| Clone Name | bast63a03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106456.1| Zea mays PCO087051 mRNA sequence Length = 1356 Score = 434 bits (219), Expect = e-118 Identities = 410/471 (87%), Gaps = 2/471 (0%) Strand = Plus / Plus Query: 32 aatgggttccgataaggtgctctgtgagggaaatggtccgaatccaccagcagatattcg 91 ||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| | || Sbjct: 16 aatgggttcagataaggtgctgtgtgagggaaatggtcctaatcctccagcagatctgcg 75 Query: 92 atcaaactacctaatgaatactagcattgctggtcttgagaaagccgatgtcttcctttt 151 ||| ||||||||||||||||| ||||||||||| ||||| || || |||||||||||||| Sbjct: 76 atctaactacctaatgaatacgagcattgctgggcttgaaaaggctgatgtcttcctttt 135 Query: 152 ggttggtacgcagcctagggtggaagctgctatggtgaatgcaaggattcagaagactgt 211 |||||| || ||||| |||||||||||||||||||| || || ||||||| ||||||||| Sbjct: 136 ggttggcactcagccaagggtggaagctgctatggttaacgccaggattcggaagactgt 195 Query: 212 tagagcaacacaagcaaaggtgggctacattggtcctctggcagacttcaactatgacac 271 || |||||||||||||||||| || ||||||||||||| || ||||| ||||||||| Sbjct: 196 taaagcaacacaagcaaaggttgggtacattggtcctccagctgactttaactatgacca 255 Query: 272 tcagcatcttggcacagggccagagacccttgttgagatagctgagggccggcatccttt 331 | | |||||||||||||| ||| |||||||||||||||| | ||||| || |||||||| Sbjct: 256 tgaacatcttggcacaggaccacagacccttgttgagattacagagggtcgtcatccttt 315 Query: 332 ctgctcaatactaaagtctgcaaagaacccagtaatcatcgctggagctgggttatttga 391 ||| ||| |||| | ||||| |||||||| || ||||| ||||||||||| |||||||| Sbjct: 316 ctgttcagtactgcaatctgccaagaaccctgtcatcattgctggagctggattatttga 375 Query: 392 acgggaagaccaaggtgctgtgttctcaacaattgaaactgtagccaagaaattcaatgt 451 |||||||||||||| ||| | ||||||| ||||| ||||||||||||| |||||||| Sbjct: 376 acgggaagaccaagatgccctattctcaatgattgagactgtagccaagaggttcaatgt 435 Query: 452 gacgagaccagactggaatggcc-tcatgtcctattgct-catgctgcaca 500 ||| ||||||||||||||||||| | ||||||| ||||| ||||||||||| Sbjct: 436 gactagaccagactggaatggccttaatgtcctgttgctccatgctgcaca 486
>ref|XM_469533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2486 Score = 377 bits (190), Expect = e-101 Identities = 426/502 (84%), Gaps = 2/502 (0%) Strand = Plus / Plus Query: 1 ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60 |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 1181 ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 1240 Query: 61 gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120 |||||||||| | ||| || || ||| | || || ||||||||||||||||||||||||| Sbjct: 1241 gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 1300 Query: 121 ctggtcttgagaaagccgatgtcttccttttggttggtacgcagcctagggtggaagctg 180 |||| ||||||||||| ||||||||||||||||||||||| ||||| || || ||||||| Sbjct: 1301 ctgggcttgagaaagctgatgtcttccttttggttggtacacagccaagagttgaagctg 1360 Query: 181 ctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtgggctaca 240 ||||||| |||||||| || | ||||||||||||||| |||||||| ||||| | || | Sbjct: 1361 ctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggttgcttata 1420 Query: 241 ttggtcctctggcagacttcaactatgacactcagcatcttggcacagggccagagaccc 300 |||| |||| | ||||||||||||||| | ||||||||||||| || ||| | |||| Sbjct: 1421 ttggacctccaactgacttcaactatgaccatgagcatcttggcactggaccacaaaccc 1480 Query: 301 ttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgcaaagaacc 360 |||||||||| || ||||| |||||||| ||||| |||| || ||||||| ||||| | Sbjct: 1481 ttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgctaagaatc 1540 Query: 361 cagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtgttctcaa 420 | || ||||| ||||| || ||||||||||| ||||||||||||| ||| | ||||||| Sbjct: 1541 ctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgcccttttctcaa 1600 Query: 421 caattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tggcctcatg 479 | || || ||||||||||| |||||||||||| |||||||||||||| ||| | ||| Sbjct: 1601 cgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacgggcttaatg 1660 Query: 480 tcctattgct-catgctgcaca 500 | |||||||| ||||||||||| Sbjct: 1661 ttctattgctgcatgctgcaca 1682
