ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62g07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY228552.1| Hordeum vulgare agmatine coumaroyltransferase (ACT) mRNA, complete cds Length = 1508 Score = 601 bits (303), Expect = e-169 Identities = 317/322 (98%) Strand = Plus / Plus Query: 86 catgaagatcaccgtgcactcgtccaaggccgtcaagcccgagtacggcgcctgcggcgt 145 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct: 7 catgaagatcaccgtgcactcttccaaggccgtcaagcccgagtacggcgcctgcggcct 66 Query: 146 cgctccggggtgcaccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcga 205 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 cgctccggggtgtaccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcga 126 Query: 206 cacgtacatctcggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcga 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 127 cacgtacatctcggtgatctacgccttccacgcgccggcgccgcccaacgccgttctcga 186 Query: 266 ggccgggctgggcagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcna 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 187 ggccgggctgggcagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcga 246 Query: 326 cgccagcggcggccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgac 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 cgccagcggcggccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgac 306 Query: 386 ggccgacgtggcgctcgacagc 407 |||||||||||||||||||||| Sbjct: 307 ggccgacgtggcgctcgacagc 328
>ref|XM_474243.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 196 bits (99), Expect = 4e-47 Identities = 212/250 (84%) Strand = Plus / Plus Query: 158 caccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgacacgtacatctc 217 ||||| ||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 69 caccggcgacgtcgtcccgctcaaagtgttcgacaaggcgaactttgacacgtacatctc 128 Query: 218 ggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgaggccgggctggg 277 |||||| ||||||| || | | ||||| ||| ||||||||| ||||||||| ||||| | Sbjct: 129 ggtgatatacgcctaccgcccaccggctccggccaacgccgccctcgaggcggggctcgc 188 Query: 278 cagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcnacgccagcggcgg 337 || |||||| | || |||||||||||||| ||||| |||||||| ||| | |||| Sbjct: 189 caaggcgctgatcgagtaccgcgagtgggcagggcgcctcggcgtggacggcgacggcaa 248 Query: 338 ccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacggccgacgtggc 397 |||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||| | Sbjct: 249 ccgcgccatcctgctcaacgacgggggcgcgcggttcgtcgaggcgacggccgacgtgac 308 Query: 398 gctcgacagc 407 ||| |||||| Sbjct: 309 gctggacagc 318 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 87 atgaagatcaccgtgcactcgtccaaggccgtcaagcc 124 |||||||||||||||||||| ||||||||||||||||| Sbjct: 1 atgaagatcaccgtgcactcatccaaggccgtcaagcc 38
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 196 bits (99), Expect = 4e-47 Identities = 212/250 (84%) Strand = Plus / Plus Query: 158 caccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgacacgtacatctc 217 ||||| ||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 10323 caccggcgacgtcgtcccgctcaaagtgttcgacaaggcgaactttgacacgtacatctc 10382 Query: 218 ggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgaggccgggctggg 277 |||||| ||||||| || | | ||||| ||| ||||||||| ||||||||| ||||| | Sbjct: 10383 ggtgatatacgcctaccgcccaccggctccggccaacgccgccctcgaggcggggctcgc 10442 Query: 278 cagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcnacgccagcggcgg 337 || |||||| | || |||||||||||||| ||||| |||||||| ||| | |||| Sbjct: 10443 caaggcgctgatcgagtaccgcgagtgggcagggcgcctcggcgtggacggcgacggcaa 10502 Query: 338 ccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacggccgacgtggc 397 |||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||| | Sbjct: 10503 ccgcgccatcctgctcaacgacgggggcgcgcggttcgtcgaggcgacggccgacgtgac 10562 Query: 398 gctcgacagc 407 ||| |||||| Sbjct: 10563 gctggacagc 10572 Score = 174 bits (88), Expect = 1e-40 Identities = 263/321 (81%), Gaps = 3/321 (0%) Strand = Plus / Minus Query: 87 atgaagatcaccgtgcactcgtccaaggccgtcaagcccgagtacggcgcctgcggcgtc 146 ||||||||||| ||||| || ||||||||||| ||||| | |||||||| | || | | Sbjct: 15236 atgaagatcacggtgcattcatccaaggccgtgaagccggtgtacggcgacgccgtggcc 15177 Query: 147 gctccggggtgcaccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgac 