| Clone Name | bast62g09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 256 bits (129), Expect = 5e-65 Identities = 260/304 (85%) Strand = Plus / Plus Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165 |||||||| |||| ||||| |||||| |||| ||||| |||||||||||||| || ||| Sbjct: 103160 accatggccgccgcgctcacccgcccgccgccaggcacggtccagtgcttcgggcgcaag 103219 Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225 ||||| || || ||||| ||||||||||||| || ||||| || |||||||| |||||| Sbjct: 103220 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 103279 Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285 | || |||||||| ||| | || |||||||||||||||||||| |||||||| |||||| Sbjct: 103280 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 103339 Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345 ||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct: 103340 ctcgcggggaggtcacgcttcaaggacatcgacatgaggatccgcgtccgcggcggaggg 103399 Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405 |||||| ||||||||| | ||||| ||||||||| | || | ||||||||||||||| Sbjct: 103400 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 103459 Query: 406 caga 409 |||| Sbjct: 103460 caga 103463
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 256 bits (129), Expect = 5e-65 Identities = 260/304 (85%) Strand = Plus / Minus Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165 |||||||| |||| ||||| |||||| |||| ||||| |||||||||||||| || ||| Sbjct: 1287455 accatggccgccgcgctcacccgcccgccgccaggcacggtccagtgcttcgggcgcaag 1287396 Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225 ||||| || || ||||| ||||||||||||| || ||||| || |||||||| |||||| Sbjct: 1287395 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 1287336 Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285 | || |||||||| ||| | || |||||||||||||||||||| |||||||| |||||| Sbjct: 1287335 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 1287276 Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345 ||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct: 1287275 ctcgcggggaggtcacgcttcaaggacatcgacatgaggatccgcgtccgcggcggaggg 1287216 Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405 |||||| ||||||||| | ||||| ||||||||| | || | ||||||||||||||| Sbjct: 1287215 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 1287156 Query: 406 caga 409 |||| Sbjct: 1287155 caga 1287152
>dbj|AK059550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G01, full insert sequence Length = 800 Score = 256 bits (129), Expect = 5e-65 Identities = 260/304 (85%) Strand = Plus / Plus Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165 |||||||| |||| ||||| |||||| |||| ||||| |||||||||||||| || ||| Sbjct: 78 accatggccgccgcgctcacccgcccgccgccaggcacggtccagtgcttcgggcgcaag 137 Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225 ||||| || || ||||| ||||||||||||| || ||||| || |||||||| |||||| Sbjct: 138 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 197 Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285 | || |||||||| ||| | || |||||||||||||||||||| |||||||| |||||| Sbjct: 198 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 257 Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345 ||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct: 258 ctcgcggggaggtcacgcttcaaggacatcgacatgaggatccgcgtccgcggcggaggg 317 Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405 |||||| ||||||||| | ||||| ||||||||| | || | ||||||||||||||| Sbjct: 318 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 377 Query: 406 caga 409 |||| Sbjct: 378 caga 381
