ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62h06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 234 bits (118), Expect = 2e-58 Identities = 240/278 (86%), Gaps = 2/278 (0%) Strand = Plus / Minus Query: 128 ggtcaaggtgctgagcctgggcgacgtctacggcgccgacaccttcgggggttcgcggct 187 |||||||||||||||||||||| || ||||||| |||||||||||||| || ||| | Sbjct: 13932124 ggtcaaggtgctgagcctgggcaacatctacggtgccgacaccttcggcggagtgcgcat 13932065 Query: 188 ggaggacagcggctgcatcgccggcggcttcaaggt-gggcgctcgcgccgtcggccact 246 |||||||||||||||| |||| ||||||||||| || ||||| | | |||||||||||| Sbjct: 13932064 ggaggacagcggctgcgtcgctggcggcttcaaagttgggcgtac-caccgtcggccact 13932006 Query: 247 tgctcgtgtacgtctccaccaaggagccggtgacaagacgccgtacgccgtggaccgtgg 306 || |||||||| |||||||||| |||||||| | ||| || || ||||||||||||| Sbjct: 13932005 ccctggtgtacgtgtccaccaaggcgccggtgaaagcacggcgcaccccgtggaccgtgg 13931946 Query: 307 tgtacaggaccaacctcggcgacggcaagaccgagcgcctcaccccgccaggtcagtacg 366 ||||||| ||| |||||| ||||||||||||||||||||| || |||| || ||||||| Sbjct: 13931945 tgtacagaaccgacctcgccgacggcaagaccgagcgcctgacgccgctgggccagtacg 13931886 Query: 367 atgtgagcccggccgtgtcgccgtccgggaagatggtg 404 || |||||||||| |||||||||||||||||||||||| Sbjct: 13931885 atctgagcccggcggtgtcgccgtccgggaagatggtg 13931848 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 1 agtgcggcgccacgccggacgacgccgagaagggccgcgtcgccggcctcgtcttcgtct 60 ||||||||||||| ||||| ||||| ||||| ||||||||| ||||||| || ||||||| Sbjct: 13932248 agtgcggcgccaccccggaggacgcggagaaaggccgcgtcaccggcctggtgttcgtct 13932189 Query: 61 ccgagagggacaacgggctcgagacgctgcatgtggc 97 |||||||||||| || || ||||||||||| ||||| Sbjct: 13932188 ccgagagggacaggggcctggagacgctgcacgtggc 13932152
>dbj|AK110931.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F10, full insert sequence Length = 2745 Score = 234 bits (118), Expect = 2e-58 Identities = 240/278 (86%), Gaps = 2/278 (0%) Strand = Plus / Plus Query: 128 ggtcaaggtgctgagcctgggcgacgtctacggcgccgacaccttcgggggttcgcggct 187 |||||||||||||||||||||| || ||||||| |||||||||||||| || ||| | Sbjct: 416 ggtcaaggtgctgagcctgggcaacatctacggtgccgacaccttcggcggagtgcgcat 475 Query: 188 ggaggacagcggctgcatcgccggcggcttcaaggt-gggcgctcgcgccgtcggccact 246 |||||||||||||||| |||| ||||||||||| || ||||| | | |||||||||||| Sbjct: 476 ggaggacagcggctgcgtcgctggcggcttcaaagttgggcgtac-caccgtcggccact 534 Query: 247 tgctcgtgtacgtctccaccaaggagccggtgacaagacgccgtacgccgtggaccgtgg 306 || |||||||| |||||||||| |||||||| | ||| || || ||||||||||||| Sbjct: 535 ccctggtgtacgtgtccaccaaggcgccggtgaaagcacggcgcaccccgtggaccgtgg 594 Query: 307 tgtacaggaccaacctcggcgacggcaagaccgagcgcctcaccccgccaggtcagtacg 366 ||||||| ||| |||||| ||||||||||||||||||||| || |||| || ||||||| Sbjct: 595 tgtacagaaccgacctcgccgacggcaagaccgagcgcctgacgccgctgggccagtacg 654 Query: 367 atgtgagcccggccgtgtcgccgtccgggaagatggtg 404 || |||||||||| |||||||||||||||||||||||| Sbjct: 655 atctgagcccggcggtgtcgccgtccgggaagatggtg 692 Score = 89.7 bits (45), Expect = 7e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 1 agtgcggcgccacgccggacgacgccgagaagggccgcgtcgccggcctcgtcttcgtct 60 ||||||||||||| |||| ||||| ||||| ||||||||| ||||||| || ||||||| Sbjct: 292 agtgcggcgccacctcggaggacgcggagaaaggccgcgtcaccggcctggtgttcgtct 351 Query: 61 ccgagagggacaacgggctcgagacgctgcatgtggc 97 |||||||||||| || || ||||||||||| ||||| Sbjct: 352 ccgagagggacaggggcctggagacgctgcacgtggc 388
