ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62h05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1506 Score = 105 bits (53), Expect = 1e-19 Identities = 65/69 (94%) Strand = Plus / Plus Query: 321 acagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtg 380 ||||| |||| |||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 39 acaggaacggcatggacggcgacggcgcacatcataacggcggtgatcggctccggcgtg 98 Query: 381 ctgtcgctg 389 ||||||||| Sbjct: 99 ctgtcgctg 107
>dbj|AK070030.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N07, full insert sequence Length = 1506 Score = 105 bits (53), Expect = 1e-19 Identities = 65/69 (94%) Strand = Plus / Plus Query: 321 acagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtg 380 ||||| |||| |||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 39 acaggaacggcatggacggcgacggcgcacatcataacggcggtgatcggctccggcgtg 98 Query: 381 ctgtcgctg 389 ||||||||| Sbjct: 99 ctgtcgctg 107
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 103 bits (52), Expect = 4e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||||| Sbjct: 20864106 cagggacggtgtggacggcgacggcgcacataatcacggcggtgatcgggtccggcgtgc 20864165 Query: 382 tgtcgctg 389 |||||||| Sbjct: 20864166 tgtcgctg 20864173 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 288 ggcgacgtcgacgacgacggcagggagaggaggacagg 325 |||||||||||||||||||||| ||||||||||||||| Sbjct: 20860654 ggcgacgtcgacgacgacggcaaggagaggaggacagg 20860691 Score = 65.9 bits (33), Expect = 9e-08 Identities = 48/53 (90%) Strand = Plus / Plus Query: 330 gtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgct 382 |||||||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 20841847 gtatggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgct 20841899 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||||||||| | ||||||||| |||| |||||||||||||||||| Sbjct: 6695463 gcgcacatcgtcacggcggtggtcggctccggcgtgctgtcgctg 6695419 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 ggcgacgtcgacgacgacggc 308 ||||||||||||||||||||| Sbjct: 21357149 ggcgacgtcgacgacgacggc 21357169
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 103 bits (52), Expect = 4e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||| |||| |||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct: 30011910 caggaacggcatggacggcgacggcgcacatcataacggcggtgatcggctccggcgtgc 30011969 Query: 382 tgtcgctg 389 |||||||| Sbjct: 30011970 tgtcgctg 30011977 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||||| |||||||||||| |||||||||| ||||||||||||||||| || |||||| Sbjct: 120004 gggacggtgtggacggcggcgtcgcacatcatcacggcggtgatcgggtcaggtgtgctg 120063 Query: 384 tcgctg 389 |||||| Sbjct: 120064 tcgctg 120069 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 283 gcgagggcgacgtcgacgacgacggc 308 |||||||||||| ||||||||||||| Sbjct: 27937512 gcgagggcgacggcgacgacgacggc 27937537 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 283 gcgagggcgacgtcgacgacgacggcagg 311 |||||| ||||| |||||||||||||||| Sbjct: 26270097 gcgaggacgacgacgacgacgacggcagg 26270125
>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E11 Length = 148798 Score = 103 bits (52), Expect = 4e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||||| Sbjct: 118781 cagggacggtgtggacggcgacggcgcacataatcacggcggtgatcgggtccggcgtgc 118840 Query: 382 tgtcgctg 389 |||||||| Sbjct: 118841 tgtcgctg 118848 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 288 ggcgacgtcgacgacgacggcagggagaggaggacagg 325 |||||||||||||||||||||| ||||||||||||||| Sbjct: 115329 ggcgacgtcgacgacgacggcaaggagaggaggacagg 115366 Score = 65.9 bits (33), Expect = 9e-08 Identities = 48/53 (90%) Strand = Plus / Plus Query: 330 gtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgct 382 |||||||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 96522 gtatggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgct 96574
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 103 bits (52), Expect = 4e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||| |||| |||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct: 112186 caggaacggcatggacggcgacggcgcacatcataacggcggtgatcggctccggcgtgc 112245 Query: 382 tgtcgctg 389 |||||||| Sbjct: 112246 tgtcgctg 112253
>ref|NM_190137.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1398 Score = 93.7 bits (47), Expect = 4e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 319 ggacagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcg 378 ||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||||| Sbjct: 50 ggacagggacggtatggacggcgacggcgcacattgttacggcggtgatcggctccggcg 109 Query: 379 tgctgtcgctg 389 ||||| ||||| Sbjct: 110 tgctggcgctg 120
>dbj|AK073884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073B17, full insert sequence Length = 1762 Score = 93.7 bits (47), Expect = 4e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 319 ggacagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcg 378 ||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||||| Sbjct: 126 ggacagggacggtatggacggcgacggcgcacattgttacggcggtgatcggctccggcg 185 Query: 379 tgctgtcgctg 389 ||||| ||||| Sbjct: 186 tgctggcgctg 196
>ref|XM_463785.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1814 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||||| |||||||||||| |||||||||| ||||||||||||||||| || |||||| Sbjct: 319 gggacggtgtggacggcggcgtcgcacatcatcacggcggtgatcgggtcaggtgtgctg 378 Query: 384 tcgctg 389 |||||| Sbjct: 379 tcgctg 384
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||||| |||||||||||| |||||||||| ||||||||||||||||| || |||||| Sbjct: 114613 gggacggtgtggacggcggcgtcgcacatcatcacggcggtgatcgggtcaggtgtgctg 114672 Query: 384 tcgctg 389 |||||| Sbjct: 114673 tcgctg 114678
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||||| |||||||||||| |||||||||| ||||||||||||||||| || |||||| Sbjct: 69031 gggacggtgtggacggcggcgtcgcacatcatcacggcggtgatcgggtcaggtgtgctg 69090 Query: 384 tcgctg 389 |||||| Sbjct: 69091 tcgctg 69096
>dbj|AK060685.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G03, full insert sequence Length = 1835 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||||| |||||||||||| |||||||||| ||||||||||||||||| || |||||| Sbjct: 340 gggacggtgtggacggcggcgtcgcacatcatcacggcggtgatcgggtcaggtgtgctg 399 Query: 384 tcgctg 389 |||||| Sbjct: 400 tcgctg 405