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 256 bits (129), Expect = 5e-65 Identities = 260/304 (85%) Strand = Plus / Minus Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165 |||||||| |||| ||||| |||||| |||| ||||| |||||||||||||| || ||| Sbjct: 1285176 accatggccgccgcgctcacccgcccgccgccaggcacggtccagtgcttcgggcgcaag 1285117 Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225 ||||| || || ||||| ||||||||||||| || ||||| || |||||||| |||||| Sbjct: 1285116 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 1285057 Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285 | || |||||||| ||| | || |||||||||||||||||||| |||||||| |||||| Sbjct: 1285056 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 1284997 Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345 ||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct: 1284996 ctcgcggggaggtcacgcttcaaggacatcgacatgaggatccgcgtccgcggcggaggg 1284937 Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405 |||||| ||||||||| | ||||| ||||||||| | || | ||||||||||||||| Sbjct: 1284936 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 1284877 Query: 406 caga 409 |||| Sbjct: 1284876 caga 1284873
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 240 bits (121), Expect = 3e-60 Identities = 258/304 (84%) Strand = Plus / Minus Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165 |||||||| |||| ||||| |||||| | || ||||| |||||||||||||| || ||| Sbjct: 1169380 accatggccgccgcgctcacccgcccgcctccaggcacggtccagtgcttcgggcgcaag 1169321 Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225 ||||| || || ||||| ||||||||||||| || ||||| || |||||||| |||||| Sbjct: 1169320 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 1169261 Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285 | || |||||||| ||| | || |||||||||||||||||||| |||||||| |||||| Sbjct: 1169260 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 1169201 Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345 ||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct: 1169200 ctcgcggggcgctcgcgcttcaaggacatcgacatgaggatccgcgtccgcggcggtggg 1169141 Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405 |||||| ||||||||| | ||||| ||||||||| | || | ||||||||||||||| Sbjct: 1169140 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 1169081 Query: 406 caga 409 |||| Sbjct: 1169080 caga 1169077
>dbj|AK121503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022H12, full insert sequence Length = 714 Score = 240 bits (121), Expect = 3e-60 Identities = 258/304 (84%) Strand = Plus / Plus Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165 |||||||| |||| ||||| |||||| | || ||||| |||||||||||||| || ||| Sbjct: 81 accatggccgccgcgctcacccgcccgcctccaggcacggtccagtgcttcgggcgcaag 140 Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225 ||||| || || ||||| ||||||||||||| || ||||| || |||||||| |||||| Sbjct: 141 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 200 Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285 | || |||||||| ||| | || |||||||||||||||||||| |||||||| |||||| Sbjct: 201 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 260 Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345 ||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct: 261 ctcgcggggcgctcgcgcttcaaggacatcgacatgaggatccgcgtccgcggcggtggg 320 Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405 |||||| ||||||||| | ||||| ||||||||| | || | ||||||||||||||| Sbjct: 321 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 380 Query: 406 caga 409 |||| Sbjct: 381 caga 384
>dbj|AK058697.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B10, full insert sequence Length = 723 Score = 240 bits (121), Expect = 3e-60 Identities = 258/304 (84%) Strand = Plus / Plus Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165 |||||||| |||| ||||| |||||| | || ||||| |||||||||||||| || ||| Sbjct: 77 accatggccgccgcgctcacccgcccgcctccaggcacggtccagtgcttcgggcgcaag 136 Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225 ||||| || || ||||| ||||||||||||| || ||||| || |||||||| |||||| Sbjct: 137 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 196 Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285 | || |||||||| ||| | || |||||||||||||||||||| |||||||| |||||| Sbjct: 197 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 256 Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345 ||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct: 257 ctcgcggggcgctcgcgcttcaaggacatcgacatgaggatccgcgtccgcggcggtggg 316 Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405 |||||| ||||||||| | ||||| ||||||||| | || | ||||||||||||||| Sbjct: 317 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 376 Query: 406 caga 409 |||| Sbjct: 377 caga 380