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 234 bits (118), Expect = 2e-58 Identities = 240/278 (86%), Gaps = 2/278 (0%) Strand = Plus / Minus Query: 128 ggtcaaggtgctgagcctgggcgacgtctacggcgccgacaccttcgggggttcgcggct 187 |||||||||||||||||||||| || ||||||| |||||||||||||| || ||| | Sbjct: 13886404 ggtcaaggtgctgagcctgggcaacatctacggtgccgacaccttcggcggagtgcgcat 13886345 Query: 188 ggaggacagcggctgcatcgccggcggcttcaaggt-gggcgctcgcgccgtcggccact 246 |||||||||||||||| |||| ||||||||||| || ||||| | | |||||||||||| Sbjct: 13886344 ggaggacagcggctgcgtcgctggcggcttcaaagttgggcgtac-caccgtcggccact 13886286 Query: 247 tgctcgtgtacgtctccaccaaggagccggtgacaagacgccgtacgccgtggaccgtgg 306 || |||||||| |||||||||| |||||||| | ||| || || ||||||||||||| Sbjct: 13886285 ccctggtgtacgtgtccaccaaggcgccggtgaaagcacggcgcaccccgtggaccgtgg 13886226 Query: 307 tgtacaggaccaacctcggcgacggcaagaccgagcgcctcaccccgccaggtcagtacg 366 ||||||| ||| |||||| ||||||||||||||||||||| || |||| || ||||||| Sbjct: 13886225 tgtacagaaccgacctcgccgacggcaagaccgagcgcctgacgccgctgggccagtacg 13886166 Query: 367 atgtgagcccggccgtgtcgccgtccgggaagatggtg 404 || |||||||||| |||||||||||||||||||||||| Sbjct: 13886165 atctgagcccggcggtgtcgccgtccgggaagatggtg 13886128 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 1 agtgcggcgccacgccggacgacgccgagaagggccgcgtcgccggcctcgtcttcgtct 60 ||||||||||||| ||||| ||||| ||||| ||||||||| ||||||| || ||||||| Sbjct: 13886528 agtgcggcgccaccccggaggacgcggagaaaggccgcgtcaccggcctggtgttcgtct 13886469 Query: 61 ccgagagggacaacgggctcgagacgctgcatgtggc 97 |||||||||||| || || ||||||||||| ||||| Sbjct: 13886468 ccgagagggacaggggcctggagacgctgcacgtggc 13886432
>emb|AL928747.3|CNS08CBK Oryza sativa chromosome 12, . BAC OSJNBa0017A21 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144552 Score = 234 bits (118), Expect = 2e-58 Identities = 240/278 (86%), Gaps = 2/278 (0%) Strand = Plus / Minus Query: 128 ggtcaaggtgctgagcctgggcgacgtctacggcgccgacaccttcgggggttcgcggct 187 |||||||||||||||||||||| || ||||||| |||||||||||||| || ||| | Sbjct: 68752 ggtcaaggtgctgagcctgggcaacatctacggtgccgacaccttcggcggagtgcgcat 68693 Query: 188 ggaggacagcggctgcatcgccggcggcttcaaggt-gggcgctcgcgccgtcggccact 246 |||||||||||||||| |||| ||||||||||| || ||||| | | |||||||||||| Sbjct: 68692 ggaggacagcggctgcgtcgctggcggcttcaaagttgggcgtac-caccgtcggccact 68634 Query: 247 tgctcgtgtacgtctccaccaaggagccggtgacaagacgccgtacgccgtggaccgtgg 306 || |||||||| |||||||||| |||||||| | ||| || || ||||||||||||| Sbjct: 68633 ccctggtgtacgtgtccaccaaggcgccggtgaaagcacggcgcaccccgtggaccgtgg 68574 Query: 307 tgtacaggaccaacctcggcgacggcaagaccgagcgcctcaccccgccaggtcagtacg 366 ||||||| ||| |||||| ||||||||||||||||||||| || |||| || ||||||| Sbjct: 68573 tgtacagaaccgacctcgccgacggcaagaccgagcgcctgacgccgctgggccagtacg 68514 Query: 367 atgtgagcccggccgtgtcgccgtccgggaagatggtg 404 || |||||||||| |||||||||||||||||||||||| Sbjct: 68513 atctgagcccggcggtgtcgccgtccgggaagatggtg 68476 Score = 97.6 bits (49), Expect = 3e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 1 agtgcggcgccacgccggacgacgccgagaagggccgcgtcgccggcctcgtcttcgtct 60 ||||||||||||| ||||| ||||| ||||| ||||||||| ||||||| || ||||||| Sbjct: 68876 agtgcggcgccaccccggaggacgcggagaaaggccgcgtcaccggcctggtgttcgtct 68817 Query: 61 ccgagagggacaacgggctcgagacgctgcatgtggc 97 |||||||||||| || || ||||||||||| ||||| Sbjct: 68816 ccgagagggacaggggcctggagacgctgcacgtggc 68780
