Clone Information

BLAST Search Result

Clone Name	bast62e10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ZMAT2_MOUSE (Q9CPW7) Zinc finger matrin type 2	52	9e-07
2	ZMAT2_HUMAN (Q96NC0) Zinc finger matrin type 2	52	9e-07
3	YO14_CAEEL (P34670) Putative zinc finger protein ZK686.4	40	0.003
4	HXA9_MOUSE (P09631) Homeobox protein Hox-A9 (Hox-1.7)	36	0.049
5	HXA9_HUMAN (P31269) Homeobox protein Hox-A9 (Hox-1G)	36	0.049
6	RBM25_HUMAN (P49756) Probable RNA-binding protein 25 (RNA-bindin...	34	0.14
7	SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12 (S...	33	0.24
8	GAG_MSVMO (P03334) Gag polyprotein R65 [Contains: Core protein p...	33	0.24
9	K0853_HUMAN (Q5T200) Protein KIAA0853	33	0.41
10	K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)	32	0.54
11	RED_MOUSE (Q9Z1M8) Protein Red (Protein RER) (IK factor) (Cytoki...	32	0.70
12	PSME1_PIG (Q64L94) Proteasome activator complex subunit 1 (Prote...	32	0.70
13	PSME1_HUMAN (Q06323) Proteasome activator complex subunit 1 (Pro...	32	0.70
14	PSME1_BOVIN (Q4U5R3) Proteasome activator complex subunit 1 (Pro...	32	0.70
15	GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains:...	32	0.70
16	IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 s...	32	0.70
17	U33K_HUMAN (Q04323) UBA/UBX 33.3 kDa protein	32	0.70
18	GAG_MLVDU (P23090) Gag polyprotein [Contains: Core protein p15; ...	32	0.91
19	GAG_MLVDE (P29168) Gag polyprotein [Contains: Core protein p15; ...	32	0.91
20	PSME1_MACFA (P58238) Proteasome activator complex subunit 1 (Pro...	32	0.91
21	GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains:...	32	0.91
22	SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12 (Ser...	32	0.91
23	RED_HUMAN (Q13123) Protein Red (Protein RER) (IK factor) (Cytoki...	31	1.2
24	GAG_MLVMO (P03332) Gag polyprotein [Contains: Core protein p15; ...	31	1.2
25	PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 ...	31	1.2
26	NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD p...	31	1.6
27	GAG_MLVCB (P27460) Gag polyprotein [Contains: Core protein p15; ...	31	1.6
28	PSME1_MOUSE (P97371) Proteasome activator complex subunit 1 (Pro...	31	1.6
29	T2_MOUSE (Q06666) Octapeptide-repeat protein T2	31	1.6
30	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	31	1.6
31	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	31	1.6
32	RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U...	31	1.6
33	FIP1_MOUSE (Q9D824) Pre-mRNA 3'-end-processing factor FIP1 (FIP1...	31	1.6
34	GAG_MLVAV (P03336) Gag polyprotein [Contains: Core protein p15; ...	31	1.6
35	FIP1_RAT (Q5U317) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-l...	31	1.6
36	NELFE_HUMAN (P18615) Negative elongation factor E (NELF-E) (RD p...	30	2.0
37	GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains:...	30	2.0
38	IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 s...	30	2.0
39	SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12 (S...	30	2.0
40	PRELP_HUMAN (P51888) Prolargin precursor (Proline-arginine-rich ...	30	2.7
41	CROP_PONPY (Q5R8W6) Cisplatin resistance-associated overexpresse...	30	2.7
42	CROP_MOUSE (Q5SUF2) Cisplatin resistance-associated overexpresse...	30	2.7
43	CROP_HUMAN (O95232) Cisplatin resistance-associated overexpresse...	30	2.7
44	CROP_BOVIN (Q3SX41) Cisplatin resistance-associated overexpresse...	30	2.7
45	RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U...	30	2.7
46	GAG_MLVHO (P21435) Gag polyprotein [Contains: Core protein p15; ...	30	3.5
47	STC_DROME (P40798) Protein shuttle craft	30	3.5
48	GARP_PLAFF (P13816) Glutamic acid-rich protein precursor	29	4.5
49	PRELP_RAT (Q9EQP5) Prolargin precursor (Proline-arginine-rich en...	29	4.5
50	TRHY_RABIT (P37709) Trichohyalin	29	4.5
51	BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	29	4.5
52	U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 aux...	29	4.5
53	ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in...	29	4.5
54	RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro...	29	4.5
55	TIM_DROME (P49021) Protein timeless	29	4.5
56	CD2L1_HUMAN (P21127) PITSLRE serine/threonine-protein kinase CDC...	29	5.9
57	NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-...	29	5.9
58	MYO2_SCHPO (Q9USI6) Myosin type-2 heavy chain 1 (Myosin type II ...	29	5.9
59	CWC25_EMENI (Q5B0I1) Pre-mRNA-splicing factor cwc25	29	5.9
60	CD2L2_HUMAN (Q9UQ88) PITSLRE serine/threonine-protein kinase CDC...	29	5.9
61	TIM_DROVI (O17482) Protein timeless	29	5.9
62	RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U...	29	5.9
63	RAD50_METKA (Q8TXI4) DNA double-strand break repair rad50 ATPase	28	7.7
64	RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-ri...	28	7.7
65	GCP60_MOUSE (Q8BMP6) Golgi resident protein GCP60 (Acyl-CoA-bind...	28	7.7
66	BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	28	7.7
67	VIT6_CAEEL (P18948) Vitellogenin 6 precursor	28	7.7
68	MYS_PODCA (Q05000) Myosin heavy chain (Fragment)	28	7.7
69	U33K_MOUSE (Q922Y1) UBA/UBX 33.3 kDa protein	28	7.7
70	CD2L1_MOUSE (P24788) PITSLRE serine/threonine-protein kinase CDC...	28	7.7