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 240 bits (121), Expect = 3e-60 Identities = 258/304 (84%) Strand = Plus / Minus Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165 |||||||| |||| ||||| |||||| | || ||||| |||||||||||||| || ||| Sbjct: 1169380 accatggccgccgcgctcacccgcccgcctccaggcacggtccagtgcttcgggcgcaag 1169321 Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225 ||||| || || ||||| ||||||||||||| || ||||| || |||||||| |||||| Sbjct: 1169320 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 1169261 Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285 | || |||||||| ||| | || |||||||||||||||||||| |||||||| |||||| Sbjct: 1169260 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 1169201 Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345 ||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct: 1169200 ctcgcggggcgctcgcgcttcaaggacatcgacatgaggatccgcgtccgcggcggtggg 1169141 Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405 |||||| ||||||||| | ||||| ||||||||| | || | ||||||||||||||| Sbjct: 1169140 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 1169081 Query: 406 caga 409 |||| Sbjct: 1169080 caga 1169077
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 240 bits (121), Expect = 3e-60 Identities = 258/304 (84%) Strand = Plus / Minus Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165 |||||||| |||| ||||| |||||| | || ||||| |||||||||||||| || ||| Sbjct: 108363 accatggccgccgcgctcacccgcccgcctccaggcacggtccagtgcttcgggcgcaag 108304 Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225 ||||| || || ||||| ||||||||||||| || ||||| || |||||||| |||||| Sbjct: 108303 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 108244 Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285 | || |||||||| ||| | || |||||||||||||||||||| |||||||| |||||| Sbjct: 108243 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 108184 Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345 ||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct: 108183 ctcgcggggcgctcgcgcttcaaggacatcgacatgaggatccgcgtccgcggcggtggg 108124 Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405 |||||| ||||||||| | ||||| ||||||||| | || | ||||||||||||||| Sbjct: 108123 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 108064 Query: 406 caga 409 |||| Sbjct: 108063 caga 108060
>gb|L36313.1|RICRPSAAA Oryza sativa ribosomal protein S16 mRNA, complete cds Length = 687 Score = 240 bits (121), Expect = 3e-60 Identities = 258/304 (84%) Strand = Plus / Plus Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165 |||||||| |||| ||||| |||||| |||| ||||| |||||||||||||| || ||| Sbjct: 67 accatggccgccgcgctcacccgcccgccgccaggcacggtccagtgcttcgggcgcaag 126 Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225 || | || || ||||| ||||||||||||| || ||||| || |||||||| |||||| Sbjct: 127 aaagcggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 186 Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285 | || |||||||| ||| | || |||||||||||||||||||| |||||||| |||||| Sbjct: 187 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 246 Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345 ||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct: 247 ctcgcggggaggtcacgcttcaaggacatcgacatgaggatccgcgtccgcggcggaggg 306 Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405 |||||| ||||||||| | ||||| ||||||||| | || | ||||||||||||||| Sbjct: 307 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 366 Query: 406 caga 409 |||| Sbjct: 367 caga 370
