ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast63a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY106456.1| Zea mays PCO087051 mRNA sequence 434 e-118
2ref|XM_469533.1| Oryza sativa (japonica cultivar-group), mRNA 377 e-101
3dbj|AK071307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 377 e-101
4dbj|AK058713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 361 1e-96
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 192 8e-46
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 192 8e-46
7gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 geno... 192 8e-46
8dbj|AK072556.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 7e-34
9emb|CT009535.6| M.truncatula DNA sequence from clone MTH2-68D12 ... 74 5e-10
10ref|NM_123110.2| Arabidopsis thaliana EMB1467; NADH dehydrogenas... 70 8e-09
11ref|NM_180772.1| Arabidopsis thaliana EMB1467; NADH dehydrogenas... 70 8e-09
12gb|BT001090.1| Arabidopsis thaliana At4g37510/F6G17_160 mRNA, co... 70 8e-09
13gb|AY056140.1| Arabidopsis thaliana putative NADH dehydrogenase ... 70 8e-09
14gb|AY128304.1| Arabidopsis thaliana AT4g37510/F6G17_160 mRNA, co... 70 8e-09
15emb|BX831070.1|CNS09YQ6 Arabidopsis thaliana Full-length cDNA Co... 70 8e-09
16emb|X85808.1|ST76CISUB S.tuberosum mRNA for 76 kDa mitochondrial... 68 3e-08
17dbj|AB025630.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 60 7e-06
18gb|AE002105.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 42 1.7
19gb|AC108724.4| Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cance... 42 1.7
20gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, comp... 42 1.7
21gb|AC010328.4| Homo sapiens chromosome 19 clone CITB-E1_2620I22,... 42 1.7
22gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, ... 42 1.7
23emb|AL592170.21| Human DNA sequence from clone RP11-298A19 on ch... 42 1.7
24emb|CR391917.19| Zebrafish DNA sequence from clone DKEY-97O8 in ... 42 1.7
25emb|AL935287.15| Zebrafish DNA sequence from clone CH211-280O3, ... 42 1.7
26ref|XM_588709.2| PREDICTED: Bos taurus similar to kelch-like 20 ... 40 6.8
27ref|XM_757461.1| Ustilago maydis 521 hypothetical protein (UM064... 40 6.8
28emb|AL590114.14| Human DNA sequence from clone RP11-318H18 on ch... 40 6.8
29gb|AC104439.2| Homo sapiens chromosome 3 clone RP11-793E15, comp... 40 6.8
30gb|AC093865.2| Homo sapiens BAC clone RP11-560C24 from 2, comple... 40 6.8
31gb|AC069394.6| Homo sapiens BAC clone RP11-731F1 from 2, complet... 40 6.8
32gb|AC138069.3| Homo sapiens chromosome 3 clone RP13-546I2, compl... 40 6.8

>gb|AY106456.1| Zea mays PCO087051 mRNA sequence
          Length = 1356

 Score =  434 bits (219), Expect = e-118
 Identities = 410/471 (87%), Gaps = 2/471 (0%)
 Strand = Plus / Plus

                                                                       
Query: 32  aatgggttccgataaggtgctctgtgagggaaatggtccgaatccaccagcagatattcg 91
           ||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| | ||
Sbjct: 16  aatgggttcagataaggtgctgtgtgagggaaatggtcctaatcctccagcagatctgcg 75

                                                                       
Query: 92  atcaaactacctaatgaatactagcattgctggtcttgagaaagccgatgtcttcctttt 151
           ||| ||||||||||||||||| ||||||||||| ||||| || || ||||||||||||||
Sbjct: 76  atctaactacctaatgaatacgagcattgctgggcttgaaaaggctgatgtcttcctttt 135

                                                                       
Query: 152 ggttggtacgcagcctagggtggaagctgctatggtgaatgcaaggattcagaagactgt 211
           |||||| || ||||| |||||||||||||||||||| || || ||||||| |||||||||
Sbjct: 136 ggttggcactcagccaagggtggaagctgctatggttaacgccaggattcggaagactgt 195

                                                                       
Query: 212 tagagcaacacaagcaaaggtgggctacattggtcctctggcagacttcaactatgacac 271
           || |||||||||||||||||| || |||||||||||||  || ||||| |||||||||  
Sbjct: 196 taaagcaacacaagcaaaggttgggtacattggtcctccagctgactttaactatgacca 255