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 87.7 bits (44), Expect = 3e-14 Identities = 62/68 (91%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 ||||||||| |||||||||||||||||| | || |||||||||||||||||||| |||| Sbjct: 23497997 cagggacggagtggacggcggcggcgcacgtgatcacggcggtgatcgggtccggggtgc 23497938 Query: 382 tgtcgctg 389 |||||||| Sbjct: 23497937 tgtcgctg 23497930 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 24509818 gcgcacatcatcacggcggtgatcgggtccggcgtgctgtcgctg 24509862 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||||| |||||| | |||||||||||| |||||||||||||||||||| |||| Sbjct: 23490529 cagggacggtgtggacgtgcgtggcgcacatcatcacggcggtgatcgggtccggggtgc 23490470 Query: 382 tgtcgctg 389 |||||||| Sbjct: 23490469 tgtcgctg 23490462 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 |||||||| || || ||||||||||||| |||||||||| ||||| Sbjct: 33695966 gcgcacattatcaccgcggtgatcgggtgcggcgtgctggcgctg 33696010 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 cagcgagggcgacgtcgacgacgacggc 308 |||||| ||||||| ||||||||||||| Sbjct: 27373377 cagcgatggcgacgacgacgacgacggc 27373350
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 87.7 bits (44), Expect = 3e-14 Identities = 62/68 (91%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||||||||||||||| |||||||||| | |||||||||||||| |||||||||| Sbjct: 38113372 cagggacggtatggacggcgacggcgcacattgttacggcggtgatcggctccggcgtgc 38113313 Query: 382 tgtcgctg 389 || ||||| Sbjct: 38113312 tggcgctg 38113305 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||| | ||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct: 38305501 cagggacgatgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgc 38305442 Query: 382 tgtcgctg 389 |||||||| Sbjct: 38305441 tgtcgctg 38305434 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 321 acagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtg 380 ||||| ||||||||||||||| || ||||| ||| || || ||||||||||| |||||| Sbjct: 38128539 acaggaacggtatggacggcgacgacgcacgccatcaccgccgtgatcgggtcaggcgtg 38128480 Query: 381 ctgtcgctgcc 391 ||| ||||||| Sbjct: 38128479 ctggcgctgcc 38128469
>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0471B04 Length = 138025 Score = 87.7 bits (44), Expect = 3e-14 Identities = 62/68 (91%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||||||||||||||| |||||||||| | |||||||||||||| |||||||||| Sbjct: 81406 cagggacggtatggacggcgacggcgcacattgttacggcggtgatcggctccggcgtgc 81347 Query: 382 tgtcgctg 389 || ||||| Sbjct: 81346 tggcgctg 81339 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 321 acagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtg 380 ||||| ||||||||||||||| || ||||| ||| || || ||||||||||| |||||| Sbjct: 96573 acaggaacggtatggacggcgacgacgcacgccatcaccgccgtgatcgggtcaggcgtg 96514 Query: 381 ctgtcgctgcc 391 ||| ||||||| Sbjct: 96513 ctggcgctgcc 96503
>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0018C10 Length = 200183 Score = 87.7 bits (44), Expect = 3e-14 Identities = 62/68 (91%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||||||||||||||| |||||||||| | |||||||||||||| |||||||||| Sbjct: 32606 cagggacggtatggacggcgacggcgcacattgttacggcggtgatcggctccggcgtgc 32547 Query: 382 tgtcgctg 389 || ||||| Sbjct: 32546 tggcgctg 32539 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 321 acagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtg 380 ||||| ||||||||||||||| || ||||| ||| || || ||||||||||| |||||| Sbjct: 47773 acaggaacggtatggacggcgacgacgcacgccatcaccgccgtgatcgggtcaggcgtg 47714 Query: 381 ctgtcgctgcc 391 ||| ||||||| Sbjct: 47713 ctggcgctgcc 47703
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence Length = 139298 Score = 87.7 bits (44), Expect = 3e-14 Identities = 62/68 (91%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 ||||||||| |||||||||||||||||| | || |||||||||||||||||||| |||| Sbjct: 53900 cagggacggagtggacggcggcggcgcacgtgatcacggcggtgatcgggtccggggtgc 53841 Query: 382 tgtcgctg 389 |||||||| Sbjct: 53840 tgtcgctg 53833 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||||| |||||| | |||||||||||| |||||||||||||||||||| |||| Sbjct: 46432 cagggacggtgtggacgtgcgtggcgcacatcatcacggcggtgatcgggtccggggtgc 46373 Query: 382 tgtcgctg 389 |||||||| Sbjct: 46372 tgtcgctg 46365
>ref|XM_472826.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 ||||||| |||||||||||||||||| | || |||||||||||||||||||| |||||| Sbjct: 91 gggacggagtggacggcggcggcgcacgtgatcacggcggtgatcgggtccggggtgctg 150 Query: 384 tcgctg 389 |||||| Sbjct: 151 tcgctg 156
>gb|AC145322.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0096N19, complete sequence Length = 178671 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 61836 gggacggtgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgctg 61777 Query: 384 tcgctg 389 |||||| Sbjct: 61776 tcgctg 61771
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 4769838 gggacggtgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgctg 4769897 Query: 384 tcgctg 389 |||||| Sbjct: 4769898 tcgctg 4769903
>dbj|AK104370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-E06, full insert sequence Length = 1707 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 224 gggacggtgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgctg 283 Query: 384 tcgctg 389 |||||| Sbjct: 284 tcgctg 289
>dbj|AK071044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081F09, full insert sequence Length = 1809 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 ||||||| |||||||||||||||||| | || |||||||||||||||||||| |||||| Sbjct: 199 gggacggagtggacggcggcggcgcacgtgatcacggcggtgatcgggtccggggtgctg 258 Query: 384 tcgctg 389 |||||| Sbjct: 259 tcgctg 264
>dbj|AK068003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129H02, full insert sequence Length = 1781 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 211 gggacggtgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgctg 270 Query: 384 tcgctg 389 |||||| Sbjct: 271 tcgctg 276
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 4788622 gggacggtgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgctg 4788681 Query: 384 tcgctg 389 |||||| Sbjct: 4788682 tcgctg 4788687
>ref|XM_472988.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1467 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 121 gcgcacatcatcacggcggtgatcgggtccggcgtgctgtcgctg 165
