ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62f08 |
|---|---|
| Clone Library Name | barley_pub |
>UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 316 Score = 35.0 bits (79), Expect = 0.095 Identities = 22/68 (32%), Positives = 27/68 (39%) Frame = -1 Query: 230 VPCTMCPGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAP 51 VP S A A + P+ G G + P PSA A +G P AS A Sbjct: 21 VPAAAAASASNAATAAAAAAPAGAGAGASKPA---------RPSAAARPAKGTPAASAAT 71 Query: 50 SVVGARAS 27 + GA AS Sbjct: 72 TATGADAS 79
>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) Length = 240 Score = 34.3 bits (77), Expect = 0.16 Identities = 24/69 (34%), Positives = 29/69 (42%) Frame = -1 Query: 233 RVPCTMCPGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIA 54 RVP G G G A VP+ V A G GV PS P+G R ++A Sbjct: 94 RVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG--RGTVA 151 Query: 53 PSVVGARAS 27 + V A AS Sbjct: 152 AAAVAATAS 160
>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 34.3 bits (77), Expect = 0.16 Identities = 24/69 (34%), Positives = 29/69 (42%) Frame = -1 Query: 233 RVPCTMCPGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIA 54 RVP G G G A VP+ V A G GV PS P+G R ++A Sbjct: 94 RVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG--RGTVA 151 Query: 53 PSVVGARAS 27 + V A AS Sbjct: 152 AAAVAATAS 160
>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 34.3 bits (77), Expect = 0.16 Identities = 24/69 (34%), Positives = 29/69 (42%) Frame = -1 Query: 233 RVPCTMCPGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIA 54 RVP G G G A VP+ V A G GV PS P+G R ++A Sbjct: 94 RVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG--RGTVA 151 Query: 53 PSVVGARAS 27 + V A AS Sbjct: 152 AAAVAATAS 160
>NIFA_AZOLI (P54929) Nif-specific regulatory protein| Length = 624 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -1 Query: 227 PCTMCPGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVP 81 P P ++ A+P+ VP G G A P C + +P GAA P Sbjct: 485 PGVPAPANAPKAPAMPAPVPEPAGAGSAWPACASGCSAGPSPVCGAAQP 533
>COBS_HALSA (Q9HPL2) Cobalamin synthase (EC 2.-.-.-)| Length = 199 Score = 32.7 bits (73), Expect = 0.47 Identities = 26/72 (36%), Positives = 33/72 (45%) Frame = -1 Query: 230 VPCTMCPGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAP 51 V C H G G S TG A PG +P GV P A A+VP +P A A Sbjct: 104 VACLAHAPHDGLG---------SQFTGNATPGALPAVAGVALPVALASVP--SPAA--AG 150 Query: 50 SVVGARASGTVT 15 ++ GA +G +T Sbjct: 151 ALAGAVGAGALT 162
>RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 32.0 bits (71), Expect = 0.81 Identities = 23/69 (33%), Positives = 28/69 (40%) Frame = -1 Query: 233 RVPCTMCPGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIA 54 RVP G G G A VP+ V A G GV PS P+G R ++A Sbjct: 94 RVPLAGAAGGPGIGRAAGRGVPAGVPMPQAPAGLAGPIRGVGGPSQQVMTPQG--RGTVA 151 Query: 53 PSVVGARAS 27 + A AS Sbjct: 152 AAAAAATAS 160
>ELN_CHICK (P07916) Elastin precursor (Tropoelastin) (Fragment)| Length = 750 Score = 32.0 bits (71), Expect = 0.81 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Frame = -1 Query: 209 GHSGAGGAVPSRVPSSVGTGGAMPGC--VPQ-TTGVVNPSAGAAVPRGNPRASIAP 51 G G GAVP VP G G PG VP GV P G G P+ + P Sbjct: 597 GVGGVPGAVPGAVPGVPGVPGVTPGVGGVPSLVPGVGVPGVGVLPGAGIPQVGVQP 652
