ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome... 256 5e-65
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 256 5e-65
3dbj|AK059550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 5e-65
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 256 5e-65
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 240 3e-60
6dbj|AK121503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 3e-60
7dbj|AK058697.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 3e-60
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 240 3e-60
9emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb... 240 3e-60
10gb|L36313.1|RICRPSAAA Oryza sativa ribosomal protein S16 mRNA, c... 240 3e-60
11gb|AY104417.1| Zea mays PCO060511 mRNA sequence 230 3e-57
12gb|BT018137.1| Zea mays clone EL01N0554G07.c mRNA sequence 222 7e-55
13gb|BT019322.1| Zea mays clone Contig1009.F mRNA sequence 214 2e-52
14gb|AY109312.1| Zea mays PCO060510 mRNA sequence 214 2e-52
15gb|DQ207649.1| Zea mays cultivar inbred line Mo17 IDP100 marker 86 1e-13
16gb|DQ207648.1| Zea mays cultivar B73 IDP100 marker 74 4e-10
17dbj|AB226287.1| Aspergillus oryzae cDNA, contig sequence: AoEST3148 66 1e-07
18dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 66 1e-07
19dbj|AK063008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
20gb|AF031546.1|AF031546 Fritillaria agrestis ribosomal protein S1... 66 1e-07
21ref|XM_750289.1| Aspergillus fumigatus Af293 hypothetical protei... 58 2e-05
22ref|XM_750290.1| Aspergillus fumigatus Af293 ribosomal protein S... 58 2e-05
23emb|X51766.1|LPRPS16 L.polyphyllus mRNA for ribosomal protein S16 56 9e-05
24gb|AF227979.1|AF227979 Euphorbia esula 40S ribosomal protein S16... 52 0.001
25ref|XM_863757.1| Aspergillus nidulans FGSC A4 hypothetical prote... 48 0.023
26ref|XM_751490.1| Ustilago maydis 521 hypothetical protein (UM004... 48 0.023
27ref|XM_359487.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.4
28gb|AY849625.1| Magnaporthe grisea 40S ribosomal protein S16-like... 42 1.4
29gb|AC137609.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
30gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome... 40 5.5
31ref|XM_959735.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.5
32ref|XM_329743.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.5
33gb|AF108725.1|AF108725 Tortula ruralis ribosomal protein S16 mRN... 40 5.5
34gb|AC119212.15| Mus musculus chromosome 1, clone RP24-192L21, co... 40 5.5
35dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
37dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
38dbj|AK060515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5

>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15,
              complete sequence
          Length = 147941

 Score =  256 bits (129), Expect = 5e-65
 Identities = 260/304 (85%)
 Strand = Plus / Plus

                                                                          
Query: 106    accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165
              |||||||| ||||  ||||| |||||| |||| ||||| |||||||||||||| || |||
Sbjct: 103160 accatggccgccgcgctcacccgcccgccgccaggcacggtccagtgcttcgggcgcaag 103219

                                                                          
Query: 166    aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225
              ||||| || || |||||  ||||||||||||| || ||||| || |||||||| ||||||
Sbjct: 103220 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 103279

                                                                          
Query: 226    gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285
              |  || |||||||| ||| | || |||||||||||||||||||| |||||||| ||||||
Sbjct: 103280 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 103339

                                                                          
Query: 286    ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345
              ||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 103340 ctcgcggggaggtcacgcttcaaggacatcgacatgaggatccgcgtccgcggcggaggg 103399

                                                                          
Query: 346    aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405
              ||||||   ||||||||| | ||||| |||||||||  | || | |||||||||||||||
Sbjct: 103400 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 103459

                  
Query: 406    caga 409
              ||||
Sbjct: 103460 caga 103463



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  256 bits (129), Expect = 5e-65
 Identities = 260/304 (85%)
 Strand = Plus / Minus