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16, complete sequence Length = 146313 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 69449 gcgcacatcatcacggcggtgatcgggtccggcgtgctgtcgctg 69493
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20, complete sequence Length = 116983 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 103140 gcgcacatcatcacggcggtgatcgggtccggcgtgctgtcgctg 103184
>ref|XM_476538.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1708 Score = 79.8 bits (40), Expect = 6e-12 Identities = 85/100 (85%) Strand = Plus / Plus Query: 290 cgacgtcgacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgca 349 |||| |||||||||||||| | |||| | | ||||||||| | ||||||| ||||| Sbjct: 179 cgacctcgacgacgacggccgcgagaagcgcacagggacgctggtgacggcgagcgcgca 238 Query: 350 catcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||| ||||||||||||||||| |||||||||||||||||| Sbjct: 239 cataataacggcggtgatcggctccggcgtgctgtcgctg 278
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||| | ||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct: 66326 cagggacgatgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgc 66267 Query: 382 tgtcgctg 389 |||||||| Sbjct: 66266 tgtcgctg 66259
>dbj|AK120257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013046A03, full insert sequence Length = 1870 Score = 79.8 bits (40), Expect = 6e-12 Identities = 85/100 (85%) Strand = Plus / Plus Query: 290 cgacgtcgacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgca 349 |||| |||||||||||||| | |||| | | ||||||||| | ||||||| ||||| Sbjct: 181 cgacctcgacgacgacggccgcgagaagcgcacagggacgctggtgacggcgagcgcgca 240 Query: 350 catcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||| ||||||||||||||||| |||||||||||||||||| Sbjct: 241 cataataacggcggtgatcggctccggcgtgctgtcgctg 280
>dbj|AK106110.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D09, full insert sequence Length = 1708 Score = 79.8 bits (40), Expect = 6e-12 Identities = 85/100 (85%) Strand = Plus / Plus Query: 290 cgacgtcgacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgca 349 |||| |||||||||||||| | |||| | | ||||||||| | ||||||| ||||| Sbjct: 179 cgacctcgacgacgacggccgcgagaagcgcacagggacgctggtgacggcgagcgcgca 238 Query: 350 catcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||| ||||||||||||||||| |||||||||||||||||| Sbjct: 239 cataataacggcggtgatcggctccggcgtgctgtcgctg 278
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 77.8 bits (39), Expect = 2e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 323 agggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgct 382 ||||||| | ||||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 57186 agggacgatgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgct 57245 Query: 383 gtcgctg 389 ||||||| Sbjct: 57246 gtcgctg 57252
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 77.8 bits (39), Expect = 2e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 323 agggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgct 382 ||||||| | ||||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 20635146 agggacgatgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgct 20635205 Query: 383 gtcgctg 389 ||||||| Sbjct: 20635206 gtcgctg 20635212 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||| ||||||||||||| | |||| ||||| | |||||||||||||| |||||||||| Sbjct: 744525 caggcacggtatggacggagacggcacacattgttacggcggtgatcggctccggcgtgc 744584 Query: 382 tg 383 || Sbjct: 744585 tg 744586 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 gggaggcggcggcaagggagaggcg 235 |||||||||||||||||| |||||| Sbjct: 8461366 gggaggcggcggcaagggggaggcg 8461342 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 gggaggcggcggcaagggagaggcg 235 |||||||||||||||||| |||||| Sbjct: 8461335 gggaggcggcggcaagggggaggcg 8461311 Score = 40.1 bits (20), Expect = 5.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 199 gatcgacgcgaagggaggcggcggcaagggag 230 ||||||||| |||| ||||||||||||||||| Sbjct: 26873064 gatcgacgc-aaggcaggcggcggcaagggag 26873034
>ref|XM_463528.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1467 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||| | ||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 127 gggacgatgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgctg 186 Query: 384 tcgctg 389 |||||| Sbjct: 187 tcgctg 192
>dbj|AK065891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D15, full insert sequence Length = 1975 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||| | ||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 244 gggacgatgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgctg 303 Query: 384 tcgctg 389 |||||| Sbjct: 304 tcgctg 309
>dbj|AK059325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A01, full insert sequence Length = 1858 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 324 gggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctg 383 |||||| | ||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 287 gggacgatgtggacggcgagcgcgcacatcatcacggcggtgatcggctccggcgtgctg 346 Query: 384 tcgctg 389 |||||| Sbjct: 347 tcgctg 352
>ref|XM_476539.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1775 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 109 gcgcacataataacggcggtgatcggctccggcgtgctgtcgctg 153
>gb|AY224447.1| Oryza sativa (japonica cultivar-group) isolate 23048 amino acid permease-like protein mRNA, partial cds Length = 915 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 40 gcgcacataataacggcggtgatcggctccggcgtgctgtcgctg 84
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 1826365 gcgcacataataacggcggtgatcggctccggcgtgctgtcgctg 1826321
>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0507H12 Length = 143030 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 30944 gcgcacataataacggcggtgatcggctccggcgtgctgtcgctg 30900
>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_D07 Length = 131449 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 78584 gcgcacataataacggcggtgatcggctccggcgtgctgtcgctg 78540
>dbj|AK103862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149D13, full insert sequence Length = 1774 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 108 gcgcacataataacggcggtgatcggctccggcgtgctgtcgctg 152