                                                                       
Query: 272 tcagcatcttggcacagggccagagacccttgttgagatagctgagggccggcatccttt 331
           | | |||||||||||||| ||| ||||||||||||||||  | ||||| || ||||||||
Sbjct: 256 tgaacatcttggcacaggaccacagacccttgttgagattacagagggtcgtcatccttt 315

                                                                       
Query: 332 ctgctcaatactaaagtctgcaaagaacccagtaatcatcgctggagctgggttatttga 391
           ||| ||| ||||  | ||||| |||||||| || ||||| ||||||||||| ||||||||
Sbjct: 316 ctgttcagtactgcaatctgccaagaaccctgtcatcattgctggagctggattatttga 375

                                                                       
Query: 392 acgggaagaccaaggtgctgtgttctcaacaattgaaactgtagccaagaaattcaatgt 451
           |||||||||||||| |||  | |||||||  ||||| |||||||||||||  ||||||||
Sbjct: 376 acgggaagaccaagatgccctattctcaatgattgagactgtagccaagaggttcaatgt 435

                                                              
Query: 452 gacgagaccagactggaatggcc-tcatgtcctattgct-catgctgcaca 500
           ||| ||||||||||||||||||| | ||||||| ||||| |||||||||||
Sbjct: 436 gactagaccagactggaatggccttaatgtcctgttgctccatgctgcaca 486



to top

>ref|XM_469533.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2486

 Score =  377 bits (190), Expect = e-101
 Identities = 426/502 (84%), Gaps = 2/502 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60
            |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 1181 ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 1240

                                                                        
Query: 61   gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120
            |||||||||| | ||| || || ||| | || || |||||||||||||||||||||||||
Sbjct: 1241 gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 1300

                                                                        
Query: 121  ctggtcttgagaaagccgatgtcttccttttggttggtacgcagcctagggtggaagctg 180
            |||| ||||||||||| ||||||||||||||||||||||| ||||| || || |||||||
Sbjct: 1301 ctgggcttgagaaagctgatgtcttccttttggttggtacacagccaagagttgaagctg 1360

                                                                        
Query: 181  ctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtgggctaca 240
            ||||||| |||||||| || | ||||||||||||||| |||||||| ||||| |  || |
Sbjct: 1361 ctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggttgcttata 1420

                                                                        
Query: 241  ttggtcctctggcagacttcaactatgacactcagcatcttggcacagggccagagaccc 300
            |||| ||||   | |||||||||||||||  | ||||||||||||| || ||| | ||||
Sbjct: 1421 ttggacctccaactgacttcaactatgaccatgagcatcttggcactggaccacaaaccc 1480

                                                                        
Query: 301  ttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgcaaagaacc 360
            |||||||||| || ||||| |||||||| ||||| ||||  ||  ||||||| ||||| |
Sbjct: 1481 ttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgctaagaatc 1540

                                                                        
Query: 361  cagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtgttctcaa 420
            | || ||||| ||||| || ||||||||||| ||||||||||||| |||  | |||||||
Sbjct: 1541 ctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgcccttttctcaa 1600

                                                                        
Query: 421  caattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tggcctcatg 479
            | || || ||||||||||| ||||||||||||   ||||||||||||||  ||| | |||
Sbjct: 1601 cgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacgggcttaatg 1660

                                  
Query: 480  tcctattgct-catgctgcaca 500
            | |||||||| |||||||||||
Sbjct: 1661 ttctattgctgcatgctgcaca 1682



to top

>dbj|AK071307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M21, full
            insert sequence
          Length = 2518

 Score =  377 bits (190), Expect = e-101
 Identities = 426/502 (84%), Gaps = 2/502 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60
            |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 1269 ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 1328

                                                                        
Query: 61   gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120
            |||||||||| | ||| || || ||| | || || |||||||||||||||||||||||||
Sbjct: 1329 gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 1388

                                                                        
Query: 121  ctggtcttgagaaagccgatgtcttccttttggttggtacgcagcctagggtggaagctg 180
            |||| ||||||||||| ||||||||||||||||||||||| ||||| || || |||||||
Sbjct: 1389 ctgggcttgagaaagctgatgtcttccttttggttggtacacagccaagagttgaagctg 1448

