ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62f06 |
|---|---|
| Clone Library Name | barley_pub |
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 72.4 bits (176), Expect = 4e-13 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 11/155 (7%) Frame = +3 Query: 3 LGAEPALP-YLSPYMRGDNLLVGANFASAGVGILNDTGVQFVNIIRIAQQLQNFQDYQRR 179 +G + +P YL P ++ ++LL G +FAS G G N T + N I + QL FQDY + Sbjct: 259 MGVKEIVPAYLDPKIQPNDLLTGVSFASGGAGY-NPTTSEAANAIPMLDQLTYFQDYIEK 317 Query: 180 LAAYI----------GEDAARQRVSQSLVLITLGGNDFVNNYYLVPFSARSQQFEIHDYV 329 + + G + Q +S+ + ++ G ND + Y+ A+ + +I Y Sbjct: 318 VNRLVRQEKSQYKLAGLEKTNQLISKGVAIVVGGSNDLIITYF--GSGAQRLKNDIDSYT 375 Query: 330 PFIVSEYKKVLARLYELGARRVIVTGTGMIGCVPA 434 I + +LY GARR+ V GT +GCVP+ Sbjct: 376 TIIADSAASFVLQLYGYGARRIGVIGTPPLGCVPS 410
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 71.2 bits (173), Expect = 1e-12 Identities = 38/131 (29%), Positives = 67/131 (51%) Frame = +3 Query: 42 MRGDNLLVGANFASAGVGILNDTGVQFVNIIRIAQQLQNFQDYQRRLAAYIGEDAARQRV 221 ++ +LL G +FAS G G L T + + + QL FQDY++R+ +G+ ++ V Sbjct: 200 LQQSDLLTGVSFASGGAGYLPQTSESW-KVTTMLDQLTYFQDYKKRMKKLVGKKKTKKIV 258 Query: 222 SQSLVLITLGGNDFVNNYYLVPFSARSQQFEIHDYVPFIVSEYKKVLARLYELGARRVIV 401 S+ ++ G ND + Y+ A+ + ++ + + + +LY GARR+ V Sbjct: 259 SKGAAIVVAGSNDLIYTYF--GNGAQHLKNDVDSFTTMMADSAASFVLQLYGYGARRIGV 316 Query: 402 TGTGMIGCVPA 434 GT IGC P+ Sbjct: 317 IGTPPIGCTPS 327
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 49.7 bits (117), Expect = 3e-06 Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 15/151 (9%) Frame = +3 Query: 21 LPYLSPYMR--GDNLLVGANFASAG--VGILNDT-----------GVQFVNIIRIAQQLQ 155 LPYLS ++ G N GANFA+AG + LN T VQFV + Q Sbjct: 83 LPYLSAFLDSVGSNFSHGANFATAGSPIRALNSTLRQSGFSPFSLDVQFVQFYNFHNRSQ 142 Query: 156 NFQDYQRRLAAYIGEDAARQRVSQSLVLITLGGNDFVNNYYLVPFSARSQQFEIHDYVPF 335 + R Y S++L +G ND Y+ A ++ VP Sbjct: 143 TVRS---RGGVYKTMLPESDSFSKALYTFDIGQNDLTAGYF-----ANKTVEQVETEVPE 194 Query: 336 IVSEYKKVLARLYELGARRVIVTGTGMIGCV 428 I+S++ + +Y G R + TG IGC+ Sbjct: 195 IISQFMNAIKNIYGQGGRYFWIHNTGPIGCL 225
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 47.4 bits (111), Expect = 2e-05 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 16/152 (10%) Frame = +3 Query: 21 LPYLSPYMR--GDNLLVGANFASAGVGILNDT--------------GVQFVNIIRIAQQL 152 LPYLSPY+ G N GA+FA+AG I T VQ+ + + Sbjct: 87 LPYLSPYLSSLGSNFKHGADFATAGSTIKLPTTIIPAHGGFSPFYLDVQYSQFRQFIPRS 146 Query: 153 QNFQDYQRRLAAYIGEDAARQRVSQSLVLITLGGNDFVNNYYLVPFSARSQQFEIHDYVP 332 Q ++ A + E+ ++ +L +G ND + + E++ VP Sbjct: 147 QFIRETGGIFAELVPEEYYFEK---ALYTFDIGQNDLTEGFLNLTVE------EVNATVP 197 Query: 333 FIVSEYKKVLARLYELGARRVIVTGTGMIGCV 428 +V+ + + ++Y+LGAR + TG IGC+ Sbjct: 198 DLVNSFSANVKKIYDLGARTFWIHNTGPIGCL 229
>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Smooth muscle calcium channel blocker receptor) Length = 2171 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = -1 Query: 265 TKSLPPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 86 T + PPR + CL +P+ A + WK +L +F NC +++ +P P Sbjct: 126 TATRPPRALL-------CLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAIYIPFP 178 Query: 85 ADAKLAPTSRL 53 D A S L Sbjct: 179 EDDSNATNSNL 189
>CAC1C_HUMAN (Q13936) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) Length = 2221 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = -1 Query: 265 TKSLPPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 86 T + PPR + CL +P+ A + WK +L +F NC +++ +P P Sbjct: 96 TATRPPRALL-------CLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAIYIPFP 148 Query: 85 ADAKLAPTSRL 53 D A S L Sbjct: 149 EDDSNATNSNL 159