>dbj|AK071307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M21, full insert sequence Length = 2518 Score = 377 bits (190), Expect = e-101 Identities = 426/502 (84%), Gaps = 2/502 (0%) Strand = Plus / Plus Query: 1 ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60 |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 1269 ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 1328 Query: 61 gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120 |||||||||| | ||| || || ||| | || || ||||||||||||||||||||||||| Sbjct: 1329 gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 1388 Query: 121 ctggtcttgagaaagccgatgtcttccttttggttggtacgcagcctagggtggaagctg 180 |||| ||||||||||| ||||||||||||||||||||||| ||||| || || ||||||| Sbjct: 1389 ctgggcttgagaaagctgatgtcttccttttggttggtacacagccaagagttgaagctg 1448 Query: 181 ctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtgggctaca 240 ||||||| |||||||| || | ||||||||||||||| |||||||| ||||| | || | Sbjct: 1449 ctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggttgcttata 1508 Query: 241 ttggtcctctggcagacttcaactatgacactcagcatcttggcacagggccagagaccc 300 |||| |||| | ||||||||||||||| | ||||||||||||| || ||| | |||| Sbjct: 1509 ttggacctccaactgacttcaactatgaccatgagcatcttggcactggaccacaaaccc 1568 Query: 301 ttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgcaaagaacc 360 |||||||||| || ||||| |||||||| ||||| |||| || ||||||| ||||| | Sbjct: 1569 ttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgctaagaatc 1628 Query: 361 cagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtgttctcaa 420 | || ||||| ||||| || ||||||||||| ||||||||||||| ||| | ||||||| Sbjct: 1629 ctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgcccttttctcaa 1688 Query: 421 caattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tggcctcatg 479 | || || ||||||||||| |||||||||||| |||||||||||||| ||| | ||| Sbjct: 1689 cgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacgggcttaatg 1748 Query: 480 tcctattgct-catgctgcaca 500 | |||||||| ||||||||||| Sbjct: 1749 ttctattgctgcatgctgcaca 1770
>dbj|AK058713.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D09, full insert sequence Length = 1323 Score = 361 bits (182), Expect = 1e-96 Identities = 424/502 (84%), Gaps = 2/502 (0%) Strand = Plus / Plus Query: 1 ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60 |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 13 ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 72 Query: 61 gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120 |||||||||| | ||| || || ||| | || || ||||||||||||||||||||||||| Sbjct: 73 gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 132 Query: 121 ctggtcttgagaaagccgatgtcttccttttggttggtacgcagcctagggtggaagctg 180 |||| ||||||||||| ||||||||||||||||||||||| ||||| || || ||||||| Sbjct: 133 ctgggcttgagaaagctgatgtcttccttttggttggtacacagccaagagttgaagctg 192 Query: 181 ctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtgggctaca 240 ||||||| |||||||| || | ||||||||||||||| |||||||| ||||| | || | Sbjct: 193 ctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggttgcttata 252 Query: 241 ttggtcctctggcagacttcaactatgacactcagcatcttggcacagggccagagaccc 300 |||| |||| | ||||||||||||||| | ||||||||||||| || ||| | |||| Sbjct: 253 ttggacctccaactgacttcaactatgaccatgagcatcttggcactggaccacaaaccc 312 Query: 301 ttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgcaaagaacc 360 |||||||||| || ||||| |||||||| ||||| |||| || ||||||| ||||| | Sbjct: 313 ttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgctaagaatc 372 Query: 361 cagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtgttctcaa 420 | || ||||| ||||| || ||||||| ||| ||||| ||||||| ||| | ||||||| Sbjct: 373 ctgtcatcattgctggggccgggttatctgaccgggaggaccaagatgcccttttctcaa 432 Query: 421 caattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tggcctcatg 479 | || || ||||||||||| |||||||||||| |||||||||||||| ||| | ||| Sbjct: 433 cgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacgggcttaatg 492 Query: 480 tcctattgct-catgctgcaca 500 | |||||||| ||||||||||| Sbjct: 493 ttctattgctgcatgctgcaca 514