>ref|XM_470902.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2235 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 33 ggccgcgtcgccggcctcgtcttcgtctccgagagggacaacgggctcgagacgctgcat 92 |||||| || ||||||| || ||||||||||||||||||| |||||| ||||||||||| Sbjct: 238 ggccgcatcaccggcctggtgttcgtctccgagagggacagcgggctggagacgctgcac 297 Query: 93 gtggccct 100 || ||||| Sbjct: 298 gtagccct 305 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 187 tggaggacagcggctgcatcgccggcggcttcaaggtgggcgctcgcgccgtcggccact 246 ||||||||||||||||| ||| |||||||| || || | ||| |||||||| | |||| Sbjct: 389 tggaggacagcggctgcttcggcggcggctacagggagcgcggccgcgccgtggaccaca 448 Query: 247 tgctcgtgtacgtctccaccaaggagccggtg 278 ||| |||||||| ||||||| |||||||||| Sbjct: 449 cgctggtgtacgtgtccaccagggagccggtg 480 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Plus Query: 370 tgagcccggccgtgtcgccgtccgggaagatggtg 404 ||||||| |||||||||||||| ||||||| |||| Sbjct: 572 tgagccccgccgtgtcgccgtcggggaagagggtg 606
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 33 ggccgcgtcgccggcctcgtcttcgtctccgagagggacaacgggctcgagacgctgcat 92 |||||| || ||||||| || ||||||||||||||||||| |||||| ||||||||||| Sbjct: 16263892 ggccgcatcaccggcctggtgttcgtctccgagagggacagcgggctggagacgctgcac 16263951 Query: 93 gtggccct 100 || ||||| Sbjct: 16263952 gtagccct 16263959 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 187 tggaggacagcggctgcatcgccggcggcttcaaggtgggcgctcgcgccgtcggccact 246 ||||||||||||||||| ||| |||||||| || || | ||| |||||||| | |||| Sbjct: 16264043 tggaggacagcggctgcttcggcggcggctacagggagcgcggccgcgccgtggaccaca 16264102 Query: 247 tgctcgtgtacgtctccaccaaggagccggtg 278 ||| |||||||| ||||||| |||||||||| Sbjct: 16264103 cgctggtgtacgtgtccaccagggagccggtg 16264134 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 33 ggccgcgtcgccggcctcgtcttcgtctccgagaggga 70 |||||| || |||||||||||||||||||||||||||| Sbjct: 11240253 ggccgcatcaccggcctcgtcttcgtctccgagaggga 11240290 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 187 tggaggacagcggctgcatcgccggcggcttcaaggtgg 225 ||||||||||||||||||| |||||||||| | |||||| Sbjct: 11240404 tggaggacagcggctgcattgccggcggctacgaggtgg 11240442 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Plus Query: 370 tgagcccggccgtgtcgccgtccgggaagatggtg 404 ||||||| |||||||||||||| ||||||| |||| Sbjct: 16264226 tgagccccgccgtgtcgccgtcggggaagagggtg 16264260
>gb|AC118134.3| Oryza sativa chromosome 3 BAC OSJNBb0041J20 genomic sequence, complete sequence Length = 135585 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 33 ggccgcgtcgccggcctcgtcttcgtctccgagagggacaacgggctcgagacgctgcat 92 |||||| || ||||||| || ||||||||||||||||||| |||||| ||||||||||| Sbjct: 61908 ggccgcatcaccggcctggtgttcgtctccgagagggacagcgggctggagacgctgcac 61967 Query: 93 gtggccct 100 || ||||| Sbjct: 61968 gtagccct 61975 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 187 tggaggacagcggctgcatcgccggcggcttcaaggtgggcgctcgcgccgtcggccact 246 ||||||||||||||||| ||| |||||||| || || | ||| |||||||| | |||| Sbjct: 62059 tggaggacagcggctgcttcggcggcggctacagggagcgcggccgcgccgtggaccaca 62118 Query: 247 tgctcgtgtacgtctccaccaaggagccggtg 278 ||| |||||||| ||||||| |||||||||| Sbjct: 62119 cgctggtgtacgtgtccaccagggagccggtg 62150 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Plus Query: 370 tgagcccggccgtgtcgccgtccgggaagatggtg 404 ||||||| |||||||||||||| ||||||| |||| Sbjct: 62242 tgagccccgccgtgtcgccgtcggggaagagggtg 62276