                                                                           
Query: 106     accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165
               |||||||| ||||  ||||| |||||| |||| ||||| |||||||||||||| || |||
Sbjct: 1287455 accatggccgccgcgctcacccgcccgccgccaggcacggtccagtgcttcgggcgcaag 1287396

                                                                           
Query: 166     aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225
               ||||| || || |||||  ||||||||||||| || ||||| || |||||||| ||||||
Sbjct: 1287395 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 1287336

                                                                           
Query: 226     gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285
               |  || |||||||| ||| | || |||||||||||||||||||| |||||||| ||||||
Sbjct: 1287335 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 1287276

                                                                           
Query: 286     ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345
               ||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 1287275 ctcgcggggaggtcacgcttcaaggacatcgacatgaggatccgcgtccgcggcggaggg 1287216

                                                                           
Query: 346     aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405
               ||||||   ||||||||| | ||||| |||||||||  | || | |||||||||||||||
Sbjct: 1287215 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 1287156

                   
Query: 406     caga 409
               ||||
Sbjct: 1287155 caga 1287152



to top

>dbj|AK059550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G01, full
           insert sequence
          Length = 800

 Score =  256 bits (129), Expect = 5e-65
 Identities = 260/304 (85%)
 Strand = Plus / Plus

                                                                       
Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165
           |||||||| ||||  ||||| |||||| |||| ||||| |||||||||||||| || |||
Sbjct: 78  accatggccgccgcgctcacccgcccgccgccaggcacggtccagtgcttcgggcgcaag 137

                                                                       
Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225
           ||||| || || |||||  ||||||||||||| || ||||| || |||||||| ||||||
Sbjct: 138 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 197

                                                                       
Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285
           |  || |||||||| ||| | || |||||||||||||||||||| |||||||| ||||||
Sbjct: 198 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 257

                                                                       
Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345
           ||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 258 ctcgcggggaggtcacgcttcaaggacatcgacatgaggatccgcgtccgcggcggaggg 317

                                                                       
Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405
           ||||||   ||||||||| | ||||| |||||||||  | || | |||||||||||||||
Sbjct: 318 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 377

               
Query: 406 caga 409
           ||||
Sbjct: 378 caga 381



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  256 bits (129), Expect = 5e-65
 Identities = 260/304 (85%)
 Strand = Plus / Minus

                                                                           
Query: 106     accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165
               |||||||| ||||  ||||| |||||| |||| ||||| |||||||||||||| || |||
Sbjct: 1285176 accatggccgccgcgctcacccgcccgccgccaggcacggtccagtgcttcgggcgcaag 1285117

                                                                           
Query: 166     aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225
               ||||| || || |||||  ||||||||||||| || ||||| || |||||||| ||||||
Sbjct: 1285116 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 1285057

                                                                           
Query: 226     gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285
               |  || |||||||| ||| | || |||||||||||||||||||| |||||||| ||||||
Sbjct: 1285056 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 1284997

                                                                           
Query: 286     ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345
               ||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 1284996 ctcgcggggaggtcacgcttcaaggacatcgacatgaggatccgcgtccgcggcggaggg 1284937

                                                                           
Query: 346     aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405
               ||||||   ||||||||| | ||||| |||||||||  | || | |||||||||||||||
Sbjct: 1284936 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 1284877

                   
Query: 406     caga 409
               ||||
Sbjct: 1284876 caga 1284873



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  240 bits (121), Expect = 3e-60
 Identities = 258/304 (84%)
 Strand = Plus / Minus

                                                                           
Query: 106     accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165
               |||||||| ||||  ||||| |||||| | || ||||| |||||||||||||| || |||
Sbjct: 1169380 accatggccgccgcgctcacccgcccgcctccaggcacggtccagtgcttcgggcgcaag 1169321

                                                                           
Query: 166     aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225
               ||||| || || |||||  ||||||||||||| || ||||| || |||||||| ||||||
Sbjct: 1169320 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 1169261