>ELN_MOUSE (P54320) Elastin precursor (Tropoelastin)| Length = 860 Score = 32.0 bits (71), Expect = 0.81 Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 1/118 (0%) Frame = -1 Query: 380 GDPCAGGVIPGRVPCTMCPGDPCXXXXXXXXXXXXXXXXXXXXXXXXXGRVPCTMCPGHS 201 G GG++PG VP + P + + PG Sbjct: 489 GAGALGGLVPGAVPGALPGAVPAVPGAGGVPGAGTPAAAAAAAAAKAAAKAG--LGPGVG 546 Query: 200 GA-GGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGARA 30 G GG +P VG GG G P + G G+P A+ + + A+A Sbjct: 547 GVPGGVGVGGIPGGVGVGGVPGGVGPGGVTGIGAGPGGLGGAGSPAAAKSAAKAAAKA 604
>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 31.2 bits (69), Expect = 1.4 Identities = 22/69 (31%), Positives = 27/69 (39%) Frame = -1 Query: 233 RVPCTMCPGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIA 54 RVP G G G A VP+ A G GV PS P+G R ++A Sbjct: 94 RVPLAGAAGGPGVGRAAGRGVPAGAPMPQAPAGLAGPVRGVGGPSQQVMTPQG--RGTVA 151 Query: 53 PSVVGARAS 27 + A AS Sbjct: 152 AAAAAATAS 160
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 31.2 bits (69), Expect = 1.4 Identities = 24/62 (38%), Positives = 25/62 (40%) Frame = -1 Query: 212 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 33 PG GA GA P G P V G P AGAA P GNP A P GA Sbjct: 332 PGFPGAAGAKGEAGPQGA-RGSEGPQGVRGEPGPPGP-AGAAGPAGNPGADGQPGAKGAN 389 Query: 32 AS 27 + Sbjct: 390 GA 391
>DNAA_STRAW (Q82FD8) Chromosomal replication initiator protein dnaA| Length = 653 Score = 31.2 bits (69), Expect = 1.4 Identities = 24/69 (34%), Positives = 30/69 (43%) Frame = -1 Query: 209 GHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGARA 30 GH GG V S +P+S G G + TG P+A R NP+ V+G A Sbjct: 275 GHVHRGGPVGSALPASSGAPGPLAAQPAPATGPGEPTA-----RLNPKYLFDTFVIG--A 327 Query: 29 SGTVTHLAA 3 S H AA Sbjct: 328 SNRFAHAAA 336
>OSB10_HUMAN (Q9BXB5) Oxysterol-binding protein-related protein 10 (OSBP-related| protein 10) (ORP-10) Length = 764 Score = 30.8 bits (68), Expect = 1.8 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -1 Query: 209 GHSGAGGAVPSRVPSSVGTG-GAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 33 G G GG+ S SS T G+ P C GV + SA A + G R+S P V A Sbjct: 7 GTDGGGGSNSSSRSSSRATSAGSSPSCSLAGRGVSSRSAAAGLGGGGSRSS--PGSVAAS 64 Query: 32 ASG 24 SG Sbjct: 65 PSG 67
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.0 bits (66), Expect = 3.1 Identities = 24/62 (38%), Positives = 25/62 (40%) Frame = -1 Query: 212 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 33 PG GA GA P G P V G P AGAA P GNP A P GA Sbjct: 332 PGFPGAVGAKGEAGPQGA-RGSEGPQGVRGEPGPPGP-AGAAGPAGNPGADGQPGAKGAN 389 Query: 32 AS 27 + Sbjct: 390 GA 391
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 30.0 bits (66), Expect = 3.1 Identities = 24/62 (38%), Positives = 25/62 (40%) Frame = -1 Query: 212 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 33 PG GA GA P G P V G P AGAA P GNP A P GA Sbjct: 339 PGFPGAVGAKGEAGPQGA-RGSEGPQGVRGEPGPPGP-AGAAGPAGNPGADGQPGAKGAN 396 Query: 32 AS 27 + Sbjct: 397 GA 398
>MSP1_PLAYO (P13828) Merozoite surface protein 1 precursor (Merozoite surface| antigens) (PMMSA) (230 kDa) (PY230) Length = 1772 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = -1 Query: 209 GHSGAGGAVPSRVPSSVGTG--GAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGA 36 G SG GA S + GT G+ T+ V P+A AAVP + A P + Sbjct: 991 GASGTEGATASNAATPAGTSASGSAASNASTTSDVTPPAAAAAVPSTSTPAPAQPPAANS 1050 Query: 35 RA 30 ++ Sbjct: 1051 QS 1052