>ZMAT2_MOUSE (Q9CPW7) Zinc finger matrin type 2|
          Length = 199

 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
 Frame = +3

Query: 264 SGVDNT-FRRKFDKEEYLERARQRERDEKDEARRGKDRGP--PVQRQPLKHRDYEXDLES 434
           SG  N  FRRK+DK+EY + A +R  +E+++    KD  P  PV+R+ L+HRDY+ DLES
Sbjct: 5   SGTKNLDFRRKWDKDEYEKLAEKRLTEEREK----KDGKPVQPVKRELLRHRDYKVDLES 60

Query: 435 RL 440
           +L
Sbjct: 61  KL 62

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>ZMAT2_HUMAN (Q96NC0) Zinc finger matrin type 2|
          Length = 199

 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
 Frame = +3

Query: 264 SGVDNT-FRRKFDKEEYLERARQRERDEKDEARRGKDRGP--PVQRQPLKHRDYEXDLES 434
           SG  N  FRRK+DK+EY + A +R  +E+++    KD  P  PV+R+ L+HRDY+ DLES
Sbjct: 5   SGTKNLDFRRKWDKDEYEKLAEKRLTEEREK----KDGKPVQPVKRELLRHRDYKVDLES 60

Query: 435 RL 440
           +L
Sbjct: 61  KL 62

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>YO14_CAEEL (P34670) Putative zinc finger protein ZK686.4|
          Length = 407

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKD--EARRGKDRG--PPVQRQPLKHRDYEXDLESRL 440
           RR +D++EY   A+QR  DEK+  + R GK +   P V+R+ L+ R+Y+ DL+S++
Sbjct: 207 RRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREYKVDLDSKV 262

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>HXA9_MOUSE (P09631) Homeobox protein Hox-A9 (Hox-1.7)|
          Length = 271