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 33 ggccgcgtcgccggcctcgtcttcgtctccgagagggacaacgggctcgagacgctgcat 92 |||||| || ||||||| || ||||||||||||||||||| |||||| ||||||||||| Sbjct: 16257525 ggccgcatcaccggcctggtgttcgtctccgagagggacagcgggctggagacgctgcac 16257584 Query: 93 gtggccct 100 || ||||| Sbjct: 16257585 gtagccct 16257592 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 187 tggaggacagcggctgcatcgccggcggcttcaaggtgggcgctcgcgccgtcggccact 246 ||||||||||||||||| ||| |||||||| || || | ||| |||||||| | |||| Sbjct: 16257676 tggaggacagcggctgcttcggcggcggctacagggagcgcggccgcgccgtggaccaca 16257735 Query: 247 tgctcgtgtacgtctccaccaaggagccggtg 278 ||| |||||||| ||||||| |||||||||| Sbjct: 16257736 cgctggtgtacgtgtccaccagggagccggtg 16257767 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 33 ggccgcgtcgccggcctcgtcttcgtctccgagaggga 70 |||||| || |||||||||||||||||||||||||||| Sbjct: 11237016 ggccgcatcaccggcctcgtcttcgtctccgagaggga 11237053 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 187 tggaggacagcggctgcatcgccggcggcttcaaggtgg 225 ||||||||||||||||||| |||||||||| | |||||| Sbjct: 11237167 tggaggacagcggctgcattgccggcggctacgaggtgg 11237205 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Plus Query: 370 tgagcccggccgtgtcgccgtccgggaagatggtg 404 ||||||| |||||||||||||| ||||||| |||| Sbjct: 16257859 tgagccccgccgtgtcgccgtcggggaagagggtg 16257893
>dbj|AK111515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E06, full insert sequence Length = 2363 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 33 ggccgcgtcgccggcctcgtcttcgtctccgagagggacaacgggctcgagacgctgcat 92 |||||| || ||||||| || ||||||||||||||||||| |||||| ||||||||||| Sbjct: 303 ggccgcatcaccggcctggtgttcgtctccgagagggacagcgggctggagacgctgcac 362 Query: 93 gtggccct 100 || ||||| Sbjct: 363 gtagccct 370 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 187 tggaggacagcggctgcatcgccggcggcttcaaggtgggcgctcgcgccgtcggccact 246 ||||||||||||||||| ||| |||||||| || || | ||| |||||||| | |||| Sbjct: 454 tggaggacagcggctgcttcggcggcggctacagggagcgcggccgcgccgtggaccaca 513 Query: 247 tgctcgtgtacgtctccaccaaggagccggtg 278 ||| |||||||| ||||||| |||||||||| Sbjct: 514 cgctggtgtacgtgtccaccagggagccggtg 545 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Plus Query: 370 tgagcccggccgtgtcgccgtccgggaagatggtg 404 ||||||| |||||||||||||| ||||||| |||| Sbjct: 637 tgagccccgccgtgtcgccgtcggggaagagggtg 671
>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0085H08, from chromosome 3, complete sequence Length = 130656 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 33 ggccgcgtcgccggcctcgtcttcgtctccgagaggga 70 |||||| || |||||||||||||||||||||||||||| Sbjct: 19206 ggccgcatcaccggcctcgtcttcgtctccgagaggga 19243 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 187 tggaggacagcggctgcatcgccggcggcttcaaggtgg 225 ||||||||||||||||||| |||||||||| | |||||| Sbjct: 19357 tggaggacagcggctgcattgccggcggctacgaggtgg 19395
>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0085H08, from chromosome 3, complete sequence Length = 126708 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 33 ggccgcgtcgccggcctcgtcttcgtctccgagaggga 70 |||||| || |||||||||||||||||||||||||||| Sbjct: 40795 ggccgcatcaccggcctcgtcttcgtctccgagaggga 40758 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 187 tggaggacagcggctgcatcgccggcggcttcaaggtgg 225 ||||||||||||||||||| |||||||||| | |||||| Sbjct: 40644 tggaggacagcggctgcattgccggcggctacgaggtgg 40606
