ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62g01 |
|---|---|
| Clone Library Name | barley_pub |
>MEN8_SILLA (O24356) MEN-8 protein precursor| Length = 100 Score = 38.9 bits (89), Expect = 0.003 Identities = 19/44 (43%), Positives = 23/44 (52%) Frame = +1 Query: 238 CTGALLNLSSCLTYVESGSALTRPEKGCCGALSGVVDGEAACLC 369 C L NL+ C YV G+ T P + CC ALSGV C+C Sbjct: 38 CASQLGNLNVCAPYVVPGAVNTNPSQECCAALSGV---NHDCMC 78
>RNPH_ECOL6 (P66679) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 238 Score = 33.5 bits (75), Expect = 0.13 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Frame = +1 Query: 241 TGALLNLSSCLT-YVESGSALTRPEKGCCGALS-GVVDGEAAC 363 TGA + L+ L VE+G T P KG A+S G+V+GEA C Sbjct: 131 TGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVC 173
>RNPH_ECO57 (P66680) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 238 Score = 33.5 bits (75), Expect = 0.13 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Frame = +1 Query: 241 TGALLNLSSCLT-YVESGSALTRPEKGCCGALS-GVVDGEAAC 363 TGA + L+ L VE+G T P KG A+S G+V+GEA C Sbjct: 131 TGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVC 173
>RNPH_SHIFL (Q83PN2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 238 Score = 33.1 bits (74), Expect = 0.17 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Frame = +1 Query: 241 TGALLNLSSCLT-YVESGSALTRPEKGCCGALS-GVVDGEAAC 363 TGA + L+ L VE+G T P KG A+S G+V+GEA C Sbjct: 131 TGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAIC 173
>RNPH_HAEIN (P44444) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 238 Score = 33.1 bits (74), Expect = 0.17 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Frame = +1 Query: 241 TGALLNLSSCLT-YVESGSALTRPEKGCCGALS-GVVDGEAAC 363 TGA + L + +E+G+ T P KG A+S G+VDG+A C Sbjct: 131 TGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVDGQAVC 173
>RNPH_ECOLI (P03842) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 238 Score = 32.3 bits (72), Expect = 0.29 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = +1 Query: 241 TGALLNLSSCLT-YVESGSALTRPEKGCCGALS-GVVDGEAAC 363 TGA + L L VE+G T P KG A+S G+V+GEA C Sbjct: 131 TGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVC 173
>MC1_PINRA (O24493) Male-cone protein 1 precursor (PRMC1)| Length = 92 Score = 32.0 bits (71), Expect = 0.37 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +1 Query: 235 DCTGALLNLSSCLTYVESGSALTRPEKGCCGALSGVVDGEAACLC 369 DC+ A+ L+ C + V S +P CC AL G +C+C Sbjct: 27 DCSNAMDKLAPCTSAVGLSSNGVKPSSECCDALKGT---STSCVC 68
>NLTP1_LYCES (P93224) Nonspecific lipid-transfer protein 1 precursor (LTP 1)| Length = 114 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Frame = +1 Query: 232 LDCTGALLNLSSCLTYVESGSALTRPEKGCCGALSGVV-------DGEAACLC 369 L C L+ CL Y+E P GCCG + G++ D + AC C Sbjct: 25 LSCGEVTSGLAPCLPYLEGRG----PLGGCCGGVKGLLGAAKTPEDRKTACTC 73
>MAGC1_HUMAN (O60732) Melanoma-associated antigen C1 (MAGE-C1 antigen)| (Cancer-testis antigen CT7) Length = 1142 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -2 Query: 353 SPSTTPESAPQQPFSGRVSALPDST--YVRQEDRLSSAPVQSSS 228 SP + PE Q P VS+ P ST + Q +SS P +SS Sbjct: 797 SPQSPPEGPAQSPLQSPVSSFPSSTSSSLSQSSPVSSFPSSTSS 840
>UGPI5_ARATH (Q9C7F7) Uncharacterized GPI-anchored protein At1g27950 precursor| Length = 193 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +1 Query: 235 DCTGALLNLSSCLTYVESGSALTRPEKGCCGALSGVVDGEAACLCGLV 378 +C ++ CL + +G A T P K CC A+ + + + CLC ++ Sbjct: 34 ECNQDFQKVTLCLDFA-TGKA-TIPSKKCCDAVEDIKERDPKCLCFVI 79