>dbj|AK102763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D14, full insert sequence Length = 1890 Score = 71.9 bits (36), Expect = 1e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 291 gacgtcgacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcac 350 ||||||||||||||||||| | || || | || || | |||||||||||| |||||| Sbjct: 187 gacgtcgacgacgacggcaagcagcggcgaaccggtaacgtatggacggcgagcgcgcac 246 Query: 351 atcataacggcggtgatcgggtccggcgtgct 382 ||||| |||||||||||||| ||||||||||| Sbjct: 247 atcatcacggcggtgatcggctccggcgtgct 278
>dbj|AK058304.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H01, full insert sequence Length = 1823 Score = 71.9 bits (36), Expect = 1e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 291 gacgtcgacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcac 350 ||||||||||||||||||| | || || | || || | |||||||||||| |||||| Sbjct: 184 gacgtcgacgacgacggcaagcagcggcgaaccggtaacgtatggacggcgagcgcgcac 243 Query: 351 atcataacggcggtgatcgggtccggcgtgct 382 ||||| |||||||||||||| ||||||||||| Sbjct: 244 atcatcacggcggtgatcggctccggcgtgct 275
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctgccctggg 396 ||||||||||| || || |||||||||||||| |||||||||||||| |||| Sbjct: 4893438 gcgcacatcatcaccgccgtgatcgggtccggggtgctgtcgctgccgtggg 4893387 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||||| ||||||||| || |||||||| | |||||||| |||| |||||||||| Sbjct: 4880758 cagggacggtgtggacggcgacgtcgcacatcgtggcggcggtggtcggctccggcgtgc 4880817 Query: 382 tgtcgctg 389 || ||||| Sbjct: 4880818 tggcgctg 4880825 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||| ||||||||| ||||| |||| ||||| | |||||||||||||| |||||||||| Sbjct: 5410968 caggcacggtatgggcggcgacggcacacattgttacggcggtgatcggctccggcgtgc 5410909 Query: 382 tg 383 || Sbjct: 5410908 tg 5410907 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Minus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||||||||||| || || || ||||| |||||||||||||||||| Sbjct: 4145425 gcgcacatcatcaccgccgtcatcggctccggcgtgctgtcgctg 4145381 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/93 (81%) Strand = Plus / Plus Query: 297 gacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcacatcata 356 ||||||||||| ||| | || |||| || ||| | ||||||||| ||||||||||| Sbjct: 4120108 gacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatc 4120167 Query: 357 acggcggtgatcgggtccggcgtgctgtcgctg 389 || || || ||||| |||||||||||||||||| Sbjct: 4120168 accgccgtcatcggctccggcgtgctgtcgctg 4120200
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120825 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||||| ||||||||| || |||||||| | |||||||| |||| |||||||||| Sbjct: 57664 cagggacggtgtggacggcgacgtcgcacatcgtggcggcggtggtcggctccggcgtgc 57605 Query: 382 tgtcgctg 389 || ||||| Sbjct: 57604 tggcgctg 57597 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctgccctggg 396 ||||||||||| || || |||||||||||||| |||||||||||||| |||| Sbjct: 44984 gcgcacatcatcaccgccgtgatcgggtccggggtgctgtcgctgccgtggg 45035
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctgccctggg 396 ||||||||||| || || |||||||||||||| |||||||||||||| |||| Sbjct: 4893420 gcgcacatcatcaccgccgtgatcgggtccggggtgctgtcgctgccgtggg 4893369 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||||| ||||||||| || |||||||| | |||||||| |||| |||||||||| Sbjct: 4880740 cagggacggtgtggacggcgacgtcgcacatcgtggcggcggtggtcggctccggcgtgc 4880799 Query: 382 tgtcgctg 389 || ||||| Sbjct: 4880800 tggcgctg 4880807 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||| ||||||||| ||||| |||| ||||| | |||||||||||||| |||||||||| Sbjct: 5410957 caggcacggtatgggcggcgacggcacacattgttacggcggtgatcggctccggcgtgc 5410898 Query: 382 tg 383 || Sbjct: 5410897 tg 5410896 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/93 (81%) Strand = Plus / Minus Query: 297 gacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcacatcata 356 ||||||||||| ||| | || |||| || ||| | ||||||||| ||||||||||| Sbjct: 4145460 gacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatc 4145401 Query: 357 acggcggtgatcgggtccggcgtgctgtcgctg 389 || || || ||||| |||||||||||||||||| Sbjct: 4145400 accgccgtcatcggctccggcgtgctgtcgctg 4145368 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/93 (81%) Strand = Plus / Plus Query: 297 gacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcacatcata 356 ||||||||||| ||| | || |||| || ||| | ||||||||| ||||||||||| Sbjct: 4120095 gacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatc 4120154 Query: 357 acggcggtgatcgggtccggcgtgctgtcgctg 389 || || || ||||| |||||||||||||||||| Sbjct: 4120155 accgccgtcatcggctccggcgtgctgtcgctg 4120187
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141053 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||||||||| ||||||||| || |||||||| | |||||||| |||| |||||||||| Sbjct: 79201 cagggacggtgtggacggcgacgtcgcacatcgtggcggcggtggtcggctccggcgtgc 79142 Query: 382 tgtcgctg 389 || ||||| Sbjct: 79141 tggcgctg 79134 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctgccctggg 396 ||||||||||| || || |||||||||||||| |||||||||||||| |||| Sbjct: 66521 gcgcacatcatcaccgccgtgatcgggtccggggtgctgtcgctgccgtggg 66572
>dbj|AK121636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051N12, full insert sequence Length = 1756 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 321 acagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtg 380 ||||| ||||||||||||||| || ||||| ||| || || ||||||||||| |||||| Sbjct: 135 acaggaacggtatggacggcgacgacgcacgccatcaccgccgtgatcgggtcaggcgtg 194 Query: 381 ctgtcgctgcc 391 ||| ||||||| Sbjct: 195 ctggcgctgcc 205
>dbj|AK119529.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C05, full insert sequence Length = 1598 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 321 acagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtg 380 ||||| ||||||||||||||| || ||||| ||| || || ||||||||||| |||||| Sbjct: 74 acaggaacggtatggacggcgacgacgcacgccatcaccgccgtgatcgggtcaggcgtg 133 Query: 381 ctgtcgctgcc 391 ||| ||||||| Sbjct: 134 ctggcgctgcc 144
>dbj|AK069508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020L23, full insert sequence Length = 1819 Score = 61.9 bits (31), Expect = 1e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 323 agggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgct 382 ||||||||| ||||||||| || |||||||| | |||||||| |||| ||||||||||| Sbjct: 146 agggacggtgtggacggcgacgtcgcacatcgtggcggcggtggtcggctccggcgtgct 205 Query: 383 gtcgctg 389 | ||||| Sbjct: 206 ggcgctg 212