                                                                           
Query: 226     gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285
               |  || |||||||| ||| | || |||||||||||||||||||| |||||||| ||||||
Sbjct: 1169260 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 1169201

                                                                           
Query: 286     ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345
               ||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 1169200 ctcgcggggcgctcgcgcttcaaggacatcgacatgaggatccgcgtccgcggcggtggg 1169141

                                                                           
Query: 346     aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405
               ||||||   ||||||||| | ||||| |||||||||  | || | |||||||||||||||
Sbjct: 1169140 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 1169081

                   
Query: 406     caga 409
               ||||
Sbjct: 1169080 caga 1169077



to top

>dbj|AK121503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022H12, full
           insert sequence
          Length = 714

 Score =  240 bits (121), Expect = 3e-60
 Identities = 258/304 (84%)
 Strand = Plus / Plus

                                                                       
Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165
           |||||||| ||||  ||||| |||||| | || ||||| |||||||||||||| || |||
Sbjct: 81  accatggccgccgcgctcacccgcccgcctccaggcacggtccagtgcttcgggcgcaag 140

                                                                       
Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225
           ||||| || || |||||  ||||||||||||| || ||||| || |||||||| ||||||
Sbjct: 141 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 200

                                                                       
Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285
           |  || |||||||| ||| | || |||||||||||||||||||| |||||||| ||||||
Sbjct: 201 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 260

                                                                       
Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345
           ||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 261 ctcgcggggcgctcgcgcttcaaggacatcgacatgaggatccgcgtccgcggcggtggg 320

                                                                       
Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405
           ||||||   ||||||||| | ||||| |||||||||  | || | |||||||||||||||
Sbjct: 321 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 380

               
Query: 406 caga 409
           ||||
Sbjct: 381 caga 384



to top

>dbj|AK058697.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B10, full
           insert sequence
          Length = 723

 Score =  240 bits (121), Expect = 3e-60
 Identities = 258/304 (84%)
 Strand = Plus / Plus

                                                                       
Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165
           |||||||| ||||  ||||| |||||| | || ||||| |||||||||||||| || |||
Sbjct: 77  accatggccgccgcgctcacccgcccgcctccaggcacggtccagtgcttcgggcgcaag 136

                                                                       
Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225
           ||||| || || |||||  ||||||||||||| || ||||| || |||||||| ||||||
Sbjct: 137 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 196

                                                                       
Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285
           |  || |||||||| ||| | || |||||||||||||||||||| |||||||| ||||||
Sbjct: 197 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 256

                                                                       
Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345
           ||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 257 ctcgcggggcgctcgcgcttcaaggacatcgacatgaggatccgcgtccgcggcggtggg 316

                                                                       
Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405
           ||||||   ||||||||| | ||||| |||||||||  | || | |||||||||||||||
Sbjct: 317 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 376

               
Query: 406 caga 409
           ||||
Sbjct: 377 caga 380



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  240 bits (121), Expect = 3e-60
 Identities = 258/304 (84%)
 Strand = Plus / Minus

                                                                           
Query: 106     accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165
               |||||||| ||||  ||||| |||||| | || ||||| |||||||||||||| || |||
Sbjct: 1169380 accatggccgccgcgctcacccgcccgcctccaggcacggtccagtgcttcgggcgcaag 1169321

                                                                           
Query: 166     aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225
               ||||| || || |||||  ||||||||||||| || ||||| || |||||||| ||||||
Sbjct: 1169320 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 1169261

                                                                           
Query: 226     gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285
               |  || |||||||| ||| | || |||||||||||||||||||| |||||||| ||||||
Sbjct: 1169260 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 1169201

                                                                           
Query: 286     ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345
               ||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 1169200 ctcgcggggcgctcgcgcttcaaggacatcgacatgaggatccgcgtccgcggcggtggg 1169141

                                                                           
Query: 346     aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405
               ||||||   ||||||||| | ||||| |||||||||  | || | |||||||||||||||
Sbjct: 1169140 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 1169081

