ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62h10 |
|---|---|
| Clone Library Name | barley_pub |
>CDSN_MOUSE (Q7TPC1) Corneodesmosin precursor| Length = 561 Score = 32.7 bits (73), Expect = 0.45 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Frame = +3 Query: 99 GEEASQGSEACNIYEQSGFAIVNFSYAYELGRKWP--SEDQDLPISAGSFFVIDEAGHRG 272 G +SQGS + ++ + G SY+Y G P S Q S+ + ++G G Sbjct: 88 GSSSSQGSSSGSLIYKPGTGYSQSSYSYGSGGSRPGGSGSQTGSSSSQTGSSSSQSGSSG 147 Query: 273 KRMKKSFSDQEASSEESNGQTQDKSQAIMTGSPTGTSGNLQVSPLSSKS 419 + S S +S +S SQ+ +GS +G+SG+ +SS S Sbjct: 148 SQSGSSGSQSGSSGSQSG---SSGSQSGSSGSQSGSSGSQSGRWVSSSS 193
>SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 (Ponsin)| (c-Cbl-associated protein) (CAP) (SH3 domain protein 5) (SH3P12) Length = 1290 Score = 30.4 bits (67), Expect = 2.3 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%) Frame = +3 Query: 120 SEACNIYEQSGFAIVNFSYAYELGRKWPSEDQD---LPISAGSFFVIDEAGHRGKRMKKS 290 S C++ S A+VN G P +D D + G+ + + +RG Sbjct: 2 SSECDV--GSSKAVVN---GLASGNHGPDKDMDPTKICTGKGTVTLRASSSYRGTPSSSP 56 Query: 291 FSDQEASSEESNGQTQDKSQAI---MTGSPTGTSGNLQVSPLSSKSMR 425 S QE+ ES + + + S T+GN Q SPL++K R Sbjct: 57 VSPQESPKHESKSGLEPEDPSADEWKLSSSADTNGNAQPSPLAAKGYR 104
>GRPE_METMA (P42367) Protein grpE (HSP-70 cofactor)| Length = 209 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +3 Query: 279 MKKSFSDQEASSEESNGQTQDKSQAIMTGSPTGTSGNLQVSPLSSKS 419 MKKS + S+E N + ++S+A + SP +G +VSP + S Sbjct: 1 MKKSRKKENMDSKERNQKEAERSEARNSESPAEKAGETKVSPENEPS 47
>YL227_MIMIV (Q5UQC6) Hypothetical protein L227| Length = 170 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%) Frame = +3 Query: 153 FAIVNFSYAYELGR-KWPSE----DQDLPISAGSFFVIDE 257 F+ NF Y YE+G+ PSE D D P+ G +F +DE Sbjct: 125 FSKYNFGYVYEIGQAAIPSERLETDLDNPLGPGIYFWLDE 164
>MIA40_YEAST (P36046) Intermembrane space import and assembly protein 40,| mitochondrial precursor (Mitochondrial import inner membrane translocase TIM40) Length = 403 Score = 29.3 bits (64), Expect = 5.0 Identities = 20/81 (24%), Positives = 38/81 (46%) Frame = +3 Query: 204 SEDQDLPISAGSFFVIDEAGHRGKRMKKSFSDQEASSEESNGQTQDKSQAIMTGSPTGTS 383 + D+ L +AGS D ++ ++ SD + ++E++NG+ + + + S Sbjct: 194 TSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTV------SDS 247 Query: 384 GNLQVSPLSSKSMRRELRKQK 446 N SS + ELRKQ+ Sbjct: 248 ENSAKQSESSDEEKEELRKQE 268
>41_DROME (Q9V8R9) Protein 4.1 homolog (Protein coracle)| Length = 1698 Score = 29.3 bits (64), Expect = 5.0 Identities = 19/77 (24%), Positives = 35/77 (45%) Frame = +3 Query: 213 QDLPISAGSFFVIDEAGHRGKRMKKSFSDQEASSEESNGQTQDKSQAIMTGSPTGTSGNL 392 + +PI+ FF D H K + S+ + + + D+ I+ GSP G +G Sbjct: 1373 ETVPITRQQFF--DGVKHISKGALRRDSEGSSDDDMTAQYGADQVNEILIGSPAGQAGGK 1430 Query: 393 QVSPLSSKSMRRELRKQ 443 P+S+ ++ + KQ Sbjct: 1431 LGKPVSTPTVVKTTTKQ 1447
>CYB6_HELGE (Q9L598) Cytochrome b6| Length = 213 Score = 28.9 bits (63), Expect = 6.6 Identities = 22/65 (33%), Positives = 30/65 (46%) Frame = -3 Query: 200 PLPSQLICIRKVDNGETRLFIDVTCLRAL*GFFSYPSTPDFADLLTSIASFSNLVCNVSI 21 P+PS + I G T L V CL + F Y TP+ A TS+ +N V S+ Sbjct: 22 PVPSHTLNIFFCLGGLTLLCFIVQCLTGIFLAFYYKPTPEAA--FTSVQMITNEVRFGSV 79 Query: 20 TQEMH 6 + MH Sbjct: 80 IRSMH 84
>RUVB2_USTMA (Q4P6N7) RuvB-like helicase 2 (EC 3.6.1.-)| Length = 476 Score = 28.9 bits (63), Expect = 6.6 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 16/104 (15%) Frame = +3 Query: 180 YELGRKWPSEDQDLPISAGSFFVIDEAGHRGKRMKKSFS---DQEASSEES------NGQ 332 YELG K Q ++AG ID+A R ++ +SF+ D +A ++ G+ Sbjct: 167 YELGNKMIDSLQKEKVTAGDVIAIDKASGRITKLGRSFTRARDYDAMGSDTKFVQCPEGE 226 Query: 333 TQDKSQAIMTGS-------PTGTSGNLQVSPLSSKSMRRELRKQ 443 Q + + T S + T G L + + ++ ELR Q Sbjct: 227 LQRRKDVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKPELRDQ 270