 Score = 35.8 bits (81), Expect = 0.049
 Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 423 HXHNPY----ASKAVFAQEGPYPCLSWLRPSHPALSVELAPSTPPCQISFGKCCPRRKDC 256
           H H+PY    A  A  A +G Y   SWL P+  ALS    PS+ P  I       RR DC
Sbjct: 85  HHHHPYVHPQAPVAAAAPDGRY-MRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDC 143

Query: 255 QT 250
            T
Sbjct: 144 PT 145

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>HXA9_HUMAN (P31269) Homeobox protein Hox-A9 (Hox-1G)|
          Length = 272

 Score = 35.8 bits (81), Expect = 0.049
 Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 423 HXHNPY----ASKAVFAQEGPYPCLSWLRPSHPALSVELAPSTPPCQISFGKCCPRRKDC 256
           H H+PY    A  A  A +G Y   SWL P+  ALS    PS+ P  I       RR DC
Sbjct: 86  HHHHPYVHPQAPVAAAAPDGRY-MRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDC 144

Query: 255 QT 250
            T
Sbjct: 145 PT 146

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>RBM25_HUMAN (P49756) Probable RNA-binding protein 25 (RNA-binding motif protein|
           25) (RNA-binding region-containing protein 7) (Protein
           S164)
          Length = 784

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           R+ ++E   ER R+RER+ + E  R ++R    +R+  K RD E D E
Sbjct: 332 REREREREREREREREREREREREREREREREREREKDKKRDREEDEE 379



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 297 DKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           D+E   ER R+RER+ + E  R ++R    +R+  + +D + D E
Sbjct: 331 DREREREREREREREREREREREREREREREREREREKDKKRDRE 375



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           R + ++E   ER R+RE++++ E  R +DR     R   K RD + D E
Sbjct: 261 RERREREREREREREREKEKERERERERDR----DRDRTKERDRDRDRE 305



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           R+ ++E   ER +++ER+ + E  R +DR     R   + RD + D E
Sbjct: 266 REREREREREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDRE 313



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           R  +K    ER R+RER+ + E  R ++R    +R+  + R+ E D
Sbjct: 324 RSREKSRDREREREREREREREREREREREREREREREREREREKD 369



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESR 437
           D    R   +E+  +R R+RER+ + E  R ++R    +R+  + R+ E + + +
Sbjct: 317 DRNKDRSRSREKSRDREREREREREREREREREREREREREREREREREREKDKK 371



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           R+ ++E+  ER R+RERD   +  + +DR    +R   + R+   D
Sbjct: 272 REREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDRERSSD 317

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>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (Splicing regulatory protein 508) (SRrp508)
          Length = 508

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +3

Query: 300 KEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           KE+  E+ R+RE++ + E  RGK++    +R+  + +D E D E
Sbjct: 275 KEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDRE 318



 Score = 33.1 bits (74), Expect = 0.31
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 297 DKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           +KE   E+ R++ER+ + E  + K+RG    R   + +D E D E
Sbjct: 270 EKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKE 314



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           +RK  +E+  E+ R +E+D + E  R K+R    +R   K RD E +
Sbjct: 260 KRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKERE 306



 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/55 (23%), Positives = 31/55 (56%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESR 437
           D    R+ D+E+  E+ R+RER+++ E  R K++     ++  + +D   +++ +
Sbjct: 300 DRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEK 354



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           R+ ++E+  ER + ++RD++ E  R KD+    +R+  K  + + D E
Sbjct: 285 REKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKE 332

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>GAG_MSVMO (P03334) Gag polyprotein R65 [Contains: Core protein p15; Inner|
           coat protein p12; Core shell protein p30; Nucleoprotein
           p10]
          Length = 537

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRD 413
           +  F ++   EE  ER R RER+EK+E RR +D     +R   +HR+
Sbjct: 427 ERIFNKRETPEEREERIR-REREEKEERRRTEDEQKEKERDRRRHRE 472