>dbj|AK102644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033100G21, full insert sequence Length = 2495 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 33 ggccgcgtcgccggcctcgtcttcgtctccgagaggga 70 |||||| || |||||||||||||||||||||||||||| Sbjct: 309 ggccgcatcaccggcctcgtcttcgtctccgagaggga 346 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 187 tggaggacagcggctgcatcgccggcggcttcaaggtgg 225 ||||||||||||||||||| |||||||||| | |||||| Sbjct: 460 tggaggacagcggctgcattgccggcggctacgaggtgg 498
>dbj|AK065474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023F11, full insert sequence Length = 2495 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 33 ggccgcgtcgccggcctcgtcttcgtctccgagaggga 70 |||||| || |||||||||||||||||||||||||||| Sbjct: 309 ggccgcatcaccggcctcgtcttcgtctccgagaggga 346 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 187 tggaggacagcggctgcatcgccggcggcttcaaggtgg 225 ||||||||||||||||||| |||||||||| | |||||| Sbjct: 460 tggaggacagcggctgcattgccggcggctacgaggtgg 498
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 17 ggacgacgccgagaagggccgcgtcg 42 ||||||||||| |||||||||||||| Sbjct: 1662706 ggacgacgccgtgaagggccgcgtcg 1662681 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cagcggctgcatcgccggcg 213 |||||||||||||||||||| Sbjct: 1116710 cagcggctgcatcgccggcg 1116729
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 17 ggacgacgccgagaagggccgcgtcg 42 ||||||||||| |||||||||||||| Sbjct: 2907980 ggacgacgccgtgaagggccgcgtcg 2907955
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 17 ggacgacgccgagaagggccgcgtcg 42 ||||||||||| |||||||||||||| Sbjct: 2638071 ggacgacgccgtgaagggccgcgtcg 2638046 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cagcggctgcatcgccggcg 213 |||||||||||||||||||| Sbjct: 2292659 cagcggctgcatcgccggcg 2292678
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 321 ctcggcgacggcaagaccgagcgcct 346 |||||||| ||||||||||||||||| Sbjct: 265953 ctcggcgaaggcaagaccgagcgcct 265928
>gb|AY596291.1| Haloarcula marismortui ATCC 43049 plasmid pNG200, complete sequence Length = 33452 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 378 gccgtgtcgccgtccgggaag 398 ||||||||||||||||||||| Sbjct: 12078 gccgtgtcgccgtccgggaag 12058
>gb|AE009339.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 109 of 187 of the complete sequence Length = 11199 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 catcgccggcggcttcaaggt 223 ||||||||||||||||||||| Sbjct: 1112 catcgccggcggcttcaaggt 1092
>gb|AE008276.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 80 of 187 of the complete sequence Length = 9389 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 catcgccggcggcttcaaggt 223 ||||||||||||||||||||| Sbjct: 8278 catcgccggcggcttcaaggt 8298
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 gggccgcgtcgccggcctcgt 52 ||||||||||||||||||||| Sbjct: 8281546 gggccgcgtcgccggcctcgt 8281526 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 cgagaagggccgcgtcgccg 45 |||||||||||||||||||| Sbjct: 1370863 cgagaagggccgcgtcgccg 1370844
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 gacagcggctgcatcgccggcggct 216 ||||||||||||||||||| ||||| Sbjct: 633367 gacagcggctgcatcgccgccggct 633343
>gb|AY104099.1| Zea mays PCO109765 mRNA sequence Length = 1739 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 369 gtgagcccggccgtgtcgccg 389 ||||||||||||||||||||| Sbjct: 1139 gtgagcccggccgtgtcgccg 1119
>gb|AF033856.1|AF033856 Agrobacterium tumefaciens glycogen operon, complete sequence Length = 9386 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 catcgccggcggcttcaaggt 223 ||||||||||||||||||||| Sbjct: 8332 catcgccggcggcttcaaggt 8352
