ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTF4_MAIZE (P46420) Glutathione S-transferase IV (EC 2.5.1.18) ... 37 0.012
2GSTH1_ORYSA (O65857) Probable glutathione S-transferase GSTF1 (E... 35 0.045
3GSTH2_ORYSA (O82451) Probable glutathione S-transferase GSTF2 (E... 30 1.4
4GSTF3_MAIZE (P04907) Glutathione S-transferase III (EC 2.5.1.18)... 30 2.4
5GSTF2_WHEAT (P30111) Glutathione S-transferase 2 (EC 2.5.1.18) (... 29 3.2
6GSTF1_WHEAT (P30110) Glutathione S-transferase 1 (EC 2.5.1.18) (... 29 3.2
7GSTF1_MAIZE (P12653) Glutathione S-transferase I (EC 2.5.1.18) (... 28 7.1

>GSTF4_MAIZE (P46420) Glutathione S-transferase IV (EC 2.5.1.18) (GST-IV)|
           (GST-27) (GST class-phi)
          Length = 222

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 13/25 (52%), Positives = 22/25 (88%)
 Frame = +3

Query: 48  MKLYGWAVSPWMARVLVCLEESGAE 122
           +K+YGWA+SP+++R L+ LEE+G +
Sbjct: 5   VKVYGWAISPFVSRALLALEEAGVD 29



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>GSTH1_ORYSA (O65857) Probable glutathione S-transferase GSTF1 (EC 2.5.1.18)|
           (GST-I)
          Length = 219

 Score = 35.4 bits (80), Expect = 0.045
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +3

Query: 39  MAPMKLYGWAVSPWMARVLVCLEESGAE 122
           M P+K++G A S  +ARVL+CLEE GAE
Sbjct: 1   MTPVKVFGPAQSTNVARVLLCLEEVGAE 28



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>GSTH2_ORYSA (O82451) Probable glutathione S-transferase GSTF2 (EC 2.5.1.18)|
           (GST-II)
          Length = 214

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 42  APMKLYGWAVSPWMARVLVCLEESGAE 122
           APMKLYG  +S  + R +  LEE+GAE
Sbjct: 1   APMKLYGSTLSWNVTRCVAVLEEAGAE 27



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>GSTF3_MAIZE (P04907) Glutathione S-transferase III (EC 2.5.1.18) (GST-III) (GST|
           class-phi)
          Length = 221

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 42  APMKLYGWAVSPWMARVLVCLEESGAE 122
           AP+KLYG  +SP + RV   L E G +
Sbjct: 1   APLKLYGMPLSPNVVRVATVLNEKGLD 27



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>GSTF2_WHEAT (P30111) Glutathione S-transferase 2 (EC 2.5.1.18) (GST class-phi)|
          Length = 291

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +3

Query: 39  MAPMKLYGWAVSPWMARVLVCLEESGAE 122
           M+P+K++G  +   +ARVL+ LEE GAE
Sbjct: 1   MSPVKVFGHPMLTNVARVLLFLEEVGAE 28



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>GSTF1_WHEAT (P30110) Glutathione S-transferase 1 (EC 2.5.1.18) (GST class-phi)|
          Length = 229

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +3

Query: 39  MAPMKLYGWAVSPWMARVLVCLEESGAE 122
           M+P+K++G  +   +ARVL+ LEE GAE
Sbjct: 1   MSPVKVFGHPMLTNVARVLLFLEEVGAE 28



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>GSTF1_MAIZE (P12653) Glutathione S-transferase I (EC 2.5.1.18) (GST-I) (GST-29)|
           (GST class-phi)
          Length = 213

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 42  APMKLYGWAVSPWMARVLVCLEESGAE 122
           APMKLYG  +S  + R    LEE+G++
Sbjct: 1   APMKLYGAVMSWNLTRCATALEEAGSD 27


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,462,882
Number of Sequences: 219361
Number of extensions: 151144
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 80,573,946
effective HSP length: 16
effective length of database: 77,064,170
effective search space used: 1849540080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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