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>K0853_HUMAN (Q5T200) Protein KIAA0853|
          Length = 1668

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           R+ D+E   ER R+R+R+ + E    ++R    +R+  K RD E D
Sbjct: 683 RERDRERERERERERDREREKERELERERAREREREREKERDRERD 728



 Score = 32.0 bits (71), Expect = 0.70
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           R+ +KE  LER R RER+ + E  R ++R         + R+ E D E
Sbjct: 699 REREKERELERERAREREREREKERDRERDRDRDHDRERERERERDRE 746



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           R+ ++E   ERAR+RER+ + E  R +DR     R+  + R+ + + E
Sbjct: 701 REKERELERERAREREREREKERDRERDRDRDHDRERERERERDREKE 748



 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYE 419
           R + ++E   ER R+RER+ + E  R ++R    +RQ    RD+E
Sbjct: 751 REREERERERERERERERERERERERARERDKERERQ----RDWE 791



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKD---EARRGKDRGPPVQRQPLKHRDYEXD 425
           D+   R+ ++E   E+ R+RER+E++   E  R ++R    +R+  + RD E +
Sbjct: 732 DHDRERERERERDREKEREREREERERERERERERERERERERERARERDKERE 785



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           D    R  +++   ER R+RER+ + E  R +++   ++R+  + R+ E + E
Sbjct: 670 DRRDERARERDRERERDRERERERERERDREREKERELERERAREREREREKE 722



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 273  DNTFRRKFDKEEYLERARQRERDEKDEARRGKDR--GPPVQRQPLKHRD 413
            D  + R  D++   ER R+RERD++ +  R ++R     V+R   + RD
Sbjct: 1328 DKDWPRNRDRDRLRERERERERDKRRDLDRERERLISDSVERDRDRDRD 1376



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESR 437
           R K  + E  ER R+RER+ + E  R ++R    +R   K R+ + D E +
Sbjct: 745 REKEREREREERERERERERERERERERERERARERD--KERERQRDWEDK 793



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 270 VDNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           VD    R+ ++    +R R+R+R+ + E  R +DR    +R+  + R  E + E
Sbjct: 665 VDRVDDRRDERARERDRERERDRERERERERERDREREKERELERERARERERE 718

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>K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)|
          Length = 1157

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +3

Query: 270 VDNTFRRKFDKEEYLERARQ--RERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           +D   RR+ ++E   ER R+  RER+++ E  R K+R    +R+  K R+ E +
Sbjct: 273 MDEELRREREREREREREREADREREKEREREREKEREQEKEREREKERERELE 326



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           R + D+E   ER R+RER+ + EA R +++    +R+  + ++ E + E
Sbjct: 270 RLQMDEELRREREREREREREREADREREKEREREREKEREQEKERERE 318



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 297 DKEEYLERARQRERDEKDEARRGKDRGPPVQRQ 395
           ++E+  ER R++ER+++ E  R K+R   ++RQ
Sbjct: 296 EREKEREREREKEREQEKEREREKERERELERQ 328



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 300 KEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESRL 440
           +E   ER R+RER+   E  + ++R    +R+  K R+ E + E  L
Sbjct: 279 REREREREREREREADREREKEREREREKEREQEKEREREKEREREL 325

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>RED_MOUSE (Q9Z1M8) Protein Red (Protein RER) (IK factor) (Cytokine IK)|
          Length = 557

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYE 419
           R  ++E Y ER R RERD   E  R +DR    +R   + R+ E
Sbjct: 334 RDKERERYRERERDRERDRDRERDRERDRERERERDREREREEE 377



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +3

Query: 270 VDNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESR 437
           V +T +   DKE   ER R+RERD + +  R +DR    +R+  + R+ E + E +
Sbjct: 326 VPSTTKTPRDKER--ERYRERERDRERDRDRERDRERDRERERERDREREREEEKK 379