206 |||||| | |||||||||||| || ||||||| ||| |||||| ||| ||||| ||| Sbjct: 15176 gctccgag---caccgccgacgttgtgccgctcagtgtgttcgacagggcgaactttgac 15120 Query: 207 acgtacatctcggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgag 266 |||||| |||| || || |||||||||| | ||||||| ||| ||||| ||||||||||| Sbjct: 15119 acgtacgtctccgtcatatacgccttccgcccgccggctccggccaactccgtcctcgag 15060 Query: 267 gccgggctgggcagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcnac 326 || || || | || ||||||| || |||||||||||||| || || |||||||| | Sbjct: 15059 gcgggcctcgccaaggcgctggccgagtaccgcgagtgggcgggccgcctcggcgtggat 15000 Query: 327 gccagcggcggccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacg 386 | | ||||| |||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 14999 ggcgacggcgaccgcgccatcctgctcaacgacgcgggcgcgcggttcgtcgaggcgacg 14940 Query: 387 gccgacgtggcgctcgacagc 407 ||||||||| |||| |||||| Sbjct: 14939 gccgacgtgacgctggacagc 14919 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 85 acatgaagatcaccgtgcactcgtccaaggccgtcaagcc 124 |||||||||||||||||||||| ||||||||||||||||| Sbjct: 10253 acatgaagatcaccgtgcactcatccaaggccgtcaagcc 10292
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 196 bits (99), Expect = 4e-47 Identities = 212/250 (84%) Strand = Plus / Plus Query: 158 caccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgacacgtacatctc 217 ||||| ||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 33959426 caccggcgacgtcgtcccgctcaaagtgttcgacaaggcgaactttgacacgtacatctc 33959485 Query: 218 ggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgaggccgggctggg 277 |||||| ||||||| || | | ||||| ||| ||||||||| ||||||||| ||||| | Sbjct: 33959486 ggtgatatacgcctaccgcccaccggctccggccaacgccgccctcgaggcggggctcgc 33959545 Query: 278 cagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcnacgccagcggcgg 337 || |||||| | || |||||||||||||| ||||| |||||||| ||| | |||| Sbjct: 33959546 caaggcgctgatcgagtaccgcgagtgggcagggcgcctcggcgtggacggcgacggcaa 33959605 Query: 338 ccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacggccgacgtggc 397 |||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||| | Sbjct: 33959606 ccgcgccatcctgctcaacgacgggggcgcgcggttcgtcgaggcgacggccgacgtgac 33959665 Query: 398 gctcgacagc 407 ||| |||||| Sbjct: 33959666 gctggacagc 33959675 Score = 174 bits (88), Expect = 1e-40 Identities = 263/321 (81%), Gaps = 3/321 (0%) Strand = Plus / Minus Query: 87 atgaagatcaccgtgcactcgtccaaggccgtcaagcccgagtacggcgcctgcggcgtc 146 ||||||||||| ||||| || ||||||||||| ||||| | |||||||| | || | | Sbjct: 33964339 atgaagatcacggtgcattcatccaaggccgtgaagccggtgtacggcgacgccgtggcc 33964280 Query: 147 gctccggggtgcaccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgac 206 |||||| | |||||||||||| || ||||||| ||| |||||| ||| ||||| ||| Sbjct: 33964279 gctccgag---caccgccgacgttgtgccgctcagtgtgttcgacagggcgaactttgac 33964223 Query: 207 acgtacatctcggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgag 266 |||||| |||| || || |||||||||| | ||||||| ||| ||||| ||||||||||| Sbjct: 33964222 acgtacgtctccgtcatatacgccttccgcccgccggctccggccaactccgtcctcgag 33964163 Query: 267 gccgggctgggcagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcnac 326 || || || | || ||||||| || |||||||||||||| || || |||||||| | Sbjct: 33964162 gcgggcctcgccaaggcgctggccgagtaccgcgagtgggcgggccgcctcggcgtggat 33964103 Query: 327 gccagcggcggccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacg 386 | | ||||| |||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 33964102 ggcgacggcgaccgcgccatcctgctcaacgacgcgggcgcgcggttcgtcgaggcgacg 33964043 Query: 387 gccgacgtggcgctcgacagc 407 ||||||||| |||| |||||| Sbjct: 33964042 gccgacgtgacgctggacagc 33964022 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 85 acatgaagatcaccgtgcactcgtccaaggccgtcaagcc 124 |||||||||||||||||||||| ||||||||||||||||| Sbjct: 33959356 acatgaagatcaccgtgcactcatccaaggccgtcaagcc 33959395 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cggcgcccggttcgtggagg 381 |||||||||||||||||||| Sbjct: 30995995 cggcgcccggttcgtggagg 30996014