>FIS2_ARATH (Q9ZNT9) Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2| Length = 632 Score = 28.9 bits (63), Expect = 6.6 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +3 Query: 240 FFVIDEAGHRG-----KRMKKSFSDQEASSEESNGQTQD---KSQAIMTGSPTGTSGNLQ 395 F +I GH G K +F + +E+ +G D KS I G GN Q Sbjct: 15 FCLIPCGGHEGLQLHLKSSHDAFKFEFYRAEKDHGPEVDVSVKSDTIKFGVLKDDVGNPQ 74 Query: 396 VSPLSSKSMRRELRKQK 446 +SPL+ S R R+Q+ Sbjct: 75 LSPLTFCSKNRNQRRQR 91
>CSW_DROSI (Q8ISC9) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| (Fragment) Length = 555 Score = 28.9 bits (63), Expect = 6.6 Identities = 12/51 (23%), Positives = 29/51 (56%) Frame = +3 Query: 306 ASSEESNGQTQDKSQAIMTGSPTGTSGNLQVSPLSSKSMRRELRKQKRLAA 458 +++ SNG + A++ G G GN++ S S S++++ +++++ A Sbjct: 467 SNTSSSNGSSNGNINALLGGIGLGLGGNMRKSNFYSDSLKQQQQREEQAPA 517
>CSW_DROME (P29349) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| Length = 845 Score = 28.9 bits (63), Expect = 6.6 Identities = 12/51 (23%), Positives = 29/51 (56%) Frame = +3 Query: 306 ASSEESNGQTQDKSQAIMTGSPTGTSGNLQVSPLSSKSMRRELRKQKRLAA 458 +++ SNG + A++ G G GN++ S S S++++ +++++ A Sbjct: 757 STTSSSNGSSNGNINALLGGIGLGLGGNMRKSNFYSDSLKQQQQREEQAPA 807
>YRS3_CAEEL (Q09347) Hypothetical protein T05H10.3 precursor| Length = 158 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 203 RPLPSQLICIRKVDNGETRLFIDVTCLRAL*GFFSY 96 RP+P+ L C ++ +GE R + D+ C ++ F SY Sbjct: 54 RPVPTGLGCWQEDHDGEEREYCDIVCPKSHTVFISY 89
>MKC7_YEAST (P53379) Aspartic proteinase MKC7 precursor (EC 3.4.23.41) (Yapsin| 2) Length = 596 Score = 28.5 bits (62), Expect = 8.6 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +3 Query: 225 ISAGSFFVIDEAGHRGKRMKKSFSDQEASSEESNGQ-TQDKSQAI-MTGSPTGTSGNLQV 398 +S G+ F A + S S SS S GQ TQ + A+ ++ S + TS + Sbjct: 506 VSGGNMF--STAANSSISYFASTSHSATSSSSSKGQKTQTSTTALSISKSTSSTSSTGML 563 Query: 399 SPLSSKSMRRE 431 SP SS S R+E Sbjct: 564 SPTSSSSTRKE 574
>T7L1A_BRARE (Q9YHE8) Transcription factor 7-like 1-A (HMG box transcription| factor 3-A) (TCF-3-A) (TCF-3) (zTcf-3) (Protein headless) Length = 560 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%) Frame = +3 Query: 270 GKRMKKSFSDQEASSEESNGQTQDKSQAI-------MTGSPTGTSGNLQVSP 404 GKR K+ + S ESN Q K Q + M SPT + G++ SP Sbjct: 403 GKRKKRKRDCKSDSPSESNFSPQPKKQCVPYLSSEKMCDSPTSSHGSMLDSP 454
>DMXL2_HUMAN (Q8TDJ6) Protein DmX-like 2 (Rabconnectin-3)| Length = 3036 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = -3 Query: 233 SRDGKVLIFRRPLPSQLICIRKVDNGE-TRLFID 135 ++DG V +F P QL+C R+ N TRL+ + Sbjct: 2782 AQDGSVRMFEWTRPQQLVCFRQAGNARVTRLYFN 2815
>ISW1_YEAST (P38144) Chromatin remodelling complex ATPase chain ISW1 (EC 3.6.1.-)| Length = 1129 Score = 28.5 bits (62), Expect = 8.6 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Frame = +3 Query: 183 ELGRKWPSEDQDLPISAGSFFVIDEA--------GHRGKRMKKSFSDQEASSEESNGQTQ 338 EL R+ + Q L + V+D+A GKR+++ F+DQ A+ +E+ + Sbjct: 1041 ELARRGNTLLQCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVE 1100 Query: 339 DKSQAIMTGSPTGT 380 K I S GT Sbjct: 1101 SKKAKIEDTSNVGT 1114 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,967,468 Number of Sequences: 219361 Number of extensions: 1183771 Number of successful extensions: 3138 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3094 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3138 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