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 192 bits (97), Expect = 8e-46 Identities = 273/329 (82%), Gaps = 2/329 (0%) Strand = Plus / Minus Query: 174 gaagctgctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtg 233 |||||||||||||| |||||||| || | ||||||||||||||| |||||||| ||||| Sbjct: 28562013 gaagctgctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggtt 28561954 Query: 234 ggctacattggtcctctggcagacttcaactatgacactcagcatcttggcacagggcca 293 | || ||||| |||| | ||||||||||||||| | ||||||||||||| || ||| Sbjct: 28561953 gcttatattggacctccaactgacttcaactatgaccatgagcatcttggcactggacca 28561894 Query: 294 gagacccttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgca 353 | |||||||||||||| || ||||| |||||||| ||||| |||| || ||||||| Sbjct: 28561893 caaacccttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgct 28561834 Query: 354 aagaacccagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtg 413 ||||| || || ||||| ||||| || ||||||||||| ||||||||||||| ||| | Sbjct: 28561833 aagaatcctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgccctt 28561774 Query: 414 ttctcaacaattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tgg 472 |||||||| || || ||||||||||| |||||||||||| |||||||||||||| || Sbjct: 28561773 ttctcaacgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacggg 28561714 Query: 473 cctcatgtcctattgct-catgctgcaca 500 | | |||| |||||||| ||||||||||| Sbjct: 28561713 cttaatgttctattgctgcatgctgcaca 28561685 Score = 190 bits (96), Expect = 3e-45 Identities = 144/160 (90%) Strand = Plus / Minus Query: 1 ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60 |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 28562729 ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 28562670 Query: 61 gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120 |||||||||| | ||| || || ||| | || || ||||||||||||||||||||||||| Sbjct: 28562669 gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 28562610 Query: 121 ctggtcttgagaaagccgatgtcttccttttggttggtac 160 |||| ||||||||||| ||||||||||||||||||||||| Sbjct: 28562609 ctgggcttgagaaagctgatgtcttccttttggttggtac 28562570
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 192 bits (97), Expect = 8e-46 Identities = 273/329 (82%), Gaps = 2/329 (0%) Strand = Plus / Minus Query: 174 gaagctgctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtg 233 |||||||||||||| |||||||| || | ||||||||||||||| |||||||| ||||| Sbjct: 28653337 gaagctgctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggtt 28653278 Query: 234 ggctacattggtcctctggcagacttcaactatgacactcagcatcttggcacagggcca 293 | || ||||| |||| | ||||||||||||||| | ||||||||||||| || ||| Sbjct: 28653277 gcttatattggacctccaactgacttcaactatgaccatgagcatcttggcactggacca 28653218 Query: 294 gagacccttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgca 353 | |||||||||||||| || ||||| |||||||| ||||| |||| || ||||||| Sbjct: 28653217 caaacccttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgct 28653158 Query: 354 aagaacccagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtg 413 ||||| || || ||||| ||||| || ||||||||||| ||||||||||||| ||| | Sbjct: 28653157 aagaatcctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgccctt 28653098 Query: 414 ttctcaacaattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tgg 472 |||||||| || || ||||||||||| |||||||||||| |||||||||||||| || Sbjct: 28653097 ttctcaacgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacggg 28653038 Query: 473 cctcatgtcctattgct-catgctgcaca 500 | | |||| |||||||| ||||||||||| Sbjct: 28653037 cttaatgttctattgctgcatgctgcaca 28653009 Score = 190 bits (96), Expect = 3e-45 Identities = 144/160 (90%) Strand = Plus / Minus Query: 1 ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60 |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 28654053 ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 28653994 Query: 61 gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120 |||||||||| | ||| || || ||| | || || ||||||||||||||||||||||||| Sbjct: 28653993 gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 28653934 Query: 121 ctggtcttgagaaagccgatgtcttccttttggttggtac 160 |||| ||||||||||| ||||||||||||||||||||||| Sbjct: 28653933 ctgggcttgagaaagctgatgtcttccttttggttggtac 28653894