>PHC1_MOUSE (Q64028) Polyhomeotic-like protein 1 (mPH1) (Early development| regulatory protein 1) (RAE-28) Length = 1012 Score = 29.6 bits (65), Expect = 4.0 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = -1 Query: 230 VPCTMCPGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGA---AVPRGNPRAS 60 +P +M PG G ++PSS TGG+ C + TGVV P A V +G+ + Sbjct: 275 LPGSMGPGGGGQAPGGLGQLPSSGLTGGS---CPRKGTGVVQPLPAAQTVTVSQGSQTEA 331 Query: 59 IAPSVVGARASGT 21 + + A A G+ Sbjct: 332 ESAAAKKAEADGS 344
>BCB1_ARATH (Q07488) Blue copper protein precursor (Blue copper-binding| protein) (AtBCB) (Stellacyanin) (Phytocyanin 1) Length = 196 Score = 29.6 bits (65), Expect = 4.0 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Frame = -1 Query: 206 HSGAGGAVPSRVPSSVGTGGAMPGC--------VPQTTGVVNPSAGAAVPRGNPRASIAP 51 H G + V ++ TGGA PG P T G P+AG + P Sbjct: 112 HCRFGQKLSITVVAAGATGGATPGAGATPAPGSTPSTGGTTPPTAGGTTTPSGSSGTTTP 171 Query: 50 SVVGARASGTVTHLAA 3 + A + G T L A Sbjct: 172 AGNAASSLGGATFLVA 187
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/64 (29%), Positives = 24/64 (37%) Frame = -1 Query: 200 GAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGARASGT 21 G G P PS GTG P TG + ++ A P N A S G + T Sbjct: 1231 GGGTPAPPAPPSGPGTGAGAPPTAAPPTGGASSNSAAPSPLSNSILPPALSSQGEEFAAT 1290 Query: 20 VTHL 9 + L Sbjct: 1291 ASPL 1294
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 5.2 Identities = 25/62 (40%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Frame = -1 Query: 212 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQ-TTGVVNPS--AGAAVPRGNPRASIAPSVV 42 PG GA GA G GA PQ + G P AGAA P GNP A P Sbjct: 332 PGFPGAAGA-----KGETGPQGARGSEGPQGSRGEPGPPGPAGAAGPAGNPGADGQPGAK 386 Query: 41 GA 36 GA Sbjct: 387 GA 388
>PG36_MYCTU (P0A688) Hypothetical PE-PGRS family protein PE_PGRS36| Length = 491 Score = 29.3 bits (64), Expect = 5.2 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 6/53 (11%) Frame = -1 Query: 209 GHSGAGGAVPSRVPSSVGTGG----AMPGCVPQTTGV--VNPSAGAAVPRGNP 69 G+ GAGG+ S P SV +GG PG GV N AG A +G P Sbjct: 372 GNGGAGGSGGSGAPGSVSSGGVGGAGNPGGSGGNGGVWYGNGGAGGAAGQGGP 424
>PG36_MYCBO (P0A689) Hypothetical PE-PGRS family protein PE_PGRS36| Length = 491 Score = 29.3 bits (64), Expect = 5.2 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 6/53 (11%) Frame = -1 Query: 209 GHSGAGGAVPSRVPSSVGTGG----AMPGCVPQTTGV--VNPSAGAAVPRGNP 69 G+ GAGG+ S P SV +GG PG GV N AG A +G P Sbjct: 372 GNGGAGGSGGSGAPGSVSSGGVGGAGNPGGSGGNGGVWYGNGGAGGAAGQGGP 424
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 29.3 bits (64), Expect = 5.2 Identities = 24/62 (38%), Positives = 25/62 (40%) Frame = -1 Query: 212 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 33 PG GA GA P G P V G P AGAA P GNP A P GA Sbjct: 343 PGFPGAVGAKGEAGPQGP-RGSEGPQGVRGEPGPPGP-AGAAGPAGNPGADGQPGAKGAN 400 Query: 32 AS 27 + Sbjct: 401 GA 402
>DDI1_YEAST (P40087) DNA damage-inducible protein DDI1 (v-SNARE-master 1)| Length = 428 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = -1 Query: 170 PSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGARASGTVT 15 P+SV T P +T+ + P GA VP PR + P+ G +G T Sbjct: 334 PTSVTTSSDKPLTPTKTSSTLPPQPGA-VPALAPRTGMGPTPTGRSTAGATT 384
