ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62h02 |
|---|---|
| Clone Library Name | barley_pub |
>NIP7_RAT (Q9WV50) 60S ribosome subunit biogenesis protein NIP7 homolog| (PEachy) (KD93) Length = 180 Score = 88.6 bits (218), Expect = 3e-18 Identities = 47/101 (46%), Positives = 63/101 (62%) Frame = +3 Query: 108 MRPLDEKETTMVFEKLFMFTGPNLKHLLDRPSVEGPDPESGRYCLRLHKNRVFYASESLV 287 MRPL E+ET ++FEK+ + G NL+ L+DRP G YC RLH +RV+Y SE ++ Sbjct: 1 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMIL 52 Query: 288 RRATAVSRTRLASVGTPIGKFTHGGAFHLTVHALDLLAAHA 410 + A +S +L S+GT GKFT F L V ALD LA +A Sbjct: 53 KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYA 93
>NIP7_HUMAN (Q9Y221) 60S ribosome subunit biogenesis protein NIP7 homolog| (KD93) Length = 180 Score = 88.6 bits (218), Expect = 3e-18 Identities = 47/101 (46%), Positives = 63/101 (62%) Frame = +3 Query: 108 MRPLDEKETTMVFEKLFMFTGPNLKHLLDRPSVEGPDPESGRYCLRLHKNRVFYASESLV 287 MRPL E+ET ++FEK+ + G NL+ L+DRP G YC RLH +RV+Y SE ++ Sbjct: 1 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIM 52 Query: 288 RRATAVSRTRLASVGTPIGKFTHGGAFHLTVHALDLLAAHA 410 + A +S +L S+GT GKFT F L V ALD LA +A Sbjct: 53 KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYA 93
>NIP7_MOUSE (Q9CXK8) 60S ribosome subunit biogenesis protein NIP7 homolog| (PEachy) (KD93) Length = 180 Score = 88.2 bits (217), Expect = 4e-18 Identities = 47/101 (46%), Positives = 63/101 (62%) Frame = +3 Query: 108 MRPLDEKETTMVFEKLFMFTGPNLKHLLDRPSVEGPDPESGRYCLRLHKNRVFYASESLV 287 MRPL E+ET ++FEK+ + G NL+ L+DRP G YC RLH +RV+Y SE ++ Sbjct: 1 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMML 52 Query: 288 RRATAVSRTRLASVGTPIGKFTHGGAFHLTVHALDLLAAHA 410 + A +S +L S+GT GKFT F L V ALD LA +A Sbjct: 53 KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYA 93
>NIP7_YEAST (Q08962) 60S ribosome subunit biogenesis protein NIP7| Length = 181 Score = 72.0 bits (175), Expect = 3e-13 Identities = 40/101 (39%), Positives = 59/101 (58%) Frame = +3 Query: 108 MRPLDEKETTMVFEKLFMFTGPNLKHLLDRPSVEGPDPESGRYCLRLHKNRVFYASESLV 287 MR L E+ET +VFEKL + G N+ L+D + + RL K+RV+Y + + Sbjct: 1 MRQLTEEETKVVFEKLAGYIGRNISFLVDNKELP--------HVFRLQKDRVYYVPDHVA 52 Query: 288 RRATAVSRTRLASVGTPIGKFTHGGAFHLTVHALDLLAAHA 410 + AT+V+R L S+G +GKFT G F L + +L +LA HA Sbjct: 53 KLATSVARPNLMSLGICLGKFTKTGKFRLHITSLTVLAKHA 93
>PIN6_ARATH (Q9SQH6) Probable auxin efflux carrier component 6 (AtPIN6)| Length = 570 Score = 30.8 bits (68), Expect = 0.80 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 14/68 (20%) Frame = +3 Query: 201 SVEGPDP--------ESGRYCLRLHKN------RVFYASESLVRRATAVSRTRLASVGTP 338 S++G DP +GR LR+ ++ V +S L RA+ +S + SV TP Sbjct: 184 SLDGMDPLRTETETDVNGRIRLRIRRSVSSVPDSVMSSSLCLTPRASNLSNAEIFSVNTP 243 Query: 339 IGKFTHGG 362 +F HGG Sbjct: 244 NNRFFHGG 251
>PWP2_YEAST (P25635) Periodic tryptophan protein 2 (U3 small nucleolar| RNA-associated protein 1) (U3 snoRNA-associated protein 1) Length = 923 Score = 30.4 bits (67), Expect = 1.0 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +3 Query: 231 RYCLRLHKNRVFYASESLVRRATAVSRTRLASVGTPIGKF 350 +Y R+ K FYA+++ V+ T TRL +VG G+F Sbjct: 245 KYSWRITKKHFFYANQAKVKCVTFHPATRLLAVGFTSGEF 284