                   
Query: 406     caga 409
               ||||
Sbjct: 1169080 caga 1169077



to top

>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 126974

 Score =  240 bits (121), Expect = 3e-60
 Identities = 258/304 (84%)
 Strand = Plus / Minus

                                                                          
Query: 106    accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165
              |||||||| ||||  ||||| |||||| | || ||||| |||||||||||||| || |||
Sbjct: 108363 accatggccgccgcgctcacccgcccgcctccaggcacggtccagtgcttcgggcgcaag 108304

                                                                          
Query: 166    aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225
              ||||| || || |||||  ||||||||||||| || ||||| || |||||||| ||||||
Sbjct: 108303 aagacggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 108244

                                                                          
Query: 226    gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285
              |  || |||||||| ||| | || |||||||||||||||||||| |||||||| ||||||
Sbjct: 108243 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 108184

                                                                          
Query: 286    ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345
              ||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 108183 ctcgcggggcgctcgcgcttcaaggacatcgacatgaggatccgcgtccgcggcggtggg 108124

                                                                          
Query: 346    aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405
              ||||||   ||||||||| | ||||| |||||||||  | || | |||||||||||||||
Sbjct: 108123 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 108064

                  
Query: 406    caga 409
              ||||
Sbjct: 108063 caga 108060



to top

>gb|L36313.1|RICRPSAAA Oryza sativa ribosomal protein S16 mRNA, complete cds
          Length = 687

 Score =  240 bits (121), Expect = 3e-60
 Identities = 258/304 (84%)
 Strand = Plus / Plus

                                                                       
Query: 106 accatggcagccgttctcactcgcccgacgcctggcaccgtccagtgcttcggccggaag 165
           |||||||| ||||  ||||| |||||| |||| ||||| |||||||||||||| || |||
Sbjct: 67  accatggccgccgcgctcacccgcccgccgccaggcacggtccagtgcttcgggcgcaag 126

                                                                       
Query: 166 aagaccgctgtcgccgtggcctactgcaagcccggtcgcggcctcatcaaggtcaacggc 225
           ||  | || || |||||  ||||||||||||| || ||||| || |||||||| ||||||
Sbjct: 127 aaagcggcggtggccgtctcctactgcaagccggggcgcgggctgatcaaggtgaacggc 186

                                                                       
Query: 226 gcgcccatcgagctcatccgccccgagatgctccgcctcaaggccttcgagcctatcctg 285
           |  || |||||||| ||| | || |||||||||||||||||||| |||||||| ||||||
Sbjct: 187 gtcccgatcgagctgatcaggccggagatgctccgcctcaaggcgttcgagcccatcctg 246

                                                                       
Query: 286 ctcgccgggaggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcggg 345
           ||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 247 ctcgcggggaggtcacgcttcaaggacatcgacatgaggatccgcgtccgcggcggaggg 306

                                                                       
Query: 346 aagacgagccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405
           ||||||   ||||||||| | ||||| |||||||||  | || | |||||||||||||||
Sbjct: 307 aagacgtcgcagatctacgcgatccgccaggccatcgccaaggccctcgtcgcctactac 366

               
Query: 406 caga 409
           ||||
Sbjct: 367 caga 370



to top

>gb|AY104417.1| Zea mays PCO060511 mRNA sequence
          Length = 795

 Score =  230 bits (116), Expect = 3e-57
 Identities = 226/263 (85%)
 Strand = Plus / Plus

                                                                       
Query: 147 ccagtgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagcccggtcgcgg 206
           |||||||||||| |||||||||||||| ||||| || || |||   ||||| || |||||
Sbjct: 84  ccagtgcttcgggcggaagaagaccgccgtcgcggtcgcgtacacgaagccggggcgcgg 143