>dbj|AK065286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M14, full insert sequence Length = 1618 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 321 acagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtg 380 ||||| ||||||||||||||| || ||||| ||| || || ||||||||||| |||||| Sbjct: 135 acaggaacggtatggacggcgacgacgcacgccatcaccgccgtgatcgggtcaggcgtg 194 Query: 381 ctgtcgctgcc 391 ||| ||||||| Sbjct: 195 ctggcgctgcc 205
>gb|AY109232.1| Zea mays PCO115240 mRNA sequence Length = 1756 Score = 61.9 bits (31), Expect = 1e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 321 acagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtg 380 ||||||||||| ||||||||| || ||||| ||| || || ||||| || ||||||||| Sbjct: 113 acagggacggtgtggacggcgacgacgcacgccatcaccgccgtgataggctccggcgtg 172 Query: 381 ctgtcgctgccctgg 395 ||| ||||||||||| Sbjct: 173 ctggcgctgccctgg 187
>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10, complete sequence Length = 140282 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||| ||||||||||||| | |||| ||||| | |||||||||||||| |||||||||| Sbjct: 16967 caggcacggtatggacggagacggcacacattgttacggcggtgatcggctccggcgtgc 17026 Query: 382 tg 383 || Sbjct: 17027 tg 17028
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||| ||||||||| ||||| |||| ||||| | |||||||||||||| |||||||||| Sbjct: 54840 caggcacggtatgggcggcgacggcacacattgttacggcggtgatcggctccggcgtgc 54899 Query: 382 tg 383 || Sbjct: 54900 tg 54901
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 322 cagggacggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgc 381 |||| ||||||||||||| | |||| ||||| | |||||||||||||| |||||||||| Sbjct: 89706 caggcacggtatggacggagacggcacacattgttacggcggtgatcggctccggcgtgc 89765 Query: 382 tg 383 || Sbjct: 89766 tg 89767
>ref|NM_190140.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1596 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 327 acggtatggacggcggcggcgcacatcataacggcggtgatcgggtccggcgtgctgtcg 386 ||||||||||||||| || ||||| ||| || || ||||||||||| ||||||||| || Sbjct: 262 acggtatggacggcgacgacgcacgccatcaccgccgtgatcgggtcaggcgtgctggcg 321 Query: 387 ctgcc 391 ||||| Sbjct: 322 ctgcc 326
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||||||||| | ||||||||| |||| |||||||||||||||||| Sbjct: 129589 gcgcacatcgtcacggcggtggtcggctccggcgtgctgtcgctg 129545
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||||||||| | ||||||||| |||| |||||||||||||||||| Sbjct: 25142 gcgcacatcgtcacggcggtggtcggctccggcgtgctgtcgctg 25098
>dbj|AK106762.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E07, full insert sequence Length = 1726 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||||||||| | ||||||||| |||| |||||||||||||||||| Sbjct: 273 gcgcacatcgtcacggcggtggtcggctccggcgtgctgtcgctg 317
>ref|XM_474206.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1410 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 |||||||| || || ||||||||||||| |||||||||| ||||| Sbjct: 94 gcgcacattatcaccgcggtgatcgggtgcggcgtgctggcgctg 138
>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23, complete sequence Length = 149353 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 |||||||| || || ||||||||||||| |||||||||| ||||| Sbjct: 127026 gcgcacattatcaccgcggtgatcgggtgcggcgtgctggcgctg 127070
>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02, complete sequence Length = 153623 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 |||||||| || || ||||||||||||| |||||||||| ||||| Sbjct: 46409 gcgcacattatcaccgcggtgatcgggtgcggcgtgctggcgctg 46453
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 |||||||| || || ||||||||||||| |||||||||| ||||| Sbjct: 127144 gcgcacattatcaccgcggtgatcgggtgcggcgtgctggcgctg 127188
>dbj|AK106090.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B07, full insert sequence Length = 1715 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/93 (81%) Strand = Plus / Plus Query: 297 gacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcacatcata 356 ||||||||||| ||| | || |||| || ||| | ||||||||| ||||||||||| Sbjct: 174 gacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatc 233 Query: 357 acggcggtgatcgggtccggcgtgctgtcgctg 389 || || || ||||| |||||||||||||||||| Sbjct: 234 accgccgtcatcggctccggcgtgctgtcgctg 266
>dbj|AK105784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G09, full insert sequence Length = 1773 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/93 (81%) Strand = Plus / Plus Query: 297 gacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcacatcata 356 ||||||||||| ||| | || |||| || ||| | ||||||||| ||||||||||| Sbjct: 152 gacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatc 211 Query: 357 acggcggtgatcgggtccggcgtgctgtcgctg 389 || || || ||||| |||||||||||||||||| Sbjct: 212 accgccgtcatcggctccggcgtgctgtcgctg 244
>dbj|AK099164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073O03, full insert sequence Length = 1709 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/93 (81%) Strand = Plus / Plus Query: 297 gacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcacatcata 356 ||||||||||| ||| | || |||| || ||| | ||||||||| ||||||||||| Sbjct: 177 gacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatc 236 Query: 357 acggcggtgatcgggtccggcgtgctgtcgctg 389 || || || ||||| |||||||||||||||||| Sbjct: 237 accgccgtcatcggctccggcgtgctgtcgctg 269
>dbj|AK061470.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D07, full insert sequence Length = 1797 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/93 (81%) Strand = Plus / Plus Query: 297 gacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcacatcata 356 ||||||||||| ||| | || |||| || ||| | ||||||||| ||||||||||| Sbjct: 154 gacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatc 213 Query: 357 acggcggtgatcgggtccggcgtgctgtcgctg 389 || || || ||||| |||||||||||||||||| Sbjct: 214 accgccgtcatcggctccggcgtgctgtcgctg 246
>dbj|AK061448.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-E03, full insert sequence Length = 1725 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/93 (81%) Strand = Plus / Plus Query: 297 gacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcacatcata 356 ||||||||||| ||| | || |||| || ||| | ||||||||| ||||||||||| Sbjct: 175 gacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatc 234 Query: 357 acggcggtgatcgggtccggcgtgctgtcgctg 389 || || || ||||| |||||||||||||||||| Sbjct: 235 accgccgtcatcggctccggcgtgctgtcgctg 267