>PREX1_HUMAN (Q8TCU6) Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac| exchanger 1 protein (P-Rex1 protein) Length = 1659 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +3 Query: 195 RPSVEGPDPESGRYCLRLHKNRVFYASESLVRRATAVSRTRLASVGTPIGKFTHGGAF 368 +PS+ G DPE G H N + Y + A + A+ G P G+ H G+F Sbjct: 999 KPSLIGLDPEQG------HLNPMSYTQHCITTMAAPSWKCLPAAEGDPQGQGLHDGSF 1050
>HYPF_RHOCA (Q02987) Carbamoyltransferase hypF (EC 2.1.3.-) (Carbamoyl| phosphate-converting enzyme hypF) ([NiFe]-hydrogenase maturation factor hypF) (Hydrogenase maturation protein hypF) Length = 739 Score = 28.1 bits (61), Expect = 5.2 Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Frame = +3 Query: 102 CAMRPLDEKETTMVFEKLFMFTGPNLKHLLDRPSVEG---PDPESGRYCLRLHKNRVFYA 272 C MR E E M E L TGP + D P V G P P +RV +A Sbjct: 606 CPMRQSYEGEAAMRLESLAADTGP----VPDLPCVGGAIDPAPLFQLLAAGERPDRVAHA 661 Query: 273 SESLVRRATAVSRTRLASVGTPIGKFTHGGAF 368 + + +A A RL G GG F Sbjct: 662 LHASLAQAFAAEARRLIEAGQAEAVALTGGCF 693
>JIP4_HUMAN (O60271) C-jun-amino-terminal kinase-interacting protein 4| (JNK-interacting protein 4) (JIP-4) (JNK-associated leucine-zipper protein) (JLP) (Sperm-associated antigen 9) (Mitogen-activated protein kinase 8-interacting protein 4) (Human lung ca Length = 1321 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +3 Query: 96 LPCAMRPLDEKETTMVFEKLFMFTGPNL 179 +P +RPLDEK+T+M KL+ G NL Sbjct: 671 VPVYLRPLDEKDTSM---KLWCAVGVNL 695
>PE2R1_HUMAN (P34995) Prostaglandin E2 receptor, EP1 subtype (Prostanoid EP1| receptor) (PGE receptor, EP1 subtype) Length = 402 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -3 Query: 259 RFLWRRRQ*RPDSGSGPSTEGRSRRCFRLGPVNMKSFSKTIVVSFSS 119 R WRRR RP SGP + RR GP + + S + + S S+ Sbjct: 231 RARWRRRSRRPPPASGPDSR---RRWGAHGPRSASASSASSIASAST 274
>AROE_SYNEL (Q8DLA6) Shikimate dehydrogenase (EC 1.1.1.25)| Length = 286 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +3 Query: 291 RATAVSRTRLASVGTPIGKFTHGGAFHLTVHALDLLAAHA 410 RAT +++ L TPIG H GA LT L L A A Sbjct: 182 RATCLAKISLVVNTTPIGMSPHTGATPLTAEDLAKLPATA 221
>ACON_STAES (Q8CPC2) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Frame = +3 Query: 105 AMRPLDEKETTMVFEKLFMFTGPNLKH--LLDRPSVEGPDPESGRYC 239 A+R +E V K F GP ++H L DR ++ PE G C Sbjct: 268 ALRVTEELRKKGVVGKFVEFFGPGVQHLPLADRATIANMAPEYGATC 314
>ACON_STAEQ (Q5HPJ0) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Frame = +3 Query: 105 AMRPLDEKETTMVFEKLFMFTGPNLKH--LLDRPSVEGPDPESGRYC 239 A+R +E V K F GP ++H L DR ++ PE G C Sbjct: 268 ALRVTEELRKKGVVGKFVEFFGPGVQHLPLADRATIANMAPEYGATC 314
>ACSA_PASMU (Q9CMW1) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) Length = 653 Score = 27.3 bits (59), Expect = 8.8 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 11/54 (20%) Frame = +3 Query: 213 PDPESGRYCLRLHKNRVFYASESLVRRATAV-----------SRTRLASVGTPI 341 PDP ++ HK VFY S +L+R T + S L SVG PI Sbjct: 340 PDPGRIWRMIQRHKINVFYTSPTLIRSLTRLGDHIPNKYDLSSLRLLGSVGEPI 393 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,725,539 Number of Sequences: 219361 Number of extensions: 476452 Number of successful extensions: 1549 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1536 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1546 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