                                                                       
Query: 207 cctcatcaaggtcaacggcgcgcccatcgagctcatccgccccgagatgctccgcctcaa 266
           ||| |||||||| |||||||  || || ||||| ||||| || |||||||||||||||||
Sbjct: 144 cctgatcaaggtgaacggcgtcccgattgagctgatccgaccggagatgctccgcctcaa 203

                                                                       
Query: 267 ggccttcgagcctatcctgctcgccgggaggtcgcgcttcaaggacatcgacatgcgcat 326
           |||||||||||| |||||||| || ||| |||| || |||||||||||||||||||| ||
Sbjct: 204 ggccttcgagcccatcctgctggcggggcggtcccggttcaaggacatcgacatgcggat 263

                                                                       
Query: 327 ccgcgtccgcggcggcgggaagacgagccagatctactccatccgtcaggccatcngcca 386
           |||||||||||||||||||||||||   ||||||||| ||||||| |||||| ||  | |
Sbjct: 264 ccgcgtccgcggcggcgggaagacgtcgcagatctacgccatccgccaggccgtcgccaa 323

                                  
Query: 387 gtcgctcgtcgcctactaccaga 409
           |  ||||||||||||||||||||
Sbjct: 324 ggggctcgtcgcctactaccaga 346



to top

>gb|BT018137.1| Zea mays clone EL01N0554G07.c mRNA sequence
          Length = 767

 Score =  222 bits (112), Expect = 7e-55
 Identities = 225/263 (85%)
 Strand = Plus / Plus

                                                                       
Query: 147 ccagtgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagcccggtcgcgg 206
           |||||||||||| |||||||||||||| ||||| || || |||   ||||| || |||||
Sbjct: 86  ccagtgcttcgggcggaagaagaccgccgtcgcggtcgcgtacacgaagccggggcgcgg 145

                                                                       
Query: 207 cctcatcaaggtcaacggcgcgcccatcgagctcatccgccccgagatgctccgcctcaa 266
           ||| |||||||| |||||||  || || ||||| ||||| || |||||||||||||||||
Sbjct: 146 cctgatcaaggtgaacggcgtcccgattgagctgatccgaccggagatgctccgcctcaa 205

                                                                       
Query: 267 ggccttcgagcctatcctgctcgccgggaggtcgcgcttcaaggacatcgacatgcgcat 326
           |||||||||||| |||||||| || ||| |||| || |||||||||||||||||||| ||
Sbjct: 206 ggccttcgagcccatcctgctggcggggcggtcccggttcaaggacatcgacatgcggat 265

                                                                       
Query: 327 ccgcgtccgcggcggcgggaagacgagccagatctactccatccgtcaggccatcngcca 386
           ||||||||| |||||||||||||||   ||||||||| ||||||| |||||| ||  | |
Sbjct: 266 ccgcgtccgtggcggcgggaagacgtcgcagatctacgccatccgccaggccgtcgccaa 325

                                  
Query: 387 gtcgctcgtcgcctactaccaga 409
           |  ||||||||||||||||||||
Sbjct: 326 ggggctcgtcgcctactaccaga 348



to top

>gb|BT019322.1| Zea mays clone Contig1009.F mRNA sequence
          Length = 674

 Score =  214 bits (108), Expect = 2e-52
 Identities = 230/271 (84%)
 Strand = Plus / Plus

                                                                       
Query: 139 ggcaccgtccagtgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagccc 198
           ||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||  |||||| 
Sbjct: 8   ggcacggtccagtgcttcggccgcaagaagacggctgtggccgtcgcctacaccaagccg 67

                                                                       
Query: 199 ggtcgcggcctcatcaaggtcaacggcgcgcccatcgagctcatccgccccgagatgctc 258
           || ||||| || |||||||| |||||||  || || ||||||||| | || |||||||||
Sbjct: 68  gggcgcgggctgatcaaggtgaacggcgtcccgattgagctcatcaggccggagatgctc 127