>dbj|AK061444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C11, full insert sequence Length = 1662 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/93 (81%) Strand = Plus / Plus Query: 297 gacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcacatcata 356 ||||||||||| ||| | || |||| || ||| | ||||||||| ||||||||||| Sbjct: 152 gacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatc 211 Query: 357 acggcggtgatcgggtccggcgtgctgtcgctg 389 || || || ||||| |||||||||||||||||| Sbjct: 212 accgccgtcatcggctccggcgtgctgtcgctg 244
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Minus Query: 345 gcgcacatcataacggcggtgatcgggtccggcgtgctgtcgctg 389 ||||||||||| || || || ||||| |||||||||||||||||| Sbjct: 87821 gcgcacatcatcaccgccgtcatcggctccggcgtgctgtcgctg 87777 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/93 (81%) Strand = Plus / Plus Query: 297 gacgacgacggcagggagaggaggacagggacggtatggacggcggcggcgcacatcata 356 ||||||||||| ||| | || |||| || ||| | ||||||||| ||||||||||| Sbjct: 62504 gacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatc 62563 Query: 357 acggcggtgatcgggtccggcgtgctgtcgctg 389 || || || ||||| |||||||||||||||||| Sbjct: 62564 accgccgtcatcggctccggcgtgctgtcgctg 62596
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 105645 Score = 46.1 bits (23), Expect = 0.086 Identities = 26/27 (96%) Strand = Plus / Minus Query: 357 acggcggtgatcgggtccggcgtgctg 383 |||||||||||||| |||||||||||| Sbjct: 82950 acggcggtgatcggctccggcgtgctg 82924
>dbj|AB092842.1| Gallus gallus gene for SOX2, complete cds Length = 49148 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Plus Query: 46 aagctgcaaggggggagagggaa 68 ||||||||||||||||||||||| Sbjct: 21851 aagctgcaaggggggagagggaa 21873
>gb|CP000145.1| Rhodobacter sphaeroides 2.4.1 plasmid B, complete sequence Length = 114178 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 182 accgaggccgaggaggagatcg 203 |||||||||||||||||||||| Sbjct: 71930 accgaggccgaggaggagatcg 71909
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 283 gcgagggcgacgtcgacgacgacggc 308 |||||||||||| ||||||||||||| Sbjct: 64964 gcgagggcgacggcgacgacgacggc 64989
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 361 cggtgatcgggtccggcgtgctgtcg 386 |||| ||||||||||||||||||||| Sbjct: 1107731 cggttatcgggtccggcgtgctgtcg 1107706
>ref|NM_121873.3| Arabidopsis thaliana phosphoric diester hydrolase/ transcription factor AT5G18680 mRNA, complete cds Length = 1474 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 caccaccaccacttctccttc 25 ||||||||||||||||||||| Sbjct: 28 caccaccaccacttctccttc 48
>ref|XM_467076.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1437 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 283 gcgagggcgacgtcgacgacgacggcagg 311 |||||| ||||| |||||||||||||||| Sbjct: 378 gcgaggacgacgacgacgacgacggcagg 350
>gb|AC105259.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B04, complete sequence Length = 95383 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 gggaggcggcggcaagggagaggcg 235 |||||||||||||||||| |||||| Sbjct: 39636 gggaggcggcggcaagggggaggcg 39612 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 gggaggcggcggcaagggagaggcg 235 |||||||||||||||||| |||||| Sbjct: 39605 gggaggcggcggcaagggggaggcg 39581
>ref|XM_544699.2| PREDICTED: Canis familiaris similar to cingulin-like 1 (LOC487574), mRNA Length = 3675 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 gaggccgaggaggagatcgac 205 ||||||||||||||||||||| Sbjct: 3418 gaggccgaggaggagatcgac 3438
>ref|XM_804868.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053506951.90) partial mRNA Length = 2751 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 gcggcggcgcacatcataacg 359 ||||||||||||||||||||| Sbjct: 179 gcggcggcgcacatcataacg 159
>gb|AC102803.3| Homo sapiens chromosome 18, clone RP11-454J3, complete sequence Length = 212842 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 cacttctccttccttccacca 34 ||||||||||||||||||||| Sbjct: 77975 cacttctccttccttccacca 77955
>gb|AY029402.1| Danio rerio cell adhesion molecule NCAM mRNA, complete cds Length = 2726 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 accacaccaccaccacttctc 21 ||||||||||||||||||||| Sbjct: 2682 accacaccaccaccacttctc 2702
>gb|AF027207.2|AF027207 Homo sapiens chromosome 21 clone cosmid D13C2 map 21q22.2, complete sequence Length = 37773 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 cacttctccttccttccacca 34 ||||||||||||||||||||| Sbjct: 28052 cacttctccttccttccacca 28032
>ref|NM_131202.1| Danio rerio neural cell adhesion molecule 1 (ncam1), mRNA Length = 2726 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 accacaccaccaccacttctc 21 ||||||||||||||||||||| Sbjct: 2682 accacaccaccaccacttctc 2702
>gb|AC093639.5| Homo sapiens BAC clone RP11-315C24 from 2, complete sequence Length = 153053 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 cacttctccttccttccacca 34 ||||||||||||||||||||| Sbjct: 27639 cacttctccttccttccacca 27659
>gb|AC064864.4| Homo sapiens BAC clone RP11-407M6 from 2, complete sequence Length = 183687 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 cacttctccttccttccacca 34 ||||||||||||||||||||| Sbjct: 78518 cacttctccttccttccacca 78498
>gb|AY178349.1| Trifolium repens microsatellite agr1066 sequence Length = 778 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 ggacggcggcggcgcacatca 354 ||||||||||||||||||||| Sbjct: 256 ggacggcggcggcgcacatca 236
>gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis thaliana Clone T1A4 From Chromosome V, complete sequence Length = 85746 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 caccaccaccacttctccttc 25 ||||||||||||||||||||| Sbjct: 31839 caccaccaccacttctccttc 31859
>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:P0491E01 Length = 136150 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 283 gcgagggcgacgtcgacgacgacggcagg 311 |||||| ||||| |||||||||||||||| Sbjct: 2449 gcgaggacgacgacgacgacgacggcagg 2477
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0656E03 Length = 181786 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 ggcgacgtcgacgacgacggc 308 ||||||||||||||||||||| Sbjct: 152525 ggcgacgtcgacgacgacggc 152545
>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0012J10 Length = 132375 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 283 gcgagggcgacgtcgacgacgacggcagg 311 |||||| ||||| |||||||||||||||| Sbjct: 92938 gcgaggacgacgacgacgacgacggcagg 92966