                                                                        
Query: 181  ctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtgggctaca 240
            ||||||| |||||||| || | ||||||||||||||| |||||||| ||||| |  || |
Sbjct: 1449 ctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggttgcttata 1508

                                                                        
Query: 241  ttggtcctctggcagacttcaactatgacactcagcatcttggcacagggccagagaccc 300
            |||| ||||   | |||||||||||||||  | ||||||||||||| || ||| | ||||
Sbjct: 1509 ttggacctccaactgacttcaactatgaccatgagcatcttggcactggaccacaaaccc 1568

                                                                        
Query: 301  ttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgcaaagaacc 360
            |||||||||| || ||||| |||||||| ||||| ||||  ||  ||||||| ||||| |
Sbjct: 1569 ttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgctaagaatc 1628

                                                                        
Query: 361  cagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtgttctcaa 420
            | || ||||| ||||| || ||||||||||| ||||||||||||| |||  | |||||||
Sbjct: 1629 ctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgcccttttctcaa 1688

                                                                        
Query: 421  caattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tggcctcatg 479
            | || || ||||||||||| ||||||||||||   ||||||||||||||  ||| | |||
Sbjct: 1689 cgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacgggcttaatg 1748

                                  
Query: 480  tcctattgct-catgctgcaca 500
            | |||||||| |||||||||||
Sbjct: 1749 ttctattgctgcatgctgcaca 1770



to top

>dbj|AK058713.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D09, full
           insert sequence
          Length = 1323

 Score =  361 bits (182), Expect = 1e-96
 Identities = 424/502 (84%), Gaps = 2/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60
           |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 13  ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 72

                                                                       
Query: 61  gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120
           |||||||||| | ||| || || ||| | || || |||||||||||||||||||||||||
Sbjct: 73  gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 132

                                                                       
Query: 121 ctggtcttgagaaagccgatgtcttccttttggttggtacgcagcctagggtggaagctg 180
           |||| ||||||||||| ||||||||||||||||||||||| ||||| || || |||||||
Sbjct: 133 ctgggcttgagaaagctgatgtcttccttttggttggtacacagccaagagttgaagctg 192

                                                                       
Query: 181 ctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtgggctaca 240
           ||||||| |||||||| || | ||||||||||||||| |||||||| ||||| |  || |
Sbjct: 193 ctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggttgcttata 252

                                                                       
Query: 241 ttggtcctctggcagacttcaactatgacactcagcatcttggcacagggccagagaccc 300
           |||| ||||   | |||||||||||||||  | ||||||||||||| || ||| | ||||
Sbjct: 253 ttggacctccaactgacttcaactatgaccatgagcatcttggcactggaccacaaaccc 312

                                                                       
Query: 301 ttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgcaaagaacc 360
           |||||||||| || ||||| |||||||| ||||| ||||  ||  ||||||| ||||| |
Sbjct: 313 ttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgctaagaatc 372

                                                                       
Query: 361 cagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtgttctcaa 420
           | || ||||| ||||| || ||||||| ||| ||||| ||||||| |||  | |||||||
Sbjct: 373 ctgtcatcattgctggggccgggttatctgaccgggaggaccaagatgcccttttctcaa 432

                                                                       
Query: 421 caattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tggcctcatg 479
           | || || ||||||||||| ||||||||||||   ||||||||||||||  ||| | |||
Sbjct: 433 cgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacgggcttaatg 492

                                 
Query: 480 tcctattgct-catgctgcaca 500
           | |||||||| |||||||||||
Sbjct: 493 ttctattgctgcatgctgcaca 514



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  192 bits (97), Expect = 8e-46
 Identities = 273/329 (82%), Gaps = 2/329 (0%)
 Strand = Plus / Minus

                                                                            
Query: 174      gaagctgctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtg 233
                |||||||||||||| |||||||| || | ||||||||||||||| |||||||| ||||| 
Sbjct: 28562013 gaagctgctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggtt 28561954

                                                                            
Query: 234      ggctacattggtcctctggcagacttcaactatgacactcagcatcttggcacagggcca 293
                |  || ||||| ||||   | |||||||||||||||  | ||||||||||||| || |||
Sbjct: 28561953 gcttatattggacctccaactgacttcaactatgaccatgagcatcttggcactggacca 28561894