                                                                       
Query: 259 cgcctcaaggccttcgagcctatcctgctcgccgggaggtcgcgcttcaaggacatcgac 318
           |||||||||||||||||||| |||||||| || ||| | ||  | |||||||||||||||
Sbjct: 128 cgcctcaaggccttcgagcccatcctgctggcggggcgctccaggttcaaggacatcgac 187

                                                                       
Query: 319 atgcgcatccgcgtccgcggcggcgggaagacgagccagatctactccatccgtcaggcc 378
           ||| | ||||||||||| |||||||||||||||   ||||||||| ||||||| ||||||
Sbjct: 188 atgaggatccgcgtccgaggcggcgggaagacgtcgcagatctacgccatccgccaggcc 247

                                          
Query: 379 atcngccagtcgctcgtcgcctactaccaga 409
            ||  | ||  ||||||||||||||||||||
Sbjct: 248 gtcgccaaggggctcgtcgcctactaccaga 278



to top

>gb|AY109312.1| Zea mays PCO060510 mRNA sequence
          Length = 778

 Score =  214 bits (108), Expect = 2e-52
 Identities = 239/283 (84%)
 Strand = Plus / Plus

                                                                       
Query: 127 cgcccgacgcctggcaccgtccagtgcttcggccggaagaagaccgctgtcgccgtggcc 186
           |||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||| |||
Sbjct: 94  cgcccgacccccggcacggtccagtgcttcggccgcaagaagacggctgtggccgtcgcc 153

                                                                       
Query: 187 tactgcaagcccggtcgcggcctcatcaaggtcaacggcgcgcccatcgagctcatccgc 246
           |||  |||||| || ||||| || |||||||| |||||||  || || ||||||||| | 
Sbjct: 154 tacaccaagccggggcgcgggctgatcaaggtgaacggcgtcccgattgagctcatcagg 213

                                                                       
Query: 247 cccgagatgctccgcctcaaggccttcgagcctatcctgctcgccgggaggtcgcgcttc 306
           || ||||||||||||||||||||||||||||| |||||||| || ||| | ||  | |||
Sbjct: 214 ccggagatgctccgcctcaaggccttcgagcccatcctgctggcggggcgctccaggttc 273

                                                                       
Query: 307 aaggacatcgacatgcgcatccgcgtccgcggcggcgggaagacgagccagatctactcc 366
           ||||||||||||||| | ||||||||||| |||||||||||||||   ||||||||| ||
Sbjct: 274 aaggacatcgacatgaggatccgcgtccgaggcggcgggaagacgtcgcagatctacgcc 333

                                                      
Query: 367 atccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409
           || || |||||| ||  | ||  ||||||||||||||||||||
Sbjct: 334 attcgccaggccgtcgccaaggggctcgtcgcctactaccaga 376



to top

>gb|DQ207649.1| Zea mays cultivar inbred line Mo17 IDP100 marker
          Length = 367

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 96/114 (84%)
 Strand = Plus / Plus

                                                                       
Query: 296 ggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcgggaagacgagcc 355
           ||||||| ||||||||| | ||||||||  ||||||||||||||||||||||||||   |
Sbjct: 248 ggtcgcggttcaaggacgtggacatgcgggtccgcgtccgcggcggcgggaagacgtcgc 307

                                                                 
Query: 356 agatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409
           || ||| | ||||||| |||||||||  | ||  ||||||||| ||||||||||
Sbjct: 308 aggtcttcgccatccgccaggccatcgccaaggggctcgtcgcatactaccaga 361



to top

>gb|DQ207648.1| Zea mays cultivar B73 IDP100 marker
          Length = 313

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 93/112 (83%)
 Strand = Plus / Plus

                                                                       
Query: 296 ggtcgcgcttcaaggacatcgacatgcgcatccgcgtccgcggcggcgggaagacgagcc 355
           ||||||| ||||||||| | ||||||||  ||||||||||||||||||||||||||   |
Sbjct: 202 ggtcgcggttcaaggacgtggacatgcgggtccgcgtccgcggcggcgggaagacgtcgc 261

