ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62h01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197616.1| Oryza sativa (japonica cultivar-group) putative cytochrome c-type biogenesis protein (OSJNBa0001O14.23), mRNA Length = 804 Score = 240 bits (121), Expect = 2e-60 Identities = 154/165 (93%) Strand = Plus / Plus Query: 180 cggacatcggcgcgcggtcgcggcagctgcagagccggcgcctctggacctacgcgctca 239 |||||||||| |||||| ||||||||||||||||| |||| || ||||| |||||||||| Sbjct: 197 cggacatcggggcgcgggcgcggcagctgcagagcaggcggctgtggacgtacgcgctca 256 Query: 240 ccttcggctgcgcggccgggttcgtggtcaccgtgctcgccacgatacaggaccagctcg 299 ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 257 ccttcgggtgcgcggccgggttcgtggtcaccgtgctcgccacgttccaggaccagctcg 316 Query: 300 tcttctacctcacccccaccgacgcgctcgcgcgcttcgccaccg 344 |||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 317 tcttctacctcaccccgaccgacgcgctcgcgcgctacgccaccg 361
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 240 bits (121), Expect = 2e-60 Identities = 154/165 (93%) Strand = Plus / Plus Query: 180 cggacatcggcgcgcggtcgcggcagctgcagagccggcgcctctggacctacgcgctca 239 |||||||||| |||||| ||||||||||||||||| |||| || ||||| |||||||||| Sbjct: 75021 cggacatcggggcgcgggcgcggcagctgcagagcaggcggctgtggacgtacgcgctca 75080 Query: 240 ccttcggctgcgcggccgggttcgtggtcaccgtgctcgccacgatacaggaccagctcg 299 ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 75081 ccttcgggtgcgcggccgggttcgtggtcaccgtgctcgccacgttccaggaccagctcg 75140 Query: 300 tcttctacctcacccccaccgacgcgctcgcgcgcttcgccaccg 344 |||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 75141 tcttctacctcaccccgaccgacgcgctcgcgcgctacgccaccg 75185
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 240 bits (121), Expect = 2e-60 Identities = 154/165 (93%) Strand = Plus / Plus Query: 180 cggacatcggcgcgcggtcgcggcagctgcagagccggcgcctctggacctacgcgctca 239 |||||||||| |||||| ||||||||||||||||| |||| || ||||| |||||||||| Sbjct: 20812622 cggacatcggggcgcgggcgcggcagctgcagagcaggcggctgtggacgtacgcgctca 20812681 Query: 240 ccttcggctgcgcggccgggttcgtggtcaccgtgctcgccacgatacaggaccagctcg 299 ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 20812682 ccttcgggtgcgcggccgggttcgtggtcaccgtgctcgccacgttccaggaccagctcg 20812741 Query: 300 tcttctacctcacccccaccgacgcgctcgcgcgcttcgccaccg 344 |||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 20812742 tcttctacctcaccccgaccgacgcgctcgcgcgctacgccaccg 20812786
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 240 bits (121), Expect = 2e-60 Identities = 154/165 (93%) Strand = Plus / Plus Query: 180 cggacatcggcgcgcggtcgcggcagctgcagagccggcgcctctggacctacgcgctca 239 |||||||||| |||||| ||||||||||||||||| |||| || ||||| |||||||||| Sbjct: 20823886 cggacatcggggcgcgggcgcggcagctgcagagcaggcggctgtggacgtacgcgctca 20823945 Query: 240 ccttcggctgcgcggccgggttcgtggtcaccgtgctcgccacgatacaggaccagctcg 299 ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 20823946 ccttcgggtgcgcggccgggttcgtggtcaccgtgctcgccacgttccaggaccagctcg 20824005 Query: 300 tcttctacctcacccccaccgacgcgctcgcgcgcttcgccaccg 344 |||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 20824006 tcttctacctcaccccgaccgacgcgctcgcgcgctacgccaccg 20824050
>dbj|AK103222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123A02, full insert sequence Length = 1165 Score = 236 bits (119), Expect = 4e-59 Identities = 152/163 (93%) Strand = Plus / Plus Query: 180 cggacatcggcgcgcggtcgcggcagctgcagagccggcgcctctggacctacgcgctca 239 |||||||||| |||||| ||||||||||||||||| |||| || ||||| |||||||||| Sbjct: 307 cggacatcggggcgcgggcgcggcagctgcagagcaggcggctgtggacgtacgcgctca 366 Query: 240 ccttcggctgcgcggccgggttcgtggtcaccgtgctcgccacgatacaggaccagctcg 299 ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 367 ccttcgggtgcgcggccgggttcgtggtcaccgtgctcgccacgttccaggaccagctcg 426 Query: 300 tcttctacctcacccccaccgacgcgctcgcgcgcttcgccac 342 |||||||||||||||| ||||||||||||||||||| |||||| Sbjct: 427 tcttctacctcaccccgaccgacgcgctcgcgcgctacgccac 469
