>ALLC_BRARE (Q6DGA6) Allantoicase (EC 3.5.3.4) (Allantoate amidinohydrolase)|
          Length = 395

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 56  GGEGTANNYLSLSLPHRITHTR 121
           G   T +NYLS+S PHR+TH R
Sbjct: 161 GYSDTCHNYLSVSYPHRVTHIR 182

>HIRA_DROME (O17468) HIRA protein homolog (dHIRA)|
          Length = 1047

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 102 CGSDRER*LFAVPSPPLQLCSSGGG 28
           C S+R++ +FA P+PP Q  +S  G
Sbjct: 873 CKSERQKDIFATPAPPQQKTASSAG 897

>PO3F4_RAT (P62516) POU domain, class 3, transcription factor 4|
           (Brain-specific homeobox/POU domain protein 4) (Brain-4)
           (Brn-4) (RHS2 class III POU protein)
          Length = 361

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +1

Query: 67  NRKQLSLSITPA----PHNPHTHNVHTDHSC 147
           NR+Q    +TP     PH  ++H V TD SC
Sbjct: 328 NRRQKEKRMTPPGDQQPHEVYSHTVKTDASC 358

>PO3F4_MOUSE (P62515) POU domain, class 3, transcription factor 4|
           (Brain-specific homeobox/POU domain protein 4) (Brain-4)
           (Brn-4)
          Length = 361

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +1

Query: 67  NRKQLSLSITPA----PHNPHTHNVHTDHSC 147
           NR+Q    +TP     PH  ++H V TD SC
Sbjct: 328 NRRQKEKRMTPPGDQQPHEVYSHTVKTDASC 358

>PO3F4_MESAU (Q812B1) POU domain, class 3, transcription factor 4|
           (Brain-specific homeobox/POU domain protein 4) (Brain-4)
           (Brn-4)
          Length = 361

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +1

Query: 67  NRKQLSLSITPA----PHNPHTHNVHTDHSC 147
           NR+Q    +TP     PH  ++H V TD SC
Sbjct: 328 NRRQKEKRMTPPGDQQPHEVYSHTVKTDASC 358

>PO3F4_HUMAN (P49335) POU domain, class 3, transcription factor 4|
           (Brain-specific homeobox/POU domain protein 4) (Brain-4)
           (Brn-4)
          Length = 361

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +1

Query: 67  NRKQLSLSITPA----PHNPHTHNVHTDHSC 147
           NR+Q    +TP     PH  ++H V TD SC
Sbjct: 328 NRRQKEKRMTPPGDQQPHEVYSHTVKTDTSC 358

>GPMI_METMA (Q8PYF8) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 521

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 37  GGAKLQGGRGNRKQLSLSITPAPHNPHTHN 126
           G A +    GN +Q+  S T  PH  HT N
Sbjct: 444 GAALITADHGNAEQMENSHTGEPHTAHTSN 473


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.135    0.480 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,202,029
Number of Sequences: 219361
Number of extensions: 506323
Number of successful extensions: 1619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)