                                                               
Query: 356 agatctactccatccgtcaggccatcngccagtcgctcgtcgcctactacca 407
           || ||| | ||||||| |||||| ||  | ||  ||||||||| ||||||||
Sbjct: 262 aggtcttcgccatccgccaggccgtcgccaaggggctcgtcgcatactacca 313



to top

>dbj|AB226287.1| Aspergillus oryzae cDNA, contig sequence: AoEST3148
          Length = 945

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 354 ccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409
           |||| ||||| |||||||||||||||||  | |||| |||||||||||||||||||
Sbjct: 324 ccaggtctacgccatccgtcaggccatcgccaagtccctcgtcgcctactaccaga 379



to top

>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                       
Query: 354     ccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409
               |||| ||||| |||||||||||||||||  | |||| |||||||||||||||||||
Sbjct: 1494145 ccaggtctacgccatccgtcaggccatcgccaagtccctcgtcgcctactaccaga 1494200



to top

>dbj|AK063008.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A01, full
           insert sequence
          Length = 599

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 354 ccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409
           |||||||||| | ||||| |||||||||  | ||||||||||||||||||||||||
Sbjct: 256 ccagatctacgcgatccgccaggccatcgccaagtcgctcgtcgcctactaccaga 311



to top

>gb|AF031546.1|AF031546 Fritillaria agrestis ribosomal protein S16 (rps16) mRNA, complete
           cds
          Length = 660

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 314 tcgacatgcgcatccgcgtccgcggcggcgggaagac 350
           |||||||||| ||||||||||||||||||||||||||
Sbjct: 242 tcgacatgcggatccgcgtccgcggcggcgggaagac 278



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 151 tgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagcccggtcgcgg 206
           ||||||||||| |||||||| ||||| |||||  |  ||||||||| |||||||||
Sbjct: 79  tgcttcggccgcaagaagacggctgtagccgtcacgcactgcaagcgcggtcgcgg 134



to top

>ref|XM_750289.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g10490)
           partial mRNA
          Length = 597

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 354 ccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409
           |||||||||| ||||||| |||||||||  | ||||  ||||||||||||||||||
Sbjct: 265 ccagatctacgccatccgccaggccatcgccaagtccatcgtcgcctactaccaga 210



to top

>ref|XM_750290.1| Aspergillus fumigatus Af293 ribosomal protein S9 (Afu2g10500)
           partial mRNA
          Length = 432

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 354 ccagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409
           |||||||||| ||||||| |||||||||  | ||||  ||||||||||||||||||
Sbjct: 228 ccagatctacgccatccgccaggccatcgccaagtccatcgtcgcctactaccaga 283



to top

>emb|X51766.1|LPRPS16 L.polyphyllus mRNA for ribosomal protein S16
          Length = 588

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 145 gtccagtgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagc 196
           ||||| || |||||||| ||||| ||||||||||||||  ||||||||||||
Sbjct: 32  gtccaatgtttcggccgcaagaaaaccgctgtcgccgtcacctactgcaagc 83



to top

>gb|AF227979.1|AF227979 Euphorbia esula 40S ribosomal protein S16 mRNA, partial cds
          Length = 647

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 151 tgcttcggccggaagaagaccgctgtcgccgtggcctactgcaagc 196
           ||||||||||||||||||||||| || |||||| |  |||||||||
Sbjct: 28  tgcttcggccggaagaagaccgccgtggccgtgactcactgcaagc 73



to top

>ref|XM_863757.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9468.2), mRNA
          Length = 468

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                              
Query: 359 tctactccatccgtcaggccatcngccagtcgctcgtcgcctactaccaga 409
           ||||| ||||||| |||||||||  | |||| || ||||||||||||||||
Sbjct: 269 tctacgccatccgccaggccatcgccaagtcccttgtcgcctactaccaga 319



to top

>ref|XM_751490.1| Ustilago maydis 521 hypothetical protein (UM00436.1) partial mRNA
          Length = 600