                                                                            
Query: 294      gagacccttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgca 353
                 | |||||||||||||| || ||||| |||||||| ||||| ||||  ||  ||||||| 
Sbjct: 28561893 caaacccttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgct 28561834

                                                                            
Query: 354      aagaacccagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtg 413
                ||||| || || ||||| ||||| || ||||||||||| ||||||||||||| |||  | 
Sbjct: 28561833 aagaatcctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgccctt 28561774

                                                                            
Query: 414      ttctcaacaattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tgg 472
                |||||||| || || ||||||||||| ||||||||||||   ||||||||||||||  ||
Sbjct: 28561773 ttctcaacgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacggg 28561714

                                             
Query: 473      cctcatgtcctattgct-catgctgcaca 500
                | | |||| |||||||| |||||||||||
Sbjct: 28561713 cttaatgttctattgctgcatgctgcaca 28561685



 Score =  190 bits (96), Expect = 3e-45
 Identities = 144/160 (90%)
 Strand = Plus / Minus

                                                                            
Query: 1        ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60
                |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 28562729 ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 28562670

                                                                            
Query: 61       gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120
                |||||||||| | ||| || || ||| | || || |||||||||||||||||||||||||
Sbjct: 28562669 gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 28562610

                                                        
Query: 121      ctggtcttgagaaagccgatgtcttccttttggttggtac 160
                |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 28562609 ctgggcttgagaaagctgatgtcttccttttggttggtac 28562570



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  192 bits (97), Expect = 8e-46
 Identities = 273/329 (82%), Gaps = 2/329 (0%)
 Strand = Plus / Minus

                                                                            
Query: 174      gaagctgctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtg 233
                |||||||||||||| |||||||| || | ||||||||||||||| |||||||| ||||| 
Sbjct: 28653337 gaagctgctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggtt 28653278

                                                                            
Query: 234      ggctacattggtcctctggcagacttcaactatgacactcagcatcttggcacagggcca 293
                |  || ||||| ||||   | |||||||||||||||  | ||||||||||||| || |||
Sbjct: 28653277 gcttatattggacctccaactgacttcaactatgaccatgagcatcttggcactggacca 28653218

                                                                            
Query: 294      gagacccttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgca 353
                 | |||||||||||||| || ||||| |||||||| ||||| ||||  ||  ||||||| 
Sbjct: 28653217 caaacccttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgct 28653158

                                                                            
Query: 354      aagaacccagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtg 413
                ||||| || || ||||| ||||| || ||||||||||| ||||||||||||| |||  | 
Sbjct: 28653157 aagaatcctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgccctt 28653098

                                                                            
Query: 414      ttctcaacaattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tgg 472
                |||||||| || || ||||||||||| ||||||||||||   ||||||||||||||  ||
Sbjct: 28653097 ttctcaacgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacggg 28653038

                                             
Query: 473      cctcatgtcctattgct-catgctgcaca 500
                | | |||| |||||||| |||||||||||
Sbjct: 28653037 cttaatgttctattgctgcatgctgcaca 28653009



 Score =  190 bits (96), Expect = 3e-45
 Identities = 144/160 (90%)
 Strand = Plus / Minus

                                                                            
Query: 1        ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60
                |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 28654053 ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 28653994

                                                                            
Query: 61       gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120
                |||||||||| | ||| || || ||| | || || |||||||||||||||||||||||||
Sbjct: 28653993 gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 28653934

                                                        
Query: 121      ctggtcttgagaaagccgatgtcttccttttggttggtac 160
                |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 28653933 ctgggcttgagaaagctgatgtcttccttttggttggtac 28653894



to top

>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete
              sequence
          Length = 158839

 Score =  192 bits (97), Expect = 8e-46
 Identities = 273/329 (82%), Gaps = 2/329 (0%)
 Strand = Plus / Plus

                                                                          
Query: 174    gaagctgctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtg 233
              |||||||||||||| |||||||| || | ||||||||||||||| |||||||| ||||| 
Sbjct: 136883 gaagctgctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggtt 136942

                                                                          
Query: 234    ggctacattggtcctctggcagacttcaactatgacactcagcatcttggcacagggcca 293
              |  || ||||| ||||   | |||||||||||||||  | ||||||||||||| || |||
Sbjct: 136943 gcttatattggacctccaactgacttcaactatgaccatgagcatcttggcactggacca 137002

