ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZNF31_HUMAN (P17040) Zinc finger protein 31 (Zinc finger protein... 31 1.7
2TFC3_YEAST (P34111) Transcription factor tau 138 kDa subunit (TF... 30 2.2
3EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosin... 29 4.8
4EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosin... 29 4.8
5EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosin... 29 6.3
6EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-... 29 6.3
7ZN690_HUMAN (Q8IWY8) Zinc finger protein 690 28 8.2

>ZNF31_HUMAN (P17040) Zinc finger protein 31 (Zinc finger protein KOX29) (Zinc|
           finger and SCAN domain-containing protein 20) (Zinc
           finger protein 360)
          Length = 977

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 81  QCKNRVDTLKKKYKAERARGGPSAWNFYGELDRLVGPTLAAAAATKKHPSSGTP 242
           QC+ R   L + Y+  ++   P    FY ELD L+    A  A      ++G P
Sbjct: 469 QCRYRFKNLLRSYRKAKSSHPPGTCPFYEELDSLMRARAAVRAMGTVREAAGLP 522



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>TFC3_YEAST (P34111) Transcription factor tau 138 kDa subunit (TFIIIC 138 kDa|
           subunit)
          Length = 1160

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 90  NRVDTLKKKYKAERARGGPSAWNFY 164
           N +D LKKK+ A R R G S W  Y
Sbjct: 772 NSLDNLKKKWTARRVRMGHSGWRAY 796



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>EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6) (HEP)
          Length = 1006

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 181 RRSSSP*KFQADGPPRARSALYFFLSVSTRFLHW 80
           R SS P +    GPP A   L+F +  S   LHW
Sbjct: 341 RASSDPPEAPCTGPPSAPQELWFEVQGSALMLHW 374



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>EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6)
          Length = 1005

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 181 RRSSSP*KFQADGPPRARSALYFFLSVSTRFLHW 80
           R SS P +    GPP A   L+F +  S   LHW
Sbjct: 340 RASSDPPEAPCTGPPSAPQELWFEVQGSALMLHW 373



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>EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6) (MEP)
          Length = 1014

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 181 RRSSSP*KFQADGPPRARSALYFFLSVSTRFLHW 80
           R SS P +    GPP A   L+F +  S   LHW
Sbjct: 351 RASSDPPEAPCTGPPSAPRELWFEVQGSALMLHW 384



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>EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6)
          Length = 1013

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 181 RRSSSP*KFQADGPPRARSALYFFLSVSTRFLHW 80
           R SS P +    GPP A   L+F +  S   LHW
Sbjct: 350 RASSDPPEAPCTGPPSAPRELWFEVQGSALMLHW 383



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>ZN690_HUMAN (Q8IWY8) Zinc finger protein 690|
          Length = 851

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 72  TDVQCKNRVDTLKKKYKAERARGGPSAWNFYGELDRLVGPTLAAAAATKKHPSSGTP 242
           T  QC+ +  +L+  Y+  +    P    F+ E+D LV   +AA     +  ++  P
Sbjct: 456 TPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDALVSVRVAAPPNDGQEETASCP 512


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,698,585
Number of Sequences: 219361
Number of extensions: 399414
Number of successful extensions: 1803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1797
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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