>Y855_TREPA (O83827) Hypothetical protein TP0855 precursor| Length = 1127 Score = 28.9 bits (63), Expect = 6.8 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = -1 Query: 194 GGAVPSRVPSSVGTGGAMPGCVPQTT-GVVNPSAGAAVPRGNPRASIAPSVVGARASGTV 18 GGA + VPS GGA P T V AGA+ AS +PS + RA+ Sbjct: 550 GGAGDTPVPSQADKGGAKQSAAPDTAQKAVAQKAGAS---EEADASSSPSEMAVRAARAQ 606 Query: 17 TH 12 H Sbjct: 607 LH 608
>ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7| Length = 920 Score = 28.9 bits (63), Expect = 6.8 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 7/70 (10%) Frame = -1 Query: 194 GGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPR-------ASIAPSVVGA 36 GGA S V V G+ PG TTG AG +P R A+ A ++ A Sbjct: 97 GGASKSYVQQGVYGRGSYPGGSSFTTGYAGGPAGLGLPTHAARPSTDFTQAAAAAAMAAA 156 Query: 35 RASGTVTHLA 6 A+ T T A Sbjct: 157 AATATATATA 166
>ELN_BOVIN (P04985) Elastin precursor (Tropoelastin)| Length = 747 Score = 28.9 bits (63), Expect = 6.8 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 14/59 (23%) Frame = -1 Query: 224 CTMCPGH-SGAGGAVPSRVPSSV----------GTGGAMPGCVPQTTGV---VNPSAGA 90 C + P G GAVP VP V G GG PG P GV V P GA Sbjct: 19 CILQPSQPGGVPGAVPGGVPGGVFFPGAGLGGLGVGGLGPGVKPAKPGVGGLVGPGLGA 77
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/51 (33%), Positives = 20/51 (39%) Frame = -1 Query: 218 MCPGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPR 66 M PG SG GG +R P M PQ G NP + P P+ Sbjct: 362 MSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQ 412
>PCDA6_PANTR (Q5DRE6) Protocadherin alpha 6 precursor (PCDH-alpha6)| Length = 950 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -1 Query: 227 PCTMCPGHSGAGGAVPSRVPSSVGTG 150 P + P G GGAV VP SVG G Sbjct: 563 PALLAPRVGGTGGAVSELVPRSVGAG 588
>PCDA5_PANTR (Q5DRE7) Protocadherin alpha 5 precursor (PCDH-alpha5)| Length = 936 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -1 Query: 227 PCTMCPGHSGAGGAVPSRVPSSVGTG 150 P + P G GGAV VP SVG G Sbjct: 562 PALLAPRVGGTGGAVSELVPRSVGAG 587
>MAVS_HUMAN (Q7Z434) Mitochondrial antiviral signaling protein (Interferon-beta| promoter stimulator protein 1) (IPS-1) (Virus-induced signaling adapter) (CARD adapter inducing interferon-beta) (Cardif) (Putative NF-kappa-B-activating protein 031N) Length = 540 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = -1 Query: 212 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVV 42 P + + VPS++P+S GA+P + + NP A + +P + RA + PS V Sbjct: 313 PANPASVSTVPSKLPTSSKPPGAVP-----SNALTNP-APSKLPINSTRAGMVPSKV 363
>PHC1_HUMAN (P78364) Polyhomeotic-like protein 1 (hPH1) (Early development| regulatory protein 1) Length = 1004 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Frame = -1 Query: 230 VPCTMCPGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGA---AVPRGNPRAS 60 +P +M PG G ++PSS G GG C + TGVV P A V +G+ + Sbjct: 275 IPGSMGPGGGGQAHGGLGQLPSS-GMGGG--SCPRKGTGVVQPLPAAQTVTVSQGSQTEA 331 Query: 59 IAPSVVGARASGT 21 + + A A G+ Sbjct: 332 ESAAAKKAEADGS 344
>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = -1 Query: 203 SGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGA 36 S A G+ PS ++ TG A +T PS P +PR + AP++ GA Sbjct: 535 SVARGSAPSPAVTAAATGTA----AAISTRAPTPSPAGRAPAADPRRAGAPALAGA 586