>CAC1C_RAT (P22002) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (RAT brain class C) (RBC) Length = 2169 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = -1 Query: 265 TKSLPPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 86 T + PPR + CL +P+ A + WK +L +F NC +++ +P P Sbjct: 126 TATRPPRALL-------CLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAIYIPFP 178 Query: 85 ADAKLAPTSRL 53 D A S L Sbjct: 179 EDDSNATNSNL 189
>CAC1C_MOUSE (Q01815) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Mouse brain class C) (MBC) (MELC-CC) Length = 2139 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = -1 Query: 265 TKSLPPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 86 T + PPR + CL +P+ A + WK +L +F NC +++ +P P Sbjct: 96 TATRPPRALL-------CLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAIYIPFP 148 Query: 85 ADAKLAPTSRL 53 D A S L Sbjct: 149 EDDSNATNSNL 159
>CAC1D_CHICK (O73700) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (CHCACHA1D) Length = 2190 Score = 32.7 bits (73), Expect = 0.39 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = -1 Query: 265 TKSLPPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 86 + S PPR + CL+ ++P+ A + WK +L +F NC +++ +P P Sbjct: 93 SNSRPPRALF-------CLSLNNPIRRACISLVEWKPFDIFILLSIFANCVALAVYIPFP 145 Query: 85 AD 80 D Sbjct: 146 ED 147
>CAC1S_HUMAN (Q13698) Voltage-dependent L-type calcium channel alpha-1S subunit| (Voltage-gated calcium channel alpha subunit Cav1.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 3, skeletal muscle) Length = 1873 Score = 32.3 bits (72), Expect = 0.51 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = -1 Query: 250 PRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 80 P ++ + CL +P+ A + WK +L +F NC +++ +P P D Sbjct: 21 PEILPSPPRALFCLTLENPLRKACISIVEWKPFETIILLTIFANCVALAVYLPMPED 77
>CAC1S_MOUSE (Q02789) Voltage-dependent L-type calcium channel alpha-1S subunit| (Voltage-gated calcium channel alpha subunit Cav1.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 3, skeletal muscle) Length = 1880 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/58 (27%), Positives = 26/58 (44%) Frame = -1 Query: 253 PPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 80 PPR + CL +P+ A + WK +L +F NC +++ +P P D Sbjct: 27 PPRALF-------CLTLQNPLRKACISIVEWKPFETIILLTIFANCVALAVYLPMPED 77
>CAC1S_RABIT (P07293) Voltage-dependent L-type calcium channel alpha-1S subunit| (Voltage-gated calcium channel alpha subunit Cav1.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 3, skeletal muscle) Length = 1873 Score = 32.0 bits (71), Expect = 0.67 Identities = 15/57 (26%), Positives = 25/57 (43%) Frame = -1 Query: 250 PRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 80 P V+ CL +P+ A + WK +L +F NC +++ +P P D Sbjct: 21 PEVLPRPPRALFCLTLQNPLRKACISIVEWKPFETIILLTIFANCVALAVYLPMPED 77
>CAC1D_MESAU (Q99244) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (Calcium channel, L type, alpha-1 polypeptide isoform 2) Length = 1610 Score = 31.2 bits (69), Expect = 1.1 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -1 Query: 214 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 80 CL+ ++P+ A + WK +L +F NC +++ +P P D Sbjct: 107 CLSLNNPIRRACISIVEWKPFDIFILLAIFANCVALAIYIPFPED 151
>CAC1D_RAT (P27732) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 2) (RAT brain class D) (RBD) Length = 2203 Score = 31.2 bits (69), Expect = 1.1 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -1 Query: 214 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 80 CL+ ++P+ A + WK +L +F NC +++ +P P D Sbjct: 108 CLSLNNPIRRACISIVDWKPFDIFILLAIFANCVALAIYIPFPED 152