                                                                          
Query: 294    gagacccttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgca 353
               | |||||||||||||| || ||||| |||||||| ||||| ||||  ||  ||||||| 
Sbjct: 137003 caaacccttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgct 137062

                                                                          
Query: 354    aagaacccagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtg 413
              ||||| || || ||||| ||||| || ||||||||||| ||||||||||||| |||  | 
Sbjct: 137063 aagaatcctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgccctt 137122

                                                                          
Query: 414    ttctcaacaattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tgg 472
              |||||||| || || ||||||||||| ||||||||||||   ||||||||||||||  ||
Sbjct: 137123 ttctcaacgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacggg 137182

                                           
Query: 473    cctcatgtcctattgct-catgctgcaca 500
              | | |||| |||||||| |||||||||||
Sbjct: 137183 cttaatgttctattgctgcatgctgcaca 137211



 Score =  190 bits (96), Expect = 3e-45
 Identities = 144/160 (90%)
 Strand = Plus / Plus

                                                                          
Query: 1      ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60
              |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 136167 ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 136226

                                                                          
Query: 61     gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120
              |||||||||| | ||| || || ||| | || || |||||||||||||||||||||||||
Sbjct: 136227 gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 136286

                                                      
Query: 121    ctggtcttgagaaagccgatgtcttccttttggttggtac 160
              |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 136287 ctgggcttgagaaagctgatgtcttccttttggttggtac 136326



to top

>dbj|AK072556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130E21, full
           insert sequence
          Length = 1107

 Score =  153 bits (77), Expect = 7e-34
 Identities = 241/293 (82%), Gaps = 2/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 210 gttagagcaacacaagcaaaggtgggctacattggtcctctggcagacttcaactatgac 269
           |||||||| |||||||| ||||| |  || ||||| ||||   | |||||||||||||||
Sbjct: 1   gttagagcgacacaagctaaggttgcttatattggacctccaactgacttcaactatgac 60

                                                                       
Query: 270 actcagcatcttggcacagggccagagacccttgttgagatagctgagggccggcatcct 329
             | ||||||||||||| || ||| | |||||||||||||| || ||||| |||||||| 
Sbjct: 61  catgagcatcttggcactggaccacaaacccttgttgagattgcagagggtcggcatccc 120

                                                                       
Query: 330 ttctgctcaatactaaagtctgcaaagaacccagtaatcatcgctggagctgggttattt 389
           ||||| ||||  ||  ||||||| ||||| || || ||||| ||||| || |||||||||
Sbjct: 121 ttctgttcaactctgcagtctgctaagaatcctgtcatcattgctggggccgggttattt 180

                                                                       
Query: 390 gaacgggaagaccaaggtgctgtgttctcaacaattgaaactgtagccaagaaattcaat 449
           || ||||||||||||| |||  | |||||||| || || ||||||||||| |||||||||
Sbjct: 181 gaccgggaagaccaagatgcccttttctcaacgatagagactgtagccaaaaaattcaat 240

                                                                
Query: 450 gtgacgagaccagactggaa-tggcctcatgtcctattgct-catgctgcaca 500
           |||   ||||||||||||||  ||| | |||| |||||||| |||||||||||
Sbjct: 241 gtggttagaccagactggaacgggcttaatgttctattgctgcatgctgcaca 293



to top

>emb|CT009535.6| M.truncatula DNA sequence from clone MTH2-68D12 on chromosome 3,
             complete sequence
          Length = 82241

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                  
Query: 105   atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttgg 157
             |||||||||||||||||||||||||||||||| ||||  ||||| ||||||||
Sbjct: 37494 atgaatactagcattgctggtcttgagaaagcagatgctttcctgttggttgg 37442



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 169   gggtggaagctgctatggtgaatgc 193
             ||||||||||||||||||| |||||
Sbjct: 37118 gggtggaagctgctatggttaatgc 37094



to top

>ref|NM_123110.2| Arabidopsis thaliana EMB1467; NADH dehydrogenase (ubiquinone)/ NADH
            dehydrogenase/ electron transporter/ iron ion binding /
            oxidoreductase AT5G37510 (EMB1467) transcript variant
            AT5G37510.2 mRNA, complete cds
          Length = 2527