>dbj|BS000196.1| Pan troglodytes chromosome 22 clone:RP43-025M10, map 22, complete sequences Length = 196989 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 cacttctccttccttccacca 34 ||||||||||||||||||||| Sbjct: 9778 cacttctccttccttccacca 9758
>dbj|BS000195.1| Pan troglodytes chromosome 22 clone:PTB-014E11, map 22, complete sequences Length = 251753 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 cacttctccttccttccacca 34 ||||||||||||||||||||| Sbjct: 245797 cacttctccttccttccacca 245777
>dbj|AK099767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095B06, full insert sequence Length = 1437 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 283 gcgagggcgacgtcgacgacgacggcagg 311 |||||| ||||| |||||||||||||||| Sbjct: 378 gcgaggacgacgacgacgacgacggcagg 350
>emb|AJ229042.1|HS229042 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22, segment 2/3 Length = 348050 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 cacttctccttccttccacca 34 ||||||||||||||||||||| Sbjct: 320599 cacttctccttccttccacca 320619
>emb|AL163267.2|HS21C067 Homo sapiens chromosome 21 segment HS21C067 Length = 340000 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 cacttctccttccttccacca 34 ||||||||||||||||||||| Sbjct: 217478 cacttctccttccttccacca 217458
>dbj|AK061454.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G08, full insert sequence Length = 1153 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 283 gcgagggcgacgtcgacgacgacggcagg 311 |||||| ||||| |||||||||||||||| Sbjct: 93 gcgaggacgacgacgacgacgacggcagg 65
>ref|XM_482551.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1806 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 agggaggcggcggcaagggagagg 233 |||||||||||||| ||||||||| Sbjct: 221 agggaggcggcggcgagggagagg 198
>ref|XM_473404.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 957 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 cagcgagggcgacgtcgacgacgacggc 308 |||||| ||||||| ||||||||||||| Sbjct: 321 cagcgatggcgacgacgacgacgacggc 294
>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08, complete sequence Length = 115026 Score = 40.1 bits (20), Expect = 5.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 199 gatcgacgcgaagggaggcggcggcaagggag 230 ||||||||| |||| ||||||||||||||||| Sbjct: 111304 gatcgacgc-aaggcaggcggcggcaagggag 111274
>ref|XM_423398.1| PREDICTED: Gallus gallus similar to cingulin (LOC425665), mRNA Length = 3681 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 gaggccgaggaggagatcga 204 |||||||||||||||||||| Sbjct: 3415 gaggccgaggaggagatcga 3434
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gacgtcgacgacgacggcag 310 |||||||||||||||||||| Sbjct: 949963 gacgtcgacgacgacggcag 949982
>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12, complete sequence Length = 119909 Score = 40.1 bits (20), Expect = 5.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 199 gatcgacgcgaagggaggcggcggcaagggag 230 ||||||||| |||| ||||||||||||||||| Sbjct: 25496 gatcgacgc-aaggcaggcggcggcaagggag 25466
>gb|AC147056.3| Pan troglodytes BAC clone RP43-153F5 from 7, complete sequence Length = 167738 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cacttctccttccttccacc 33 |||||||||||||||||||| Sbjct: 75691 cacttctccttccttccacc 75710
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cgaggccgaggaggagatcg 203 |||||||||||||||||||| Sbjct: 167274 cgaggccgaggaggagatcg 167255
>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence Length = 141787 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 cagcgagggcgacgtcgacgacgacggc 308 |||||| ||||||| ||||||||||||| Sbjct: 107973 cagcgatggcgacgacgacgacgacggc 107946
>gb|AC005521.1| Homo sapiens PAC clone RP5-1106E3 from 7, complete sequence Length = 136495 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cacttctccttccttccacc 33 |||||||||||||||||||| Sbjct: 23617 cacttctccttccttccacc 23598
>emb|AL137794.5| Human DNA sequence from clone RP5-1070A16 on chromosome 1p21.2-22.2 Contains a novel gene, complete sequence Length = 137895 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cacttctccttccttccacc 33 |||||||||||||||||||| Sbjct: 59275 cacttctccttccttccacc 59256
>emb|X99488.1|DMCALNEX D.melanogaster mRNA for calnexin Length = 2107 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 ccgaggccgaggaggagatcgacg 206 |||||||||||||||||| ||||| Sbjct: 1855 ccgaggccgaggaggagagcgacg 1878
>emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence Length = 133967 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 cagcgagggcgacgtcgacgacgacggc 308 |||||| ||||||| ||||||||||||| Sbjct: 24531 cagcgatggcgacgacgacgacgacggc 24504
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cgaggccgaggaggagatcg 203 |||||||||||||||||||| Sbjct: 1017323 cgaggccgaggaggagatcg 1017342
>gb|AE006002.1| Caulobacter crescentus CB15 section 328 of 359 of the complete genome Length = 14142 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 tatggacggcggcggcgcacatca 354 ||||||||||||||||| |||||| Sbjct: 4386 tatggacggcggcggcgaacatca 4363
>dbj|AK090562.1| Homo sapiens cDNA FLJ33243 fis, clone ASTRO2004217 Length = 2264 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cacttctccttccttccacc 33 |||||||||||||||||||| Sbjct: 2126 cacttctccttccttccacc 2145
>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence Length = 48498 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 212 ggaggcggcggcaagggagaggcg 235 ||||||||||||||||||| |||| Sbjct: 912 ggaggcggcggcaagggagcggcg 889
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 212 ggaggcggcggcaagggagaggcg 235 ||||||||||||||||||| |||| Sbjct: 148425 ggaggcggcggcaagggagcggcg 148402
>ref|NM_170407.2| Drosophila melanogaster Calnexin 99A CG11958-RA, transcript variant A (Cnx99A), mRNA Length = 2626 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 ccgaggccgaggaggagatcgacg 206 |||||||||||||||||| ||||| Sbjct: 1832 ccgaggccgaggaggagagcgacg 1855
>ref|NM_057809.4| Drosophila melanogaster Calnexin 99A CG11958-RB, transcript variant B (Cnx99A), mRNA Length = 2650 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 ccgaggccgaggaggagatcgacg 206 |||||||||||||||||| ||||| Sbjct: 1856 ccgaggccgaggaggagagcgacg 1879