>CAC1D_HUMAN (Q01668) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 2) Length = 2161 Score = 31.2 bits (69), Expect = 1.1 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -1 Query: 214 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 80 CL+ ++P+ A + WK +L +F NC +++ +P P D Sbjct: 108 CLSLNNPIRRACISIVEWKPFDIFILLAIFANCVALAIYIPFPED 152
>CAC1D_DROME (Q24270) Voltage-dependent calcium channel type D alpha-1 subunit| (DmCa1D) Length = 2516 Score = 30.4 bits (67), Expect = 1.9 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = -1 Query: 214 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTP 86 CL+ +P+ A +R WK +L +F NC +++ P P Sbjct: 597 CLSVKNPLRALCIRIVEWKPFEFLILLTIFANCIALAVYTPYP 639
>K1543_MOUSE (Q80VC9) Protein KIAA1543| Length = 1252 Score = 26.2 bits (56), Expect(2) = 2.5 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -2 Query: 234 PATGSRAASPRPRRCTP 184 PATG +AASP P R P Sbjct: 746 PATGPKAASPSPARRAP 762 Score = 22.3 bits (46), Expect(2) = 2.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -1 Query: 115 TPVSLRMPTPADAKLAPTSRL 53 TP S + PA+ KLAP +R+ Sbjct: 775 TPRSPKHARPAELKLAPLTRV 795
>TAL_RHILO (Q98EV0) Probable transaldolase (EC 2.2.1.2)| Length = 218 Score = 29.6 bits (65), Expect = 3.3 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = +3 Query: 66 GANFASAGVGILNDTGVQFVNIIRIAQQLQNFQDYQRRL 182 GA+F S VG ++DTG + +I+ +Q+ + DYQ + Sbjct: 123 GASFISPFVGRIDDTGSDGMELIQEIRQIYDNYDYQTEI 161
>CAC1F_HUMAN (O60840) Voltage-dependent L-type calcium channel alpha-1F subunit| (Voltage-gated calcium channel alpha subunit Cav1.4) Length = 1966 Score = 29.6 bits (65), Expect = 3.3 Identities = 12/45 (26%), Positives = 22/45 (48%) Frame = -1 Query: 214 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 80 CL ++P+ + + WK +L +F NC + + +P P D Sbjct: 74 CLTLANPLRRSCISIVEWKPFDILILLTIFANCVALGVYIPFPED 118
>SECY_MYCGE (P47416) Preprotein translocase secY subunit| Length = 475 Score = 29.6 bits (65), Expect = 3.3 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +3 Query: 21 LPYLSPY-MRGDNLLVGANFASAGVGILNDTGVQFVNIIRIAQQLQNFQDYQRRLAAYIG 197 +PY+ Y +R N L + G+ I+ V+F++ +R A N+Q +R LA + Sbjct: 397 IPYIVSYFIRLPNSL---SLGGTGIIIIVTAVVEFISALRSAATATNYQQLRRNLAIEVQ 453 Query: 198 EDAARQRVSQ 227 + A + + Q Sbjct: 454 QTAKQDSLEQ 463
>CAC1S_RANCA (O57483) Voltage-dependent L-type calcium channel alpha-1S subunit| (Voltage-gated calcium channel alpha subunit Cav1.1) (FGalpha1S) Length = 1688 Score = 29.3 bits (64), Expect = 4.3 Identities = 15/58 (25%), Positives = 24/58 (41%) Frame = -1 Query: 253 PPRVMSTSDWLTRCLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 80 PPR + CL +P + WK +L +F NC +++ +P P D Sbjct: 27 PPRALF-------CLGLQNPFRKFCINIVEWKPFEMIILLTIFANCVALAIFLPMPED 77
>CAC1F_MOUSE (Q9JIS7) Voltage-dependent L-type calcium channel alpha-1F subunit| (Voltage-gated calcium channel alpha subunit Cav1.4) Length = 1985 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/45 (26%), Positives = 22/45 (48%) Frame = -1 Query: 214 CLAASSPMYAASLRW*SWKFCSCCAILMMFTNCTPVSLRMPTPAD 80 CL ++P+ + + WK +L +F NC + + +P P D Sbjct: 74 CLTLTNPIRRSCISIVEWKPFDILILLTIFANCVALGVYIPFPED 118
>METE_STRPN (Q97S31) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 749 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = +3 Query: 321 DYVPFIVSEYKKVLARLYELGARRV 395 D+V +V+ Y++V A+L ELGA R+ Sbjct: 178 DFVDSLVAAYQEVFAKLAELGATRI 202 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,254,925 Number of Sequences: 219361 Number of extensions: 620729 Number of successful extensions: 2018 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1994 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2014 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