>dbj|AK109743.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E07, full insert sequence Length = 1640 Score = 196 bits (99), Expect = 4e-47 Identities = 212/250 (84%) Strand = Plus / Plus Query: 158 caccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgacacgtacatctc 217 ||||| ||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 175 caccggcgacgtcgtcccgctcaaagtgttcgacaaggcgaactttgacacgtacatctc 234 Query: 218 ggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgaggccgggctggg 277 |||||| ||||||| || | | ||||| ||| ||||||||| ||||||||| ||||| | Sbjct: 235 ggtgatatacgcctaccgcccaccggctccggccaacgccgccctcgaggcggggctcgc 294 Query: 278 cagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcnacgccagcggcgg 337 || |||||| | || |||||||||||||| ||||| |||||||| ||| | |||| Sbjct: 295 caaggcgctgatcgagtaccgcgagtgggcagggcgcctcggcgtggacggcgacggcaa 354 Query: 338 ccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacggccgacgtggc 397 |||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||| | Sbjct: 355 ccgcgccatcctgctcaacgacgggggcgcgcggttcgtcgaggcgacggccgacgtgac 414 Query: 398 gctcgacagc 407 ||| |||||| Sbjct: 415 gctggacagc 424 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 85 acatgaagatcaccgtgcactcgtccaaggccgtcaagcc 124 |||||||||||||||||||||| ||||||||||||||||| Sbjct: 105 acatgaagatcaccgtgcactcatccaaggccgtcaagcc 144
>ref|XM_474244.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 174 bits (88), Expect = 1e-40 Identities = 263/321 (81%), Gaps = 3/321 (0%) Strand = Plus / Plus Query: 87 atgaagatcaccgtgcactcgtccaaggccgtcaagcccgagtacggcgcctgcggcgtc 146 ||||||||||| ||||| || ||||||||||| ||||| | |||||||| | || | | Sbjct: 1 atgaagatcacggtgcattcatccaaggccgtgaagccggtgtacggcgacgccgtggcc 60 Query: 147 gctccggggtgcaccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgac 206 |||||| | |||||||||||| || ||||||| ||| |||||| ||| ||||| ||| Sbjct: 61 gctccgag---caccgccgacgttgtgccgctcagtgtgttcgacagggcgaactttgac 117 Query: 207 acgtacatctcggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgag 266 |||||| |||| || || |||||||||| | ||||||| ||| ||||| ||||||||||| Sbjct: 118 acgtacgtctccgtcatatacgccttccgcccgccggctccggccaactccgtcctcgag 177 Query: 267 gccgggctgggcagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcnac 326 || || || | || ||||||| || |||||||||||||| || || |||||||| | Sbjct: 178 gcgggcctcgccaaggcgctggccgagtaccgcgagtgggcgggccgcctcggcgtggat 237 Query: 327 gccagcggcggccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacg 386 | | ||||| |||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 238 ggcgacggcgaccgcgccatcctgctcaacgacgcgggcgcgcggttcgtcgaggcgacg 297 Query: 387 gccgacgtggcgctcgacagc 407 ||||||||| |||| |||||| Sbjct: 298 gccgacgtgacgctggacagc 318
>gb|AY234333.1| Triticum aestivum putative agmatine coumaroyltransferase mRNA, partial cds Length = 1220 Score = 109 bits (55), Expect = 7e-21 Identities = 61/63 (96%) Strand = Plus / Plus Query: 345 atcctgctcaacgacgccggcgcccggttcgtggaggcgacggccgacgtggcgctcgac 404 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 1 atcctgctcaacgacgccggcgcgcggttcgtggaggcgacggccgacgtagcgctcgac 60 Query: 405 agc 407 ||| Sbjct: 61 agc 63
>ref|XM_469315.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1389 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 294 taccgcgagtgggccgggcggctcggcgtc 323 ||||| |||||||| ||||||||||||||| Sbjct: 196 taccgggagtgggcggggcggctcggcgtc 225
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 294 taccgcgagtgggccgggcggctcggcgtc 323 ||||| |||||||| ||||||||||||||| Sbjct: 26917547 taccgggagtgggcggggcggctcggcgtc 26917576 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 236 cgcgccggcgccgcccaacgccgtc 260 ||||||||||||||||| ||||||| Sbjct: 33017271 cgcgccggcgccgcccaccgccgtc 33017247
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete sequence Length = 149303 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 294 taccgcgagtgggccgggcggctcggcgtc 323 ||||| |||||||| ||||||||||||||| Sbjct: 96547 taccgggagtgggcggggcggctcggcgtc 96576
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 294 taccgcgagtgggccgggcggctcggcgtc 323 ||||| |||||||| ||||||||||||||| Sbjct: 27008870 taccgggagtgggcggggcggctcggcgtc 27008899 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 236 cgcgccggcgccgcccaacgccgtc 260 ||||||||||||||||| ||||||| Sbjct: 33107781 cgcgccggcgccgcccaccgccgtc 33107757