>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete sequence Length = 158839 Score = 192 bits (97), Expect = 8e-46 Identities = 273/329 (82%), Gaps = 2/329 (0%) Strand = Plus / Plus Query: 174 gaagctgctatggtgaatgcaaggattcagaagactgttagagcaacacaagcaaaggtg 233 |||||||||||||| |||||||| || | ||||||||||||||| |||||||| ||||| Sbjct: 136883 gaagctgctatggttaatgcaagaatccggaagactgttagagcgacacaagctaaggtt 136942 Query: 234 ggctacattggtcctctggcagacttcaactatgacactcagcatcttggcacagggcca 293 | || ||||| |||| | ||||||||||||||| | ||||||||||||| || ||| Sbjct: 136943 gcttatattggacctccaactgacttcaactatgaccatgagcatcttggcactggacca 137002 Query: 294 gagacccttgttgagatagctgagggccggcatcctttctgctcaatactaaagtctgca 353 | |||||||||||||| || ||||| |||||||| ||||| |||| || ||||||| Sbjct: 137003 caaacccttgttgagattgcagagggtcggcatcccttctgttcaactctgcagtctgct 137062 Query: 354 aagaacccagtaatcatcgctggagctgggttatttgaacgggaagaccaaggtgctgtg 413 ||||| || || ||||| ||||| || ||||||||||| ||||||||||||| ||| | Sbjct: 137063 aagaatcctgtcatcattgctggggccgggttatttgaccgggaagaccaagatgccctt 137122 Query: 414 ttctcaacaattgaaactgtagccaagaaattcaatgtgacgagaccagactggaa-tgg 472 |||||||| || || ||||||||||| |||||||||||| |||||||||||||| || Sbjct: 137123 ttctcaacgatagagactgtagccaaaaaattcaatgtggttagaccagactggaacggg 137182 Query: 473 cctcatgtcctattgct-catgctgcaca 500 | | |||| |||||||| ||||||||||| Sbjct: 137183 cttaatgttctattgctgcatgctgcaca 137211 Score = 190 bits (96), Expect = 3e-45 Identities = 144/160 (90%) Strand = Plus / Plus Query: 1 ccatgatggcgctgaaagattttgttaataaaatgggttccgataaggtgctctgtgagg 60 |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 136167 ccatgatggcactgaaagattttgttaacaaaatgggttcggataaggtgctttgtgaag 136226 Query: 61 gaaatggtccgaatccaccagcagatattcgatcaaactacctaatgaatactagcattg 120 |||||||||| | ||| || || ||| | || || ||||||||||||||||||||||||| Sbjct: 136227 gaaatggtccaagtcctcctgcggatctacgttctaactacctaatgaatactagcattg 136286 Query: 121 ctggtcttgagaaagccgatgtcttccttttggttggtac 160 |||| ||||||||||| ||||||||||||||||||||||| Sbjct: 136287 ctgggcttgagaaagctgatgtcttccttttggttggtac 136326
>dbj|AK072556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130E21, full insert sequence Length = 1107 Score = 153 bits (77), Expect = 7e-34 Identities = 241/293 (82%), Gaps = 2/293 (0%) Strand = Plus / Plus Query: 210 gttagagcaacacaagcaaaggtgggctacattggtcctctggcagacttcaactatgac 269 |||||||| |||||||| ||||| | || ||||| |||| | ||||||||||||||| Sbjct: 1 gttagagcgacacaagctaaggttgcttatattggacctccaactgacttcaactatgac 60 Query: 270 actcagcatcttggcacagggccagagacccttgttgagatagctgagggccggcatcct 329 | ||||||||||||| || ||| | |||||||||||||| || ||||| |||||||| Sbjct: 61 catgagcatcttggcactggaccacaaacccttgttgagattgcagagggtcggcatccc 120 Query: 330 ttctgctcaatactaaagtctgcaaagaacccagtaatcatcgctggagctgggttattt 389 ||||| |||| || ||||||| ||||| || || ||||| ||||| || ||||||||| Sbjct: 121 ttctgttcaactctgcagtctgctaagaatcctgtcatcattgctggggccgggttattt 180 Query: 390 gaacgggaagaccaaggtgctgtgttctcaacaattgaaactgtagccaagaaattcaat 449 || ||||||||||||| ||| | |||||||| || || ||||||||||| ||||||||| Sbjct: 181 gaccgggaagaccaagatgcccttttctcaacgatagagactgtagccaaaaaattcaat 240 Query: 450 gtgacgagaccagactggaa-tggcctcatgtcctattgct-catgctgcaca 500 ||| |||||||||||||| ||| | |||| |||||||| ||||||||||| Sbjct: 241 gtggttagaccagactggaacgggcttaatgttctattgctgcatgctgcaca 293
>emb|CT009535.6| M.truncatula DNA sequence from clone MTH2-68D12 on chromosome 3, complete sequence Length = 82241 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 105 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttgg 157 |||||||||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct: 37494 atgaatactagcattgctggtcttgagaaagcagatgctttcctgttggttgg 37442 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 169 gggtggaagctgctatggtgaatgc 193 ||||||||||||||||||| ||||| Sbjct: 37118 gggtggaagctgctatggttaatgc 37094
