Mus musculus chromosome 1, clone RP24-240P15, complete sequence Length = 155435 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 aggaaatcgaggcagcagga 300 |||||||||||||||||||| Sbjct: 139868 aggaaatcgaggcagcagga 139887 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,490,237 Number of Sequences: 3902068 Number of extensions: 2490237 Number of successful extensions: 43062 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42762 Number of HSP's gapped (non-prelim): 291 length of query: 508 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 486 effective length of database: 17,147,199,772 effective search space: 8333539089192 effective search space used: 8333539089192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