>gb|AC115691.8| Mus musculus chromosome 18, clone RP24-286B14, complete sequence Length = 175016 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tggcccttgtgcgccccaac 113 |||||||||||||||||||| Sbjct: 26724 tggcccttgtgcgccccaac 26705
>ref|XM_482599.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2292 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tcgccggcggcttcaaggtg 224 |||||||||||||||||||| Sbjct: 31 tcgccggcggcttcaaggtg 12
>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0122P24, complete sequence Length = 136104 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 26 cgagaagggccgcgtcgccggcctcgtc 53 |||||| | ||||||||||||||||||| Sbjct: 114350 cgagaacgtccgcgtcgccggcctcgtc 114377
>gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0023E20, complete sequence Length = 130827 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 26 cgagaagggccgcgtcgccggcctcgtc 53 |||||| | ||||||||||||||||||| Sbjct: 6721 cgagaacgtccgcgtcgccggcctcgtc 6748
>gb|AC125157.4| Mus musculus BAC clone RP24-390G17 from chromosome 18, complete sequence Length = 207265 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tggcccttgtgcgccccaac 113 |||||||||||||||||||| Sbjct: 79818 tggcccttgtgcgccccaac 79799
>emb|AL121827.34|HSA261N11 Human DNA sequence from clone RP11-261N11 on chromosome 20, complete sequence Length = 184223 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gtggtgcggtcaaggtgctg 140 |||||||||||||||||||| Sbjct: 129564 gtggtgcggtcaaggtgctg 129545
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gcggcgccacgccggacgac 23 |||||||||||||||||||| Sbjct: 216399 gcggcgccacgccggacgac 216380
>gb|DQ093071.1| Homo sapiens cholinergic receptor, nicotinic, alpha polypeptide 4 (CHRNA4) gene, complete cds Length = 20632 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gtggtgcggtcaaggtgctg 140 |||||||||||||||||||| Sbjct: 3297 gtggtgcggtcaaggtgctg 3316
>dbj|AK127527.1| Homo sapiens cDNA FLJ45620 fis, clone BRTHA3027638 Length = 3264 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gtggtgcggtcaaggtgctg 140 |||||||||||||||||||| Sbjct: 75 gtggtgcggtcaaggtgctg 56
>gb|L49337.2|RHMMOTB Sinorhizobium meliloti FlgC (flgC) gene, partial cds; FliE (fliE), FlgG (flgG), FlgA (flgA), FlgI (flgI), FlgH (flgH), FliL (fliL), FliP (fliP), FlaA (flaA), FlaB (flaB), FlaC (flaC), FlaD (flaD), MotB (motB), MotC (motC), MotD (motD), and transcriptional regulator genes, complete cds; and unknown genes Length = 19824 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ggcgacggcaagaccgagcg 343 |||||||||||||||||||| Sbjct: 4140 ggcgacggcaagaccgagcg 4159
>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042K08, from chromosome 2, complete sequence Length = 164628 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 26 cgagaagggccgcgtcgccggcctcgtc 53 |||||| | ||||||||||||||||||| Sbjct: 83030 cgagaacgtccgcgtcgccggcctcgtc 83057
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 acgtctccaccaaggagccg 275 |||||||||||||||||||| Sbjct: 4669344 acgtctccaccaaggagccg 4669363
>gb|AY129335.1| Mycobacteriophage Corndog, complete genome Length = 69777 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cggcggcttcaaggtgggcg 228 |||||||||||||||||||| Sbjct: 32243 cggcggcttcaaggtgggcg 32262
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gcgacgtctacggcgccgac 167 |||||||||||||||||||| Sbjct: 3436066 gcgacgtctacggcgccgac 3436047