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                        
Query: 105  atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164
            ||||| ||||||||   ||| ||||| || |||||| |||||||| |  | ||||| |||
Sbjct: 1359 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1418

                                               
Query: 165  cctagggtggaagctgctatggtgaatgcaaggat 199
            ||||||||||||||||| ||||||||||| |||||
Sbjct: 1419 cctagggtggaagctgcaatggtgaatgctaggat 1453



to top

>ref|NM_180772.1| Arabidopsis thaliana EMB1467; NADH dehydrogenase (ubiquinone)/ NADH
            dehydrogenase/ electron transporter/ iron ion binding /
            oxidoreductase AT5G37510 (EMB1467) transcript variant
            AT5G37510.1 mRNA, complete cds
          Length = 2623

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                        
Query: 105  atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164
            ||||| ||||||||   ||| ||||| || |||||| |||||||| |  | ||||| |||
Sbjct: 1359 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1418

                                               
Query: 165  cctagggtggaagctgctatggtgaatgcaaggat 199
            ||||||||||||||||| ||||||||||| |||||
Sbjct: 1419 cctagggtggaagctgcaatggtgaatgctaggat 1453



to top

>gb|BT001090.1| Arabidopsis thaliana At4g37510/F6G17_160 mRNA, complete cds
          Length = 2040

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                        
Query: 105  atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164
            ||||| ||||||||   ||| ||||| || |||||| |||||||| |  | ||||| |||
Sbjct: 1279 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1338

                                               
Query: 165  cctagggtggaagctgctatggtgaatgcaaggat 199
            ||||||||||||||||| ||||||||||| |||||
Sbjct: 1339 cctagggtggaagctgcaatggtgaatgctaggat 1373



to top

>gb|AY056140.1| Arabidopsis thaliana putative NADH dehydrogenase (ubiquinone) 76K
            chain precursor (At5g37510) mRNA, complete cds
          Length = 2526

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                        
Query: 105  atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164
            ||||| ||||||||   ||| ||||| || |||||| |||||||| |  | ||||| |||
Sbjct: 1331 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1390

                                               
Query: 165  cctagggtggaagctgctatggtgaatgcaaggat 199
            ||||||||||||||||| ||||||||||| |||||
Sbjct: 1391 cctagggtggaagctgcaatggtgaatgctaggat 1425



to top

>gb|AY128304.1| Arabidopsis thaliana AT4g37510/F6G17_160 mRNA, complete cds
          Length = 2473

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                        
Query: 105  atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164
            ||||| ||||||||   ||| ||||| || |||||| |||||||| |  | ||||| |||
Sbjct: 1349 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1408

                                               
Query: 165  cctagggtggaagctgctatggtgaatgcaaggat 199
            ||||||||||||||||| ||||||||||| |||||
Sbjct: 1409 cctagggtggaagctgcaatggtgaatgctaggat 1443



to top

>emb|BX831070.1|CNS09YQ6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS55ZD08 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2528

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                        
Query: 105  atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164
            ||||| ||||||||   ||| ||||| || |||||| |||||||| |  | ||||| |||
Sbjct: 1329 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1388

                                               
Query: 165  cctagggtggaagctgctatggtgaatgcaaggat 199
            ||||||||||||||||| ||||||||||| |||||
Sbjct: 1389 cctagggtggaagctgcaatggtgaatgctaggat 1423



to top

>emb|X85808.1|ST76CISUB S.tuberosum mRNA for 76 kDa mitochondrial complex I subunit
          Length = 2599

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 129  gagaaagccgatgtcttccttttggttggtacgcagcctagggtggaagctgctatggtg 188
            |||||||| ||||  ||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 1327 gagaaagcagatgctttcctcttggttggaacccagccaagggttgaagctgctatggtg 1386

                          
Query: 189  aatgcaaggattca 202
            ||||| || |||||
Sbjct: 1387 aatgccagaattca 1400



to top

>dbj|AB025630.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA22
          Length = 51436

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 162   cagcctagggtggaagctgctatggtgaatgcaaggat 199
             |||||||||||||||||||| ||||||||||| |||||
Sbjct: 31589 cagcctagggtggaagctgcaatggtgaatgctaggat 31626



to top

>gb|AE002105.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 6 of 59 of the
            complete genome
          Length = 11157