>ref|NM_123110.2| Arabidopsis thaliana EMB1467; NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron transporter/ iron ion binding / oxidoreductase AT5G37510 (EMB1467) transcript variant AT5G37510.2 mRNA, complete cds Length = 2527 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 105 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1359 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1418 Query: 165 cctagggtggaagctgctatggtgaatgcaaggat 199 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1419 cctagggtggaagctgcaatggtgaatgctaggat 1453
>ref|NM_180772.1| Arabidopsis thaliana EMB1467; NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron transporter/ iron ion binding / oxidoreductase AT5G37510 (EMB1467) transcript variant AT5G37510.1 mRNA, complete cds Length = 2623 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 105 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1359 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1418 Query: 165 cctagggtggaagctgctatggtgaatgcaaggat 199 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1419 cctagggtggaagctgcaatggtgaatgctaggat 1453
>gb|BT001090.1| Arabidopsis thaliana At4g37510/F6G17_160 mRNA, complete cds Length = 2040 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 105 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1279 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1338 Query: 165 cctagggtggaagctgctatggtgaatgcaaggat 199 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1339 cctagggtggaagctgcaatggtgaatgctaggat 1373
>gb|AY056140.1| Arabidopsis thaliana putative NADH dehydrogenase (ubiquinone) 76K chain precursor (At5g37510) mRNA, complete cds Length = 2526 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 105 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1331 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1390 Query: 165 cctagggtggaagctgctatggtgaatgcaaggat 199 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1391 cctagggtggaagctgcaatggtgaatgctaggat 1425
>gb|AY128304.1| Arabidopsis thaliana AT4g37510/F6G17_160 mRNA, complete cds Length = 2473 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 105 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1349 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1408 Query: 165 cctagggtggaagctgctatggtgaatgcaaggat 199 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1409 cctagggtggaagctgcaatggtgaatgctaggat 1443
>emb|BX831070.1|CNS09YQ6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS55ZD08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2528 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 105 atgaatactagcattgctggtcttgagaaagccgatgtcttccttttggttggtacgcag 164 ||||| |||||||| ||| ||||| || |||||| |||||||| | | ||||| ||| Sbjct: 1329 atgaacactagcatcagtggacttgaaaacgccgatctcttccttctcatcggtacccag 1388 Query: 165 cctagggtggaagctgctatggtgaatgcaaggat 199 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1389 cctagggtggaagctgcaatggtgaatgctaggat 1423
>emb|X85808.1|ST76CISUB S.tuberosum mRNA for 76 kDa mitochondrial complex I subunit Length = 2599 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 129 gagaaagccgatgtcttccttttggttggtacgcagcctagggtggaagctgctatggtg 188 |||||||| |||| ||||| |||||||| || ||||| ||||| ||||||||||||||| Sbjct: 1327 gagaaagcagatgctttcctcttggttggaacccagccaagggttgaagctgctatggtg 1386 Query: 189 aatgcaaggattca 202 ||||| || ||||| Sbjct: 1387 aatgccagaattca 1400
>dbj|AB025630.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA22 Length = 51436 Score = 60.0 bits (30), Expect = 7e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 162 cagcctagggtggaagctgctatggtgaatgcaaggat 199 |||||||||||||||||||| ||||||||||| ||||| Sbjct: 31589 cagcctagggtggaagctgcaatggtgaatgctaggat 31626
>gb|AE002105.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 6 of 59 of the complete genome Length = 11157 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 tgaaagattttgttaataaaa 33 ||||||||||||||||||||| Sbjct: 6721 tgaaagattttgttaataaaa 6741