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 26 cgagaagggccgcgtcgccggcctcgtc 53 |||||| | ||||||||||||||||||| Sbjct: 7356448 cgagaacgtccgcgtcgccggcctcgtc 7356421
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tcgccggcggcttcaaggtg 224 |||||||||||||||||||| Sbjct: 21330476 tcgccggcggcttcaaggtg 21330457
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cgccgtggaccgtggtgtac 311 |||||||||||||||||||| Sbjct: 27656657 cgccgtggaccgtggtgtac 27656676
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 cggcgacggcaagaccgagc 342 |||||||||||||||||||| Sbjct: 366495 cggcgacggcaagaccgagc 366514
>gb|AC007320.3|AC007320 Homo sapiens BAC clone RP11-477B5 from Y, complete sequence Length = 187894 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 gctgcatgtggcccttgtgc 105 |||||||||||||||||||| Sbjct: 32860 gctgcatgtggcccttgtgc 32841
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 181 cgcggctggagga-cagcggctgcatcgccgg 211 ||||||||||||| ||||||||||| |||||| Sbjct: 8954579 cgcggctggaggagcagcggctgcaacgccgg 8954610
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 gctgcatgtggcccttgtgc 105 |||||||||||||||||||| Sbjct: 484261 gctgcatgtggcccttgtgc 484242
>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07 Length = 170587 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cgccgtggaccgtggtgtac 311 |||||||||||||||||||| Sbjct: 136326 cgccgtggaccgtggtgtac 136345
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cgccgtggaccgtggtgtac 311 |||||||||||||||||||| Sbjct: 42523 cgccgtggaccgtggtgtac 42542
>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11 Length = 170723 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tcgccggcggcttcaaggtg 224 |||||||||||||||||||| Sbjct: 156753 tcgccggcggcttcaaggtg 156734
>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0524F03 Length = 167696 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tcgccggcggcttcaaggtg 224 |||||||||||||||||||| Sbjct: 30401 tcgccggcggcttcaaggtg 30382
>dbj|AK110121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-B07, full insert sequence Length = 3052 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 caacgggctcgagacgctgc 90 |||||||||||||||||||| Sbjct: 2405 caacgggctcgagacgctgc 2424
>dbj|AK067282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102K12, full insert sequence Length = 2575 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tcgccggcggcttcaaggtg 224 |||||||||||||||||||| Sbjct: 80 tcgccggcggcttcaaggtg 61
>dbj|AK065416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022N12, full insert sequence Length = 1377 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 26 cgagaagggccgcgtcgccggcctcgtc 53 |||||| | ||||||||||||||||||| Sbjct: 686 cgagaacgtccgcgtcgccggcctcgtc 713
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 26 cgagaagggccgcgtcgccggcctcgtc 53 |||||| | ||||||||||||||||||| Sbjct: 7426534 cgagaacgtccgcgtcgccggcctcgtc 7426507 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,173,354 Number of Sequences: 3902068 Number of extensions: 2173354 Number of successful extensions: 42711 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 40844 Number of HSP's gapped (non-prelim): 1904 length of query: 404 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 382 effective length of database: 17,147,199,772 effective search space: 6550230312904 effective search space used: 6550230312904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