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 13   tgaaagattttgttaataaaa 33
            |||||||||||||||||||||
Sbjct: 6721 tgaaagattttgttaataaaa 6741



to top

>gb|AC108724.4| Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 186773

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 413   gttctcaacaattgaaactgt 433
             |||||||||||||||||||||
Sbjct: 53620 gttctcaacaattgaaactgt 53600



to top

>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence
          Length = 191144

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 413    gttctcaacaattgaaactgt 433
              |||||||||||||||||||||
Sbjct: 135107 gttctcaacaattgaaactgt 135087



to top

>gb|AC010328.4| Homo sapiens chromosome 19 clone CITB-E1_2620I22, complete sequence
          Length = 196686

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   agggtggaagctgctatggtg 188
             |||||||||||||||||||||
Sbjct: 51234 agggtggaagctgctatggtg 51254



to top

>gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, complete sequence
          Length = 82884

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    ctgaaagattttgttaataaa 32
             |||||||||||||||||||||
Sbjct: 80711 ctgaaagattttgttaataaa 80691



to top

>emb|AL592170.21| Human DNA sequence from clone RP11-298A19 on chromosome 22, complete
             sequence
          Length = 186861

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 413   gttctcaacaattgaaactgt 433
             |||||||||||||||||||||
Sbjct: 53825 gttctcaacaattgaaactgt 53805



to top

>emb|CR391917.19| Zebrafish DNA sequence from clone DKEY-97O8 in linkage group 1, complete
              sequence
          Length = 184212

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 453    acgagaccagactggaatggcctca 477
              |||||||||||||||||||| ||||
Sbjct: 163308 acgagaccagactggaatggtctca 163332



to top

>emb|AL935287.15| Zebrafish DNA sequence from clone CH211-280O3, complete sequence
          Length = 174293

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 453    acgagaccagactggaatggcctca 477
              |||||||||||||||||||| ||||
Sbjct: 101336 acgagaccagactggaatggtctca 101312



to top

>ref|XM_588709.2| PREDICTED: Bos taurus similar to kelch-like 20 (LOC511387), mRNA
          Length = 1812

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   aagattttgttaataaaatg 35
            ||||||||||||||||||||
Sbjct: 1411 aagattttgttaataaaatg 1392



to top

>ref|XM_757461.1| Ustilago maydis 521 hypothetical protein (UM06407.1) partial mRNA
          Length = 2769

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 128  tgagaaagccgatgtcttcctttt 151
            ||||||||||||| ||||||||||
Sbjct: 2167 tgagaaagccgatttcttcctttt 2144



to top

>emb|AL590114.14| Human DNA sequence from clone RP11-318H18 on chromosome X, complete
             sequence
          Length = 23809

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   gaaactgtagccaagaaatt 445
             ||||||||||||||||||||
Sbjct: 20140 gaaactgtagccaagaaatt 20159



to top

>gb|AC104439.2| Homo sapiens chromosome 3 clone RP11-793E15, complete sequence
          Length = 197279

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 241    ttggtcctctggcagacttcaact 264
              |||||||||||||||||| |||||
Sbjct: 140791 ttggtcctctggcagactccaact 140768



to top

>gb|AC093865.2| Homo sapiens BAC clone RP11-560C24 from 2, complete sequence
          Length = 186218

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 198    attcagaagactgttagagcaaca 221
              ||||||||| ||||||||||||||
Sbjct: 145508 attcagaagcctgttagagcaaca 145485



to top

>gb|AC069394.6| Homo sapiens BAC clone RP11-731F1 from 2, complete sequence
          Length = 175352

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   accaaggtgctgtgttctca 419
             ||||||||||||||||||||
Sbjct: 72476 accaaggtgctgtgttctca 72457



to top

>gb|AC138069.3| Homo sapiens chromosome 3 clone RP13-546I2, complete sequence
          Length = 177334

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 241   ttggtcctctggcagacttcaact 264
             |||||||||||||||||| |||||
Sbjct: 38987 ttggtcctctggcagactccaact 38964


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,763,795
Number of Sequences: 3902068
Number of extensions: 4763795
Number of successful extensions: 80928
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80849
Number of HSP's gapped (non-prelim): 73
length of query: 500
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 478
effective length of database: 17,147,199,772
effective search space: 8196361491016
effective search space used: 8196361491016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top