>NLTP_AMACA (P80450) Nonspecific lipid-transfer protein (LTP) (Phospholipid| transfer protein) (PLTP) Length = 94 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 7/51 (13%) Frame = +1 Query: 238 CTGALLNLSSCLTYVESGSALTRPEKGCC-------GALSGVVDGEAACLC 369 CT L C+TY++ G+ T P CC A V D AC C Sbjct: 4 CTVVTKALGPCMTYLK-GTGATPPPANCCAGVRSLKAAAQTVADRRMACNC 53
>NLTP1_AMAHP (P83167) Nonspecific lipid-transfer protein 1 (LTP 1) (NS-LTP1)| Length = 94 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 7/51 (13%) Frame = +1 Query: 238 CTGALLNLSSCLTYVESGSALTRPEKGCC-------GALSGVVDGEAACLC 369 CT L C+TY++ G+ T P CC A V D AC C Sbjct: 4 CTVVTKALGPCMTYLK-GTGATPPPANCCAGVRSLKAAAQTVADRRMACNC 53
>FGD3_HUMAN (Q5JSP0) FYVE, RhoGEF and PH domain-containing protein 3 (Zinc| finger FYVE domain-containing protein 5) Length = 725 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/40 (37%), Positives = 16/40 (40%) Frame = -1 Query: 162 LQRPDSEEREGDGHGWHHSYGDGLASWYLDCVGRALFDMW 43 L PD EER GH W + SWYL L W Sbjct: 657 LSVPDPEERLDSGHVWKLQWAK--QSWYLSASSAELQQQW 694
>FGD3_PONPY (Q5R5T1) FYVE, RhoGEF and PH domain-containing protein 3| Length = 737 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/40 (37%), Positives = 16/40 (40%) Frame = -1 Query: 162 LQRPDSEEREGDGHGWHHSYGDGLASWYLDCVGRALFDMW 43 L PD EER GH W + SWYL L W Sbjct: 669 LSVPDPEERLDSGHVWKLQWAK--QSWYLSASSAELQQRW 706
>COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) (Fragment) Length = 709 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -2 Query: 377 TSPHRQAASPSTTPESAPQQPFSGRVSALPDSTY 276 TS +R+A SP++T ++P F G++ TY Sbjct: 77 TSSYRRAHSPASTLPNSPGSTFEGKIHITRHGTY 110
>SAMD4_MACFA (Q95LV5) Sterile alpha motif domain-containing protein 4| Length = 617 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -2 Query: 374 SPHRQAASPSTTPESAPQQPFSGRVSAL 291 +P + SPSTTPE+ P++P + R +L Sbjct: 312 TPIKAYGSPSTTPEARPREPQAPRQPSL 339
>MALA_BACST (Q45632) Maltose permease| Length = 394 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -1 Query: 114 HHSYGDGLASWYLDCVGRALFDMWRRGA 31 + + G+GL +W+ VG L + W+ GA Sbjct: 337 YSAVGNGLGAWFCTLVGGYLLERWQIGA 364
>SNX19_HUMAN (Q92543) Sorting nexin-19| Length = 992 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -2 Query: 350 PSTTPESAPQQPFSGRVSALPDSTYVRQEDRLSSAP 243 P+ PE P+QP GRV + V +D +S P Sbjct: 779 PTKAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDP 814
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1853 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = -2 Query: 377 TSPHRQAASPSTTPESAPQQPFSGRVSALPDSTYVRQEDRLSSAPVQSSSPQ 222 TSP +SP+ TP S P S R + P + +S SSPQ Sbjct: 1748 TSPQYSPSSPTYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQ 1799
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = -2 Query: 377 TSPHRQAASPSTTPESAPQQPFSGRVSALPDSTYVRQEDRLSSAPVQSSSPQ 222 TSP + +P++ Q+P PD+T D S P +SP+ Sbjct: 244 TSPESPDTTSPESPDTTSQEPPDTTSQEPPDTTSQEPPDTTSPEPPDKTSPE 295
>GLGB_PSEPK (Q88FN1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 736 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 24 HTALPVSTCQTEHGRHSPDTKKPGRR 101 H LP+S + HG+HS K PG R Sbjct: 530 HFILPISHDEVVHGKHSLIDKMPGDR 555 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.131 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,588,250 Number of Sequences: 219361 Number of extensions: 565321 Number of successful extensions: 2745 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2440 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2730 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