>gb|AY104417.1| Zea mays PCO060511 mRNA sequence Length = 795 Score = 230 bits (116), Expect = 3e-57 Identities = 226/263 (85%) Strand = Plus / Plus Query: 147 ccagtgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagcccggtcgcgg 206 |||||||||||| |||||||||||||| ||||| || || ||| ||||| || ||||| Sbjct: 84 ccagtgcttcgggcggaagaagaccgccgtcgcggtcgcgtacacgaagccggggcgcgg 143 Query: 207 cctcatcaaggtcaacggcgcgcccatcgagctcatccgccccgagatgctccgcctcaa 266 ||| |||||||| ||||||| || || ||||| ||||| || ||||||||||||||||| Sbjct: 144 cctgatcaaggtgaacggcgtcccgattgagctgatccgaccggagatgctccgcctcaa 203 Query: 267 ggccttcgagcctatcctgctcgccgggaggtcgcgcttcaaggacatcgacatgcgcat 326 |||||||||||| |||||||| || ||| |||| || |||||||||||||||||||| || Sbjct: 204 ggccttcgagcccatcctgctggcggggcggtcccggttcaaggacatcgacatgcggat 263 Query: 327 ccgcgtccgcggcggcgggaagacgagccagatctactccatccgtcaggccatcngcca 386 ||||||||||||||||||||||||| ||||||||| ||||||| |||||| || | | Sbjct: 264 ccgcgtccgcggcggcgggaagacgtcgcagatctacgccatccgccaggccgtcgccaa 323 Query: 387 gtcgctcgtcgcctactaccaga 409 | |||||||||||||||||||| Sbjct: 324 ggggctcgtcgcctactaccaga 346
>gb|BT018137.1| Zea mays clone EL01N0554G07.c mRNA sequence Length = 767 Score = 222 bits (112), Expect = 7e-55 Identities = 225/263 (85%) Strand = Plus / Plus Query: 147 ccagtgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagcccggtcgcgg 206 |||||||||||| |||||||||||||| ||||| || || ||| ||||| || ||||| Sbjct: 86 ccagtgcttcgggcggaagaagaccgccgtcgcggtcgcgtacacgaagccggggcgcgg 145 Query: 207 cctcatcaaggtcaacggcgcgcccatcgagctcatccgccccgagatgctccgcctcaa 266 ||| |||||||| ||||||| || || ||||| ||||| || ||||||||||||||||| Sbjct: 146 cctgatcaaggtgaacggcgtcccgattgagctgatccgaccggagatgctccgcctcaa 205 Query: 267 ggccttcgagcctatcctgctcgccgggaggtcgcgcttcaaggacatcgacatgcgcat 326 |||||||||||| |||||||| || ||| |||| || |||||||||||||||||||| || Sbjct: 206 ggccttcgagcccatcctgctggcggggcggtcccggttcaaggacatcgacatgcggat 265 Query: 327 ccgcgtccgcggcggcgggaagacgagccagatctactccatccgtcaggccatcngcca 386 ||||||||| ||||||||||||||| ||||||||| ||||||| |||||| || | | Sbjct: 266 ccgcgtccgtggcggcgggaagacgtcgcagatctacgccatccgccaggccgtcgccaa 325 Query: 387 gtcgctcgtcgcctactaccaga 409 | |||||||||||||||||||| Sbjct: 326 ggggctcgtcgcctactaccaga 348
>gb|BT019322.1| Zea mays clone Contig1009.F mRNA sequence Length = 674 Score = 214 bits (108), Expect = 2e-52 Identities = 230/271 (84%) Strand = Plus / Plus Query: 139 ggcaccgtccagtgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagccc 198 ||||| ||||||||||||||||| |||||||| ||||| ||||| |||||| |||||| Sbjct: 8 ggcacggtccagtgcttcggccgcaagaagacggctgtggccgtcgcctacaccaagccg 67 Query: 199 ggtcgcggcctcatcaaggtcaacggcgcgcccatcgagctcatccgccccgagatgctc 258 || ||||| || |||||||| ||||||| || || ||||||||| | || ||||||||| Sbjct: 68 gggcgcgggctgatcaaggtgaacggcgtcccgattgagctcatcaggccggagatgctc 127 Query: 259 cgcctcaaggccttcgagcctatcctgctcgccgggaggtcgcgcttcaaggacatcgac 318 |||||||||||||||||||| |||||||| || ||| | || | ||||||||||||||| Sbjct: 128 cgcctcaaggccttcgagcccatcctgctggcggggcgctccaggttcaaggacatcgac 187 Query: 319 atgcgcatccgcgtccgcggcggcgggaagacgagccagatctactccatccgtcaggcc 378 ||| | ||||||||||| ||||||||||||||| ||||||||| ||||||| |||||| Sbjct: 188 atgaggatccgcgtccgaggcggcgggaagacgtcgcagatctacgccatccgccaggcc 247 Query: 379 atcngccagtcgctcgtcgcctactaccaga 409 || | || |||||||||||||||||||| Sbjct: 248 gtcgccaaggggctcgtcgcctactaccaga 278
>gb|AY109312.1| Zea mays PCO060510 mRNA sequence Length = 778 Score = 214 bits (108), Expect = 2e-52 Identities = 239/283 (84%) Strand = Plus / Plus Query: 127 cgcccgacgcctggcaccgtccagtgcttcggccggaagaagaccgctgtcgccgtggcc 186 |||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||| ||| Sbjct: 94 cgcccgacccccggcacggtccagtgcttcggccgcaagaagacggctgtggccgtcgcc 153 Query: 187 tactgcaagcccggtcgcggcctcatcaaggtcaacggcgcgcccatcgagctcatccgc 246 ||| |||||| || ||||| || |||||||| ||||||| || || ||||||||| | Sbjct: 154 tacaccaagccggggcgcgggctgatcaaggtgaacggcgtcccgattgagctcatcagg 213 Query: 247 cccgagatgctccgcctcaaggccttcgagcctatcctgctcgccgggaggtcgcgcttc 306 || ||||||||||||||||||||||||||||| |||||||| || ||| | || | ||| Sbjct: 214 ccggagatgctccgcctcaaggccttcgagcccatcctgctggcggggcgctccaggttc 273 Query: 307 aaggacatcgacatgcgcatccgcgtccgcggcggcgggaagacgagccagatctactcc 366 ||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||| || Sbjct: 274 aaggacatcgacatgaggatccgcgtccgaggcggcgggaagacgtcgcagatctacgcc 333 Query: 367 atccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409 || || |||||| || | || |||||||||||||||||||| Sbjct: 334 attcgccaggccgtcgccaaggggctcgtcgcctactaccaga 376