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>PSME1_PIG (Q64L94) Proteasome activator complex subunit 1 (Proteasome|
           activator 28-alpha subunit) (PA28alpha) (PA28a)
          Length = 249

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 13/30 (43%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
 Frame = +3

Query: 300 KEEYLERARQRERDEKDEARRG--KDRGPP 383
           ++E  ER +Q+E+++KDE ++G  +D+GPP
Sbjct: 71  EKEKEERKKQQEKEDKDEKKKGEDEDKGPP 100

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>PSME1_HUMAN (Q06323) Proteasome activator complex subunit 1 (Proteasome|
           activator 28-alpha subunit) (PA28alpha) (PA28a)
           (Activator of multicatalytic protease subunit 1) (11S
           regulator complex alpha subunit) (REG-alpha) (Interferon
           gamma up-regulated I-51
          Length = 249

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 13/30 (43%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
 Frame = +3

Query: 300 KEEYLERARQRERDEKDEARRG--KDRGPP 383
           ++E  ER +Q+E+++KDE ++G  +D+GPP
Sbjct: 71  EKEKEERKKQQEKEDKDEKKKGEDEDKGPP 100

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>PSME1_BOVIN (Q4U5R3) Proteasome activator complex subunit 1 (Proteasome|
           activator 28-alpha subunit) (PA28alpha) (PA28a)
          Length = 249

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 13/30 (43%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
 Frame = +3

Query: 300 KEEYLERARQRERDEKDEARRG--KDRGPP 383
           ++E  ER +Q+E+++KDE ++G  +D+GPP
Sbjct: 71  EKEKEERRKQQEKEDKDEKKKGEDEDKGPP 100

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>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRD 413
           +  F ++   EE  ER R RE +EK+E RR +D     +R   +HR+
Sbjct: 427 EKIFNKRETPEEREERVR-RETEEKEERRRAEDERREKERDRRRHRE 472

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>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3|
            theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a)
          Length = 1382

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 273  DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRG 377
            DN  R + DK+   ER R+R+ D +D  RR +D G
Sbjct: 1212 DNQDREENDKDPERERDRERDVDREDRFRRPRDEG 1246

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>U33K_HUMAN (Q04323) UBA/UBX 33.3 kDa protein|
          Length = 297

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQP 398
           RR+   EE   R R RE+ E+D+A R K  G  V  QP
Sbjct: 150 RRREKAEELAARQRVREKIERDKAERAKKYGGSVGSQP 187

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>GAG_MLVDU (P23090) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 528

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRD 413
           +  F ++   EE  ER R RE +EK+E RR +D     +R   +HR+
Sbjct: 418 EKIFNKRETPEEREERIR-RETEEKEERRRAEDEQREKERDRRRHRE 463

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>GAG_MLVDE (P29168) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 535

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRD 413
           +  F ++   EE  ER R RE +EK+E RR +D     +R   +HR+
Sbjct: 425 EKIFNKRETPEEREERIR-RETEEKEERRRAEDEQREKERDRRRHRE 470

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>PSME1_MACFA (P58238) Proteasome activator complex subunit 1 (Proteasome|
           activator 28-alpha subunit) (PA28alpha) (PA28a)
           (Activator of multicatalytic protease subunit 1) (11S
           regulator complex alpha subunit) (REG-alpha)
          Length = 249

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 13/30 (43%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
 Frame = +3

Query: 300 KEEYLERARQRERDEKDEARRG--KDRGPP 383
           ++E  ER +Q+E+++KDE ++G  +D+GPP
Sbjct: 71  EKEKGERKKQQEKEDKDEKKKGEDEDKGPP 100

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>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 538

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRD 413
           +  F ++   EE  ER R RE +EK+E RR +D     +R   +HR+
Sbjct: 428 EKIFNKRETPEEREERIR-RETEEKEERRRAEDEQREKERDRRRHRE 473

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>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (SR-related protein of 86 kDa)
          Length = 494

