>YDCU_ECOLI (P77156) Inner membrane ABC transporter permease protein ydcU|
          Length = 313

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +2

Query: 155 PGALRQRAADIGARSRQLQSRRLWTYALTFGCAAGFVVTVLATIQDQLV 301
           P +L Q +AD+GAR RQ     +   A+  G AAG + T   T+ D +V
Sbjct: 211 PPSLLQASADLGARPRQTFRYVVLPLAIP-GIAAGSIFTFSLTLGDFIV 258

>YCF4_CHAGL (Q8M9X4) Photosystem I assembly protein ycf4|
          Length = 184

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 185 IGARSRQLQSRRLWTYALTFGCAAGFVVTVLATIQDQLVFYLTPTDAL 328
           IGAR     S   W   +  G    F+V V + +Q  +VF+L+ +D L
Sbjct: 14  IGARRL---SNYFWATVVFLGSLGFFIVGVSSYLQKNIVFFLSASDIL 58

>HLYB_PROVU (P11599) Alpha-hemolysin translocation ATP-binding protein hlyB|
          Length = 707

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +2

Query: 209 QSRRLWTYALTFGCAAGFVVTVLATIQDQ 295
           Q   +W   L    AAGF VTVLATI  Q
Sbjct: 351 QMTNIWDKQLAGYVAAGFKVTVLATIGQQ 379

>HLYB_ECOL6 (Q8FDZ8) Alpha-hemolysin translocation ATP-binding protein hlyB|
          Length = 707

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +2

Query: 209 QSRRLWTYALTFGCAAGFVVTVLATIQDQ 295
           Q   +W   L    AAGF VTVLATI  Q
Sbjct: 351 QMTNIWDKQLAGYVAAGFKVTVLATIGQQ 379

>HLYBP_ECOLI (P08716) Alpha-hemolysin translocation ATP-binding protein hlyB|
          Length = 707

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +2

Query: 209 QSRRLWTYALTFGCAAGFVVTVLATIQDQ 295
           Q   +W   L    AAGF VTVLATI  Q
Sbjct: 351 QMTNIWDKQLAGYVAAGFKVTVLATIGQQ 379

>HLYBC_ECOLI (P10089) Alpha-hemolysin translocation ATP-binding protein hlyB|
          Length = 707

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +2

Query: 209 QSRRLWTYALTFGCAAGFVVTVLATIQDQ 295
           Q   +W   L    AAGF VTVLATI  Q
Sbjct: 351 QMTNIWDKQLAGYVAAGFKVTVLATIGQQ 379

>HLYB3_ECOLI (Q47258) Alpha-hemolysin translocation ATP-binding protein hlyB|
          Length = 707

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +2

Query: 209 QSRRLWTYALTFGCAAGFVVTVLATIQDQ 295
           Q   +W   L    AAGF VTVLATI  Q
Sbjct: 351 QMTNIWDKQLAGYVAAGFKVTVLATIGQQ 379


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.298    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,846,596
Number of Sequences: 219361
Number of extensions: 234771
Number of successful extensions: 408
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)