>gb|AC108724.4| Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186773 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 gttctcaacaattgaaactgt 433 ||||||||||||||||||||| Sbjct: 53620 gttctcaacaattgaaactgt 53600
>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence Length = 191144 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 gttctcaacaattgaaactgt 433 ||||||||||||||||||||| Sbjct: 135107 gttctcaacaattgaaactgt 135087
>gb|AC010328.4| Homo sapiens chromosome 19 clone CITB-E1_2620I22, complete sequence Length = 196686 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 agggtggaagctgctatggtg 188 ||||||||||||||||||||| Sbjct: 51234 agggtggaagctgctatggtg 51254
>gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, complete sequence Length = 82884 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ctgaaagattttgttaataaa 32 ||||||||||||||||||||| Sbjct: 80711 ctgaaagattttgttaataaa 80691
>emb|AL592170.21| Human DNA sequence from clone RP11-298A19 on chromosome 22, complete sequence Length = 186861 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 gttctcaacaattgaaactgt 433 ||||||||||||||||||||| Sbjct: 53825 gttctcaacaattgaaactgt 53805
>emb|CR391917.19| Zebrafish DNA sequence from clone DKEY-97O8 in linkage group 1, complete sequence Length = 184212 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 453 acgagaccagactggaatggcctca 477 |||||||||||||||||||| |||| Sbjct: 163308 acgagaccagactggaatggtctca 163332
>emb|AL935287.15| Zebrafish DNA sequence from clone CH211-280O3, complete sequence Length = 174293 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 453 acgagaccagactggaatggcctca 477 |||||||||||||||||||| |||| Sbjct: 101336 acgagaccagactggaatggtctca 101312
>ref|XM_588709.2| PREDICTED: Bos taurus similar to kelch-like 20 (LOC511387), mRNA Length = 1812 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 aagattttgttaataaaatg 35 |||||||||||||||||||| Sbjct: 1411 aagattttgttaataaaatg 1392
>ref|XM_757461.1| Ustilago maydis 521 hypothetical protein (UM06407.1) partial mRNA Length = 2769 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 tgagaaagccgatgtcttcctttt 151 ||||||||||||| |||||||||| Sbjct: 2167 tgagaaagccgatttcttcctttt 2144
>emb|AL590114.14| Human DNA sequence from clone RP11-318H18 on chromosome X, complete sequence Length = 23809 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gaaactgtagccaagaaatt 445 |||||||||||||||||||| Sbjct: 20140 gaaactgtagccaagaaatt 20159
>gb|AC104439.2| Homo sapiens chromosome 3 clone RP11-793E15, complete sequence Length = 197279 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 ttggtcctctggcagacttcaact 264 |||||||||||||||||| ||||| Sbjct: 140791 ttggtcctctggcagactccaact 140768
>gb|AC093865.2| Homo sapiens BAC clone RP11-560C24 from 2, complete sequence Length = 186218 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 attcagaagactgttagagcaaca 221 ||||||||| |||||||||||||| Sbjct: 145508 attcagaagcctgttagagcaaca 145485
>gb|AC069394.6| Homo sapiens BAC clone RP11-731F1 from 2, complete sequence Length = 175352 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 accaaggtgctgtgttctca 419 |||||||||||||||||||| Sbjct: 72476 accaaggtgctgtgttctca 72457
>gb|AC138069.3| Homo sapiens chromosome 3 clone RP13-546I2, complete sequence Length = 177334 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 ttggtcctctggcagacttcaact 264 |||||||||||||||||| ||||| Sbjct: 38987 ttggtcctctggcagactccaact 38964 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,763,795 Number of Sequences: 3902068 Number of extensions: 4763795 Number of successful extensions: 80928 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80849 Number of HSP's gapped (non-prelim): 73 length of query: 500 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 478 effective length of database: 17,147,199,772 effective search space: 8196361491016 effective search space used: 8196361491016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)