ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 33 0.33
2BCAR1_HUMAN (P56945) Breast cancer anti-estrogen resistance prot... 30 3.7
3SAS_DROME (Q04164) Putative epidermal cell surface receptor prec... 29 4.8
4BCAR1_RAT (Q63767) Breast cancer anti-estrogen resistance protei... 28 8.2

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 18  QPIPPSFLPSTPRRIRLLPVPEEE 89
           QP+PP+F P  PRRI L P P  +
Sbjct: 496 QPLPPTFSPPPPRRIHLPPPPHRQ 519



 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 3   PTHLHQPIPPSFLPSTPRRIRLLPVP 80
           PT+   P PP+F P  PR+I   P P
Sbjct: 525 PTYGQPPSPPTFSPPPPRQIHSPPPP 550



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>BCAR1_HUMAN (P56945) Breast cancer anti-estrogen resistance protein 1|
           (CRK-associated substrate) (p130cas)
          Length = 870

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
 Frame = +3

Query: 12  LHQPIPPS-----FLPST----PRRIRLLPVPEEEDEALHAVAGP 119
           LH P PP+      LP+T    P  + L+P P +  + L+ V GP
Sbjct: 89  LHAPAPPASQYTPMLPNTYQPQPDSVYLVPTPSKAQQGLYQVPGP 133



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>SAS_DROME (Q04164) Putative epidermal cell surface receptor precursor|
           (Stranded at second protein)
          Length = 1693

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 24  IPPSFLPSTPRRIRLLPVPEEE 89
           +PP+ LP  P   RLLP+P++E
Sbjct: 873 LPPADLPCHPALARLLPIPDDE 894



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>BCAR1_RAT (Q63767) Breast cancer anti-estrogen resistance protein 1|
           (CRK-associated substrate) (p130cas)
          Length = 968

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
 Frame = +3

Query: 3   PTHLHQPIPPS-----FLPST----PRRIRLLPVPEEEDEALHAVAGP 119
           P  +H P+PP+      LP+     P  + L+P P +  + L+   GP
Sbjct: 184 PQGVHTPVPPASQYSPMLPTAYQPQPDNVYLVPTPSKTQQGLYQAPGP 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,451,960
Number of Sequences: 219361
Number of extensions: 261942
Number of successful extensions: 1069
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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