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 161 gccttgcggcagcgcgccgcggacatcg 188 |||||||||||||||||| ||||||||| Sbjct: 84460 gccttgcggcagcgcgccccggacatcg 84487
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 cccgatccccgccgcgcgcgcc 88 |||||||||||||||||||||| Sbjct: 1904262 cccgatccccgccgcgcgcgcc 1904283
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 tcggctgcgcggccgggttcgt 264 |||||||||||||||||||||| Sbjct: 3546264 tcggctgcgcggccgggttcgt 3546243
>gb|AF322918.1| Zea mays HDA1 mRNA, complete cds Length = 2601 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 59 accccgaccccgatccccgccg 80 |||||||||||||||||||||| Sbjct: 66 accccgaccccgatccccgccg 87
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 109 cgccctccagcccgcgcgcttc 130 |||||||||||||||||||||| Sbjct: 887208 cgccctccagcccgcgcgcttc 887229
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 ccgccgcgcgcgccaccacct 95 ||||||||||||||||||||| Sbjct: 533507 ccgccgcgcgcgccaccacct 533487 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 ggcgggccgggccgggcgccttgc 167 |||||| ||||||||||||||||| Sbjct: 1260031 ggcggggcgggccgggcgccttgc 1260054
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgaggcgggccgggccgggc 160 |||||||||||||||||||| Sbjct: 3352676 cgaggcgggccgggccgggc 3352657
>ref|NM_188046.1| Oryza sativa (japonica cultivar-group), Ozsa8466 predicted mRNA Length = 753 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 accgacgcgctcgcgcgcttcgcc 340 |||||||||||||| ||||||||| Sbjct: 187 accgacgcgctcgcccgcttcgcc 210
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 cgacgcgctcgcgcgcttcg 338 |||||||||||||||||||| Sbjct: 1947252 cgacgcgctcgcgcgcttcg 1947233
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 gaggcgggccgggccgggcg 161 |||||||||||||||||||| Sbjct: 2358386 gaggcgggccgggccgggcg 2358405
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gacgcgctcgcgcgcttcgc 339 |||||||||||||||||||| Sbjct: 2511480 gacgcgctcgcgcgcttcgc 2511499
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 cgacgaggcgggccgggccg 157 |||||||||||||||||||| Sbjct: 622159 cgacgaggcgggccgggccg 622140
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gacgcgctcgcgcgcttcgc 339 |||||||||||||||||||| Sbjct: 3673199 gacgcgctcgcgcgcttcgc 3673180
>gb|AC119846.14| Mus musculus chromosome 1, clone RP23-45A13, complete sequence Length = 242338 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gccgggcgccttgcggcagc 173 |||||||||||||||||||| Sbjct: 106016 gccgggcgccttgcggcagc 106035
>gb|AY283624.1| Uncultured bacterium clone I2 integron IntI gene, partial cds Length = 482 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cgatccccgccgcgcgcgcc 88 |||||||||||||||||||| Sbjct: 349 cgatccccgccgcgcgcgcc 330
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ggcgggccgggccgggcgcc 163 |||||||||||||||||||| Sbjct: 77577 ggcgggccgggccgggcgcc 77558
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 catcggcgcgcggtcgcggc 203 |||||||||||||||||||| Sbjct: 981376 catcggcgcgcggtcgcggc 981357
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 cgacgcgctcgcgcgcttcg 338 |||||||||||||||||||| Sbjct: 1717074 cgacgcgctcgcgcgcttcg 1717093
>emb|Z48053.1|BHV130KB Bovine herpesvirus type 1 (Cooper) DNA (30 kb) Length = 30000 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ggcgggccgggccgggcgcc 163 |||||||||||||||||||| Sbjct: 10678 ggcgggccgggccgggcgcc 10659
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gacgcgctcgcgcgcttcgc 339 |||||||||||||||||||| Sbjct: 3414289 gacgcgctcgcgcgcttcgc 3414270
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 aggcgggccgggccgggcgc 162 |||||||||||||||||||| Sbjct: 143319 aggcgggccgggccgggcgc 143338