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 300 KEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           KE   ER R++E++ + E  + K+RG    +   K +D+E +
Sbjct: 272 KERVKEREREKEKEREKEREKDKERGKNKDKDREKEKDHEKE 313



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 297 DKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           ++E   E+ R++ER++  E  + KD+    ++   K RD E + E
Sbjct: 277 EREREKEKEREKEREKDKERGKNKDKDREKEKDHEKERDKEKEKE 321

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>RED_HUMAN (Q13123) Protein Red (Protein RER) (IK factor) (Cytokine IK)|
          Length = 557

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +3

Query: 270 VDNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESR 437
           V +T +   DKE   ER R+RERD + +  R ++R     R+  + RD E + E +
Sbjct: 326 VPSTTKTPRDKER--ERYRERERDRERDRDRDRERERERDRERERERDREREEEKK 379

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>GAG_MLVMO (P03332) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 537

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRD 413
           +  F ++   EE  ER R RE +EK+E RR +D     +R   +HR+
Sbjct: 427 EKIFNKRETPEEREERIR-RETEEKEERRRTEDEQKEKERDRRRHRE 472

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>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 504

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +3

Query: 291 KFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESR 437
           K D+E   +R R RER+     RR +DR     R P + RD E D   R
Sbjct: 417 KRDRERSPKRERDRERERDRSPRRDRDR--ERDRSPRRDRDRERDDHDR 463

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>NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD protein)|
          Length = 375

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERD-EKDEAR-RGKDRGPPVQRQPLKHRDYEXDLE 431
           D +  R  DKE   +R R R+RD +KD+ R R +DR     R   + RD E D E
Sbjct: 193 DRSRDRDRDKERDRDRDRDRDRDRDKDKDRDRDRDRDKERDRDRDRDRDRERDRE 247



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           D +  R  D++   ER R R+RD   +  + KDR     R   + RD + D
Sbjct: 189 DRSHDRSRDRDRDKERDRDRDRDRDRDRDKDKDRDRDRDRDKERDRDRDRD 239

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>GAG_MLVCB (P27460) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 535

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRD 413
           +  F ++   EE  ER + RE +EK+E RR +D     +R   +HR+
Sbjct: 425 EKIFNKRETPEEREERIK-RETEEKEERRRAEDEQKEKERDRRRHRE 470

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>PSME1_MOUSE (P97371) Proteasome activator complex subunit 1 (Proteasome|
           activator 28-alpha subunit) (PA28alpha) (PA28a)
           (Activator of multicatalytic protease subunit 1) (11S
           regulator complex alpha subunit) (REG-alpha)
          Length = 249

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
 Frame = +3

Query: 300 KEEYLERARQRERDEKDEARRGK--DRGPP 383
           ++E  ER +Q+E++EK+E ++G   D+GPP
Sbjct: 71  EKEKEERKKQQEKEEKEEKKKGDEDDKGPP 100

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>T2_MOUSE (Q06666) Octapeptide-repeat protein T2|
          Length = 185

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 315 ERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYE 419
           ER R+R+R  + E +RG++RG   +R+  + R  E
Sbjct: 26  ERQRERQRGREAERQRGRERGREAEREAERQRGRE 60

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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 297 DKEEYLERARQRERDEKDEARRGKDRGP 380
           DKE+  +R R RERD++D+AR  ++  P
Sbjct: 10  DKEKDRDRDRDRERDKRDKARESENARP 37

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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-2)
          Length = 1558

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 297 DKEEYLERARQRERDEKDEARRGKDRGP 380
           DKE+  +R R RERD++D+AR  ++  P
Sbjct: 10  DKEKDRDRDRDRERDKRDKARESENARP 37

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>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 267 GVDNTFRRKFDKEEYLERARQRERD-EKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           G+D    ++  +E+  ER R+R+RD EK E  R KDR     R+   HRD + +
Sbjct: 335 GIDGIELKQEPEEKSRERDRERDRDREKGEKDRDKDRDRDRDRR-RSHRDRDRE 387