>gb|DQ207649.1| Zea mays cultivar inbred line Mo17 IDP100 marker Length = 367 Score = 85.7 bits (43), Expect = 1e-13 Identities = 96/114 (84%) Strand = Plus / Plus Query: 296 ggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcgggaagacgagcc 355 ||||||| ||||||||| | |||||||| |||||||||||||||||||||||||| | Sbjct: 248 ggtcgcggttcaaggacgtggacatgcgggtccgcgtccgcggcggcgggaagacgtcgc 307 Query: 356 agatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409 || ||| | ||||||| ||||||||| | || ||||||||| |||||||||| Sbjct: 308 aggtcttcgccatccgccaggccatcgccaaggggctcgtcgcatactaccaga 361
>gb|DQ207648.1| Zea mays cultivar B73 IDP100 marker Length = 313 Score = 73.8 bits (37), Expect = 4e-10 Identities = 93/112 (83%) Strand = Plus / Plus Query: 296 ggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcgggaagacgagcc 355 ||||||| ||||||||| | |||||||| |||||||||||||||||||||||||| | Sbjct: 202 ggtcgcggttcaaggacgtggacatgcgggtccgcgtccgcggcggcgggaagacgtcgc 261 Query: 356 agatctactccatccgtcaggccatcngccagtcgctcgtcgcctactacca 407 || ||| | ||||||| |||||| || | || ||||||||| |||||||| Sbjct: 262 aggtcttcgccatccgccaggccgtcgccaaggggctcgtcgcatactacca 313
>dbj|AB226287.1| Aspergillus oryzae cDNA, contig sequence: AoEST3148 Length = 945 Score = 65.9 bits (33), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 354 ccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409 |||| ||||| ||||||||||||||||| | |||| ||||||||||||||||||| Sbjct: 324 ccaggtctacgccatccgtcaggccatcgccaagtccctcgtcgcctactaccaga 379
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 65.9 bits (33), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 354 ccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409 |||| ||||| ||||||||||||||||| | |||| ||||||||||||||||||| Sbjct: 1494145 ccaggtctacgccatccgtcaggccatcgccaagtccctcgtcgcctactaccaga 1494200
>dbj|AK063008.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A01, full insert sequence Length = 599 Score = 65.9 bits (33), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 354 ccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409 |||||||||| | ||||| ||||||||| | |||||||||||||||||||||||| Sbjct: 256 ccagatctacgcgatccgccaggccatcgccaagtcgctcgtcgcctactaccaga 311
>gb|AF031546.1|AF031546 Fritillaria agrestis ribosomal protein S16 (rps16) mRNA, complete cds Length = 660 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 314 tcgacatgcgcatccgcgtccgcggcggcgggaagac 350 |||||||||| |||||||||||||||||||||||||| Sbjct: 242 tcgacatgcggatccgcgtccgcggcggcgggaagac 278 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Plus Query: 151 tgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagcccggtcgcgg 206 ||||||||||| |||||||| ||||| ||||| | ||||||||| ||||||||| Sbjct: 79 tgcttcggccgcaagaagacggctgtagccgtcacgcactgcaagcgcggtcgcgg 134
>ref|XM_750289.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g10490) partial mRNA Length = 597 Score = 58.0 bits (29), Expect = 2e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 354 ccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409 |||||||||| ||||||| ||||||||| | |||| |||||||||||||||||| Sbjct: 265 ccagatctacgccatccgccaggccatcgccaagtccatcgtcgcctactaccaga 210
>ref|XM_750290.1| Aspergillus fumigatus Af293 ribosomal protein S9 (Afu2g10500) partial mRNA Length = 432 Score = 58.0 bits (29), Expect = 2e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 354 ccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409 |||||||||| ||||||| ||||||||| | |||| |||||||||||||||||| Sbjct: 228 ccagatctacgccatccgccaggccatcgccaagtccatcgtcgcctactaccaga 283
>emb|X51766.1|LPRPS16 L.polyphyllus mRNA for ribosomal protein S16 Length = 588 Score = 56.0 bits (28), Expect = 9e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 145 gtccagtgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagc 196 ||||| || |||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 32 gtccaatgtttcggccgcaagaaaaccgctgtcgccgtcacctactgcaagc 83