>PCDA4_HUMAN (Q9UN74) Protocadherin alpha 4 precursor (PCDH-alpha4)| Length = 947 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -1 Query: 227 PCTMCPGHSGAGGAVPSRVPSSVGTG 150 P + P G GGAV VP SVG G Sbjct: 563 PALLAPRAGGTGGAVSELVPWSVGVG 588
>PCDA7_PANTR (Q5DRE5) Protocadherin alpha 7 precursor (PCDH-alpha7)| Length = 937 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -1 Query: 227 PCTMCPGHSGAGGAVPSRVPSSVGTG 150 P + P G GGAV VP SVG G Sbjct: 563 PALLAPRVGGTGGAVRELVPRSVGAG 588
>PCDA7_HUMAN (Q9UN72) Protocadherin alpha 7 precursor (PCDH-alpha7)| Length = 937 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -1 Query: 227 PCTMCPGHSGAGGAVPSRVPSSVGTG 150 P + P G GGAV VP SVG G Sbjct: 563 PALLAPRVGGTGGAVRELVPRSVGAG 588
>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane| protein) Length = 2038 Score = 28.5 bits (62), Expect = 8.9 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Frame = -1 Query: 209 GHSGAGG---AVPSRVPSSVGTGGAMPG-CVPQTTGVVNPSAGAAVPRGNPRASIAPSVV 42 G +GAGG + P P S G GGA+ V G V+ +AG A P P +++ P V Sbjct: 210 GATGAGGGSSSTPGTQPGS-GAGGAIAARPVSAMGGTVSSTAGGA-PSIPPISTMPPHTV 267 Query: 41 GARASGTVTHLA 6 + T T +A Sbjct: 268 PGSTNTTTTAMA 279
>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF| hands-containing Rab-interacting protein) (Eferin) Length = 756 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -1 Query: 209 GHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPS 48 G G G A + P+ + G + G PQ+ G+ P+ GAA G R S P+ Sbjct: 23 GPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAAD-GGARWSAGPA 75
>PCDAD_PANTR (Q5DRF1) Protocadherin alpha 13 precursor (PCDH-alpha13)| Length = 950 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 227 PCTMCPGHSGAGGAVPSRVPSSVGTG 150 P + PG AGG V +P SVG G Sbjct: 563 PALLTPGAGSAGGTVSELMPRSVGAG 588
>PCDAD_HUMAN (Q9Y5I0) Protocadherin alpha 13 precursor (PCDH-alpha13)| Length = 950 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 227 PCTMCPGHSGAGGAVPSRVPSSVGTG 150 P + PG AGG V +P SVG G Sbjct: 563 PALLTPGAGSAGGTVSELMPRSVGAG 588
>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein of the| cerebellum 5) Length = 639 Score = 28.5 bits (62), Expect = 8.9 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +1 Query: 322 PGHMVQGTRPGMTPPAQGSPGH 387 P HM Q + G++PP+Q P H Sbjct: 69 PEHMAQASTLGLSPPSQAFPAH 90
>PCDA5_HUMAN (Q9Y5H7) Protocadherin alpha 5 precursor (PCDH-alpha5)| Length = 936 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -1 Query: 227 PCTMCPGHSGAGGAVPSRVPSSVGTG 150 P + P G GGAV VP SVG G Sbjct: 562 PALLVPRVGGTGGAVSELVPRSVGAG 587
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 28.5 bits (62), Expect = 8.9 Identities = 20/51 (39%), Positives = 24/51 (47%) Frame = -1 Query: 203 SGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAP 51 SG G R P+S GTG PG P G++ P GA+ G P AP Sbjct: 168 SGMGTRPTPRPPASGGTGAPRPGPRPH-PGMMPPRPGASA--GGPPRPQAP 215 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,732,591 Number of Sequences: 219361 Number of extensions: 809171 Number of successful extensions: 4037 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 3511 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4019 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