>emb|AJ719811.1| Gallus gallus mRNA for hypothetical protein, clone 6l21 Length = 1481 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 cgaggcgggccgggccgggc 160 |||||||||||||||||||| Sbjct: 99 cgaggcgggccgggccgggc 118
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 ggccgggcgccttgcggcagcgcg 176 |||| ||||||||||||||||||| Sbjct: 5460739 ggccaggcgccttgcggcagcgcg 5460762
>dbj|AK133751.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730405P03 product:unclassifiable, full insert sequence Length = 2557 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gccgggcgccttgcggcagc 173 |||||||||||||||||||| Sbjct: 155 gccgggcgccttgcggcagc 136
>dbj|AK154881.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630110I01 product:arginyl aminopeptidase (aminopeptidase B)-like 1, full insert sequence Length = 4346 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gccgggcgccttgcggcagc 173 |||||||||||||||||||| Sbjct: 183 gccgggcgccttgcggcagc 164
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ggcgggccgggccgggcgcc 163 |||||||||||||||||||| Sbjct: 4422734 ggcgggccgggccgggcgcc 4422715
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 accgacgcgctcgcgcgcttcgcc 340 |||||||||||||| ||||||||| Sbjct: 9328023 accgacgcgctcgcccgcttcgcc 9328000
>ref|NM_001039311.1| Gallus gallus similar to 38 kDa Mov34 homolog (LOC426579), mRNA Length = 1481 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 cgaggcgggccgggccgggc 160 |||||||||||||||||||| Sbjct: 99 cgaggcgggccgggccgggc 118
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0667A10 Length = 152237 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 accgacgcgctcgcgcgcttcgcc 340 |||||||||||||| ||||||||| Sbjct: 104617 accgacgcgctcgcccgcttcgcc 104594
>dbj|AK119511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C04, full insert sequence Length = 1095 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 accgacgcgctcgcgcgcttcgcc 340 |||||||||||||| ||||||||| Sbjct: 285 accgacgcgctcgcccgcttcgcc 308
>dbj|AK104155.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B08, full insert sequence Length = 1023 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 accgacgcgctcgcgcgcttcgcc 340 |||||||||||||| ||||||||| Sbjct: 183 accgacgcgctcgcccgcttcgcc 206
>dbj|AK073275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025K21, full insert sequence Length = 1095 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 accgacgcgctcgcgcgcttcgcc 340 |||||||||||||| ||||||||| Sbjct: 280 accgacgcgctcgcccgcttcgcc 303
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 79 cgcgcgcgccaccacctctccggccgcc 106 |||||||||||||| ||| ||||||||| Sbjct: 3191248 cgcgcgcgccaccagctcgccggccgcc 3191275
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 cgacgcgctcgcgcgcttcg 338 |||||||||||||||||||| Sbjct: 2507657 cgacgcgctcgcgcgcttcg 2507676
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 gaggcgggccgggccgggcg 161 |||||||||||||||||||| Sbjct: 2076455 gaggcgggccgggccgggcg 2076436
>dbj|AB001868.1| Anolis carolinensis Brain-1 gene, complete cds Length = 1709 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 gaggcgggccgggccgggcg 161 |||||||||||||||||||| Sbjct: 1380 gaggcgggccgggccgggcg 1399 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,833,221 Number of Sequences: 3902068 Number of extensions: 1833221 Number of successful extensions: 52974 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49108 Number of HSP's gapped (non-prelim): 3866 length of query: 344 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 322 effective length of database: 17,147,199,772 effective search space: 5521398326584 effective search space used: 5521398326584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