>gb|AF227979.1|AF227979 Euphorbia esula 40S ribosomal protein S16 mRNA, partial cds Length = 647 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 151 tgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagc 196 ||||||||||||||||||||||| || |||||| | ||||||||| Sbjct: 28 tgcttcggccggaagaagaccgccgtggccgtgactcactgcaagc 73
>ref|XM_863757.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9468.2), mRNA Length = 468 Score = 48.1 bits (24), Expect = 0.023 Identities = 44/51 (86%) Strand = Plus / Plus Query: 359 tctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409 ||||| ||||||| ||||||||| | |||| || |||||||||||||||| Sbjct: 269 tctacgccatccgccaggccatcgccaagtcccttgtcgcctactaccaga 319
>ref|XM_751490.1| Ustilago maydis 521 hypothetical protein (UM00436.1) partial mRNA Length = 600 Score = 48.1 bits (24), Expect = 0.023 Identities = 44/51 (86%) Strand = Plus / Plus Query: 355 cagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405 ||||||||| | ||||||||||| ||| | |||||||||| ||||||||| Sbjct: 397 cagatctacgcgatccgtcaggctatcgccaagtcgctcgttgcctactac 447
>ref|XM_359487.1| Magnaporthe grisea 70-15 hypothetical protein (MG05290.4) partial mRNA Length = 270 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 ggcctcatcaaggtcaacggc 225 ||||||||||||||||||||| Sbjct: 82 ggcctcatcaaggtcaacggc 102
>gb|AY849625.1| Magnaporthe grisea 40S ribosomal protein S16-like protein mRNA, complete cds Length = 927 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 ggcctcatcaaggtcaacggc 225 ||||||||||||||||||||| Sbjct: 181 ggcctcatcaaggtcaacggc 201
>gb|AC137609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0010H19, complete sequence Length = 162902 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgcaaccaccatggcagcc 117 |||||||||||||||||||| Sbjct: 68218 ccgcaaccaccatggcagcc 68199
>gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone OSJNBb0069G11, complete sequence Length = 174844 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgcaaccaccatggcagcc 117 |||||||||||||||||||| Sbjct: 2005 ccgcaaccaccatggcagcc 1986
>ref|XM_959735.1| Neurospora crassa OR74A hypothetical protein (NCU08620.1) partial mRNA Length = 429 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcctcatcaaggtcaacgg 224 |||||||||||||||||||| Sbjct: 76 ggcctcatcaaggtcaacgg 95
>ref|XM_329743.1| Neurospora crassa OR74A hypothetical protein (NCU08620.1) partial mRNA Length = 429 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcctcatcaaggtcaacgg 224 |||||||||||||||||||| Sbjct: 76 ggcctcatcaaggtcaacgg 95
>gb|AF108725.1|AF108725 Tortula ruralis ribosomal protein S16 mRNA, complete cds Length = 585 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tcgacatgcgcatccgcgtc 333 |||||||||||||||||||| Sbjct: 218 tcgacatgcgcatccgcgtc 237
>gb|AC119212.15| Mus musculus chromosome 1, clone RP24-192L21, complete sequence Length = 174380 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 gcacacagcaaccaagcaca 67 |||||||||||||||||||| Sbjct: 140271 gcacacagcaaccaagcaca 140252
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 gcgcatccgcgtccgcggcggcgg 344 |||| ||||||||||||||||||| Sbjct: 4911198 gcgcgtccgcgtccgcggcggcgg 4911175
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccgcaaccaccatggcagcc 117 |||||||||||||||||||| Sbjct: 10385185 ccgcaaccaccatggcagcc 10385166
>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0528E04 Length = 170701 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 gcgcatccgcgtccgcggcggcgg 344 |||| ||||||||||||||||||| Sbjct: 98681 gcgcgtccgcgtccgcggcggcgg 98658
>dbj|AK060515.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A01, full insert sequence Length = 1852 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 gcgcatccgcgtccgcggcggcgg 344 |||| ||||||||||||||||||| Sbjct: 184 gcgcgtccgcgtccgcggcggcgg 207 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,820,145 Number of Sequences: 3902068 Number of extensions: 1820145 Number of successful extensions: 33527 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33319 Number of HSP's gapped (non-prelim): 202 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)