>gb|AY089406.1| Drosophila melanogaster AT22968 full insert cDNA Length = 1880 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 ccgaggccgaggaggagatcgacg 206 |||||||||||||||||| ||||| Sbjct: 1614 ccgaggccgaggaggagagcgacg 1637
>gb|AC009660.15| Homo sapiens chromosome 15, clone RP11-424J10, complete sequence Length = 214166 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 caccaccacttctccttcct 27 |||||||||||||||||||| Sbjct: 92310 caccaccacttctccttcct 92329
>emb|AL670884.7| Mouse DNA sequence from clone RP23-372M15 on chromosome 4, complete sequence Length = 143363 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 caccaccacttctccttcct 27 |||||||||||||||||||| Sbjct: 43490 caccaccacttctccttcct 43471
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ggcgacgtcgacgacgacgg 307 |||||||||||||||||||| Sbjct: 9773745 ggcgacgtcgacgacgacgg 9773726
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 agggaggcggcggcaagggagagg 233 |||||||||||||| ||||||||| Sbjct: 21035982 agggaggcggcggcgagggagagg 21035959
>gb|AF321921.1|AF321921 Mus musculus BRAP2 variant 2 mRNA, complete cds Length = 3862 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 cgcagcgagggcgacgtcga 298 |||||||||||||||||||| Sbjct: 79 cgcagcgagggcgacgtcga 60
>gb|AC116104.7| Mus musculus chromosome 5, clone RP23-18K20, complete sequence Length = 210459 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 cgcagcgagggcgacgtcga 298 |||||||||||||||||||| Sbjct: 130764 cgcagcgagggcgacgtcga 130783
>ref|NM_213898.1| Sus scrofa short-chain acyl-CoA dehydrogenase (ACADS), mRNA Length = 1899 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gggagaggcgcggagccatg 245 |||||||||||||||||||| Sbjct: 1302 gggagaggcgcggagccatg 1321
>gb|AC113608.3| Homo sapiens BAC clone RP11-120J4 from 2, complete sequence Length = 89554 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cacttctccttccttccacc 33 |||||||||||||||||||| Sbjct: 82188 cacttctccttccttccacc 82169
>gb|BT003487.1| Drosophila melanogaster SD17909 full insert cDNA Length = 2102 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 ccgaggccgaggaggagatcgacg 206 |||||||||||||||||| ||||| Sbjct: 1832 ccgaggccgaggaggagagcgacg 1855
>gb|AC091947.4| Homo sapiens chromosome 5 clone RP11-367F9, complete sequence Length = 170063 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cacttctccttccttccacc 33 |||||||||||||||||||| Sbjct: 135410 cacttctccttccttccacc 135391
>gb|BT003313.1| Drosophila melanogaster GH03249 full insert cDNA Length = 2078 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 ccgaggccgaggaggagatcgacg 206 |||||||||||||||||| ||||| Sbjct: 1811 ccgaggccgaggaggagagcgacg 1834
>gb|AC109491.3| Homo sapiens chromosome 5 clone RP11-727F19, complete sequence Length = 127489 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cacttctccttccttccacc 33 |||||||||||||||||||| Sbjct: 97458 cacttctccttccttccacc 97439
>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0431A03 Length = 149500 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 agggaggcggcggcaagggagagg 233 |||||||||||||| ||||||||| Sbjct: 102157 agggaggcggcggcgagggagagg 102134
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ggcgacgtcgacgacgacgg 307 |||||||||||||||||||| Sbjct: 3147552 ggcgacgtcgacgacgacgg 3147571
>dbj|AP005863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0040N23 Length = 101061 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ggcgacgtcgacgacgacgg 307 |||||||||||||||||||| Sbjct: 46164 ggcgacgtcgacgacgacgg 46145
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 agggaggcggcggcaagggagagg 233 |||||||||||||| ||||||||| Sbjct: 7192 agggaggcggcggcgagggagagg 7169
>dbj|AK119426.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H08, full insert sequence Length = 3395 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 agggaggcggcggcaagggagagg 233 |||||||||||||| ||||||||| Sbjct: 221 agggaggcggcggcgagggagagg 198
>dbj|AK069775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028H13, full insert sequence Length = 703 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ggcgacgtcgacgacgacgg 307 |||||||||||||||||||| Sbjct: 178 ggcgacgtcgacgacgacgg 159
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 tcccgcgcagcgagggcgac 293 |||||||||||||||||||| Sbjct: 2493309 tcccgcgcagcgagggcgac 2493290
>gb|AC009888.1|AC009888 Drosophila melanogaster, chromosome 3R, region 99A7-99B5, BAC clones BACR48K01 and BACR48O23, complete sequence Length = 311043 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 ccgaggccgaggaggagatcgacg 206 |||||||||||||||||| ||||| Sbjct: 31426 ccgaggccgaggaggagagcgacg 31403
>gb|AE003769.2| Drosophila melanogaster chromosome 3R, section 107 of 118 of the complete sequence Length = 234024 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 ccgaggccgaggaggagatcgacg 206 |||||||||||||||||| ||||| Sbjct: 40334 ccgaggccgaggaggagagcgacg 40311
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cgtcgacgacgacggcaggg 312 |||||||||||||||||||| Sbjct: 292890 cgtcgacgacgacggcaggg 292909
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 cgacgtcgacgacgacggca 309 |||||||||||||||||||| Sbjct: 745611 cgacgtcgacgacgacggca 745592 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ggccgaggaggagatcgacg 206 |||||||||||||||||||| Sbjct: 480023 ggccgaggaggagatcgacg 480004
>dbj|AB023410.1| Acanthamoeba castellanii gene for cyst specific protein CSP 21, complete cds Length = 2729 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ggccgaggaggagatcgacg 206 |||||||||||||||||||| Sbjct: 633 ggccgaggaggagatcgacg 614
>dbj|D89477.1| Porcine mRNA for short-chain acyl-CoA dehydrogenase, complete cds Length = 1899 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gggagaggcgcggagccatg 245 |||||||||||||||||||| Sbjct: 1302 gggagaggcgcggagccatg 1321 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,632,300 Number of Sequences: 3902068 Number of extensions: 4632300 Number of successful extensions: 106024 Number of sequences better than 10.0: 144 Number of HSP's better than 10.0 without gapping: 151 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 102618 Number of HSP's gapped (non-prelim): 3401 length of query: 396 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 374 effective length of database: 17,147,199,772 effective search space: 6413052714728 effective search space used: 6413052714728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