>dbj|D37772.1|MEAL1 Measles virus mRNA for RNA dependent RNA poymerase, complete cds Length = 6597 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 gtgctcgacaaggccaacttcg 204 |||||||||||||||||||||| Sbjct: 5510 gtgctcgacaaggccaacttcg 5489
>ref|NM_185045.1| Oryza sativa (japonica cultivar-group), mRNA Length = 246 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 236 cgcgccggcgccgcccaacgccgtc 260 ||||||||||||||||| ||||||| Sbjct: 114 cgcgccggcgccgcccaccgccgtc 90
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gcggcggccgcgcgatcctgc 351 ||||||||||||||||||||| Sbjct: 1047623 gcggcggccgcgcgatcctgc 1047643
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 gcggcggccgcgcgatcctgc 351 ||||||||||||||||||||| Sbjct: 2518137 gcggcggccgcgcgatcctgc 2518117
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 179 caccgtgctcgacaaggccaacttcgaca 207 ||||||| |||||||||||||| |||||| Sbjct: 1386943 caccgtgatcgacaaggccaacctcgaca 1386915
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gcggcggccgcgcgatcctgc 351 ||||||||||||||||||||| Sbjct: 1864512 gcggcggccgcgcgatcctgc 1864532
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 cgcgccggcgccgcccaacgccgtc 260 ||||||||||||||||| ||||||| Sbjct: 106037 cgcgccggcgccgcccaccgccgtc 106061
>dbj|AK108023.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-136-A05, full insert sequence Length = 671 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 236 cgcgccggcgccgcccaacgccgtc 260 ||||||||||||||||| ||||||| Sbjct: 259 cgcgccggcgccgcccaccgccgtc 235
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gcggcggccgcgcgatcctgc 351 ||||||||||||||||||||| Sbjct: 2618526 gcggcggccgcgcgatcctgc 2618546
>ref|XM_473852.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1200 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cggcgcccggttcgtggagg 381 |||||||||||||||||||| Sbjct: 324 cggcgcccggttcgtggagg 343
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tcgtggaggcgacggccgac 392 |||||||||||||||||||| Sbjct: 1441682 tcgtggaggcgacggccgac 1441701
>gb|AY224543.1| Oryza sativa (japonica cultivar-group) isolate 23485 coproporphyrinogen III oxidase mRNA, partial cds Length = 975 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cggcgcccggttcgtggagg 381 |||||||||||||||||||| Sbjct: 99 cggcgcccggttcgtggagg 118
>ref|XM_382664.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02488.1) partial mRNA Length = 1470 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 gtcgacatgaagatcaccgtgcac 104 ||||| |||||||||||||||||| Sbjct: 708 gtcgagatgaagatcaccgtgcac 685
>gb|AF222421.1| Simicratea welwitschii 26S ribosomal RNA gene, partial sequence Length = 921 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ctccggggtgcaccgccgac 167 |||||||||||||||||||| Sbjct: 716 ctccggggtgcaccgccgac 735
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cggcgcccggttcgtggagg 381 |||||||||||||||||||| Sbjct: 93368 cggcgcccggttcgtggagg 93387
>gb|AE005704.1| Caulobacter crescentus CB15 section 30 of 359 of the complete genome Length = 9704 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 gccagcggcggccgcgcgatcctg 350 |||||||||||| ||||||||||| Sbjct: 3912 gccagcggcggcggcgcgatcctg 3889
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 305 ggccgggcggctcggcgtcnacg 327 ||||||||||||||||||| ||| Sbjct: 4293770 ggccgggcggctcggcgtcgacg 4293748 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gggccgggcggctcggcgtc 323 |||||||||||||||||||| Sbjct: 934434 gggccgggcggctcggcgtc 934453
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 caacgccgtcctcgaggccg 270 |||||||||||||||||||| Sbjct: 1150049 caacgccgtcctcgaggccg 1150068
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tcgccgtcgacatgaagatc 95 |||||||||||||||||||| Sbjct: 3076078 tcgccgtcgacatgaagatc 3076059
>dbj|AK070391.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050L08, full insert sequence Length = 1164 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cggcgcccggttcgtggagg 381 |||||||||||||||||||| Sbjct: 60 cggcgcccggttcgtggagg 79 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,146,024 Number of Sequences: 3902068 Number of extensions: 2146024 Number of successful extensions: 50955 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49416 Number of HSP's gapped (non-prelim): 1532 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