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                              
Query: 355 cagatctactccatccgtcaggccatcngccagtcgctcgtcgcctactac 405
           ||||||||| | ||||||||||| |||  | |||||||||| |||||||||
Sbjct: 397 cagatctacgcgatccgtcaggctatcgccaagtcgctcgttgcctactac 447



to top

>ref|XM_359487.1| Magnaporthe grisea 70-15 hypothetical protein (MG05290.4) partial
           mRNA
          Length = 270

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 205 ggcctcatcaaggtcaacggc 225
           |||||||||||||||||||||
Sbjct: 82  ggcctcatcaaggtcaacggc 102



to top

>gb|AY849625.1| Magnaporthe grisea 40S ribosomal protein S16-like protein mRNA,
           complete cds
          Length = 927

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 205 ggcctcatcaaggtcaacggc 225
           |||||||||||||||||||||
Sbjct: 181 ggcctcatcaaggtcaacggc 201



to top

>gb|AC137609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0010H19, complete sequence
          Length = 162902

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    ccgcaaccaccatggcagcc 117
             ||||||||||||||||||||
Sbjct: 68218 ccgcaaccaccatggcagcc 68199



to top

>gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone
            OSJNBb0069G11, complete sequence
          Length = 174844

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   ccgcaaccaccatggcagcc 117
            ||||||||||||||||||||
Sbjct: 2005 ccgcaaccaccatggcagcc 1986



to top

>ref|XM_959735.1| Neurospora crassa OR74A hypothetical protein (NCU08620.1) partial
           mRNA
          Length = 429

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ggcctcatcaaggtcaacgg 224
           ||||||||||||||||||||
Sbjct: 76  ggcctcatcaaggtcaacgg 95



to top

>ref|XM_329743.1| Neurospora crassa OR74A hypothetical protein (NCU08620.1) partial
           mRNA
          Length = 429

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ggcctcatcaaggtcaacgg 224
           ||||||||||||||||||||
Sbjct: 76  ggcctcatcaaggtcaacgg 95



to top

>gb|AF108725.1|AF108725 Tortula ruralis ribosomal protein S16 mRNA, complete cds
          Length = 585

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 tcgacatgcgcatccgcgtc 333
           ||||||||||||||||||||
Sbjct: 218 tcgacatgcgcatccgcgtc 237



to top

>gb|AC119212.15| Mus musculus chromosome 1, clone RP24-192L21, complete sequence
          Length = 174380

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     gcacacagcaaccaagcaca 67
              ||||||||||||||||||||
Sbjct: 140271 gcacacagcaaccaagcaca 140252



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 321     gcgcatccgcgtccgcggcggcgg 344
               |||| |||||||||||||||||||
Sbjct: 4911198 gcgcgtccgcgtccgcggcggcgg 4911175



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 98       ccgcaaccaccatggcagcc 117
                ||||||||||||||||||||
Sbjct: 10385185 ccgcaaccaccatggcagcc 10385166



to top

>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0528E04
          Length = 170701

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 321   gcgcatccgcgtccgcggcggcgg 344
             |||| |||||||||||||||||||
Sbjct: 98681 gcgcgtccgcgtccgcggcggcgg 98658



to top

>dbj|AK060515.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A01, full
           insert sequence
          Length = 1852

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 321 gcgcatccgcgtccgcggcggcgg 344
           |||| |||||||||||||||||||
Sbjct: 184 gcgcgtccgcgtccgcggcggcgg 207


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,820,145
Number of Sequences: 3902068
Number of extensions: 1820145
Number of successful extensions: 33527
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33319
Number of HSP's gapped (non-prelim): 202
length of query: 410
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 388
effective length of database: 17,147,199,772
effective search space: 6653113511536
effective search space used: 6653113511536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top