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>FIP1_MOUSE (Q9D824) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
          Length = 581

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 261 PSGVDNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDY 416
           PS VD T +  +      +R R RERD   E  R +DR     R+  + RD+
Sbjct: 427 PSLVDTTKQWDYYARREKDRDRDRERDRDRERERDRDRERERTRERERERDH 478

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>GAG_MLVAV (P03336) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 536

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRD 413
           +  F ++   EE  ER R RE +EK+E RR ++     +R   +HR+
Sbjct: 426 ERIFNKRETPEEREERVR-RETEEKEERRRAEEEQKEKERDRRRHRE 471

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>FIP1_RAT (Q5U317) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
          Length = 536

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 261 PSGVDNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDY 416
           PS VD T +  +      +R R RERD   E  R +DR     R+  + RD+
Sbjct: 382 PSLVDTTKQWDYYARREKDRDRDRERDRDRERERDRDRERERTRERERERDH 433

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>NELFE_HUMAN (P18615) Negative elongation factor E (NELF-E) (RD protein)|
          Length = 380

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           D +  R  D++   ER R R+RD   E  R +DR     R+  + RD E D
Sbjct: 189 DRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRE--RDRDRERD 237



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           R  D++   +R R R+RD + +  R +DR    +R   + RD + D E
Sbjct: 196 RDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRDRE 243



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARRGKDRGPPVQR 392
           R+ D++   +R R RERD   E  R +DR  P +R
Sbjct: 214 RERDRDRDRDRDRDRERDRDRERDRDRDREGPFRR 248

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>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRD 413
           +  F ++   EE  ER R RE +EK+E RR +D     +R   +HR+
Sbjct: 427 EKIFNKRETPEEREERIR-RETEEKEERRRAEDVQREKERDRRRHRE 472

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>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3|
            theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162
            protein) (Centrosomin)
          Length = 1344

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 273  DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRG 377
            DN  R + DK+   +R R+R+ D +D  RR +D G
Sbjct: 1173 DNQDREENDKDLERDRDRERDGDREDRFRRPRDEG 1207

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>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86)
          Length = 494

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 297 DKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           +KE   ER R+++R++  E  + KD+    ++   K RD E + E
Sbjct: 277 EKEREKEREREKDREKDKERGKNKDKDREKEKDHEKERDKEKEKE 321



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 300 KEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           KE   E+ R++ER+ + +  + K+RG    +   K +D+E +
Sbjct: 272 KERVKEKEREKEREREKDREKDKERGKNKDKDREKEKDHEKE 313



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           +RK  +E+  ER +++ER++  E  R KDR    +R   K +D E +
Sbjct: 263 KRKDTREKVKERVKEKEREK--EREREKDREKDKERGKNKDKDREKE 307

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>PRELP_HUMAN (P51888) Prolargin precursor (Proline-arginine-rich end|
           leucine-rich repeat protein)
          Length = 382

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 375 PYPCLSWLRPSHPALSVELAPSTPPCQISFGKCCPRRKDCQTSCP 241
           P P  S+ +P  PA   +L P  PP   S    CPR   C    P
Sbjct: 40  PRPTPSFPQPDEPAEPTDLPPPLPPGPPSIFPDCPRECYCPPDFP 84

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>CROP_PONPY (Q5R8W6) Cisplatin resistance-associated overexpressed protein|
          Length = 432

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESR 437
           D   +++  + E  E+ R+RER+E++  RR ++     +R+  + RD E    SR
Sbjct: 244 DERLKKEKQEREEREKEREREREERERKRRREEE----EREKERARDRERRKRSR 294

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>CROP_MOUSE (Q5SUF2) Cisplatin resistance-associated overexpressed protein|
          Length = 432

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESR 437
           D   +++  + E  E+ R+RER+E++  RR ++     +R+  + RD E    SR
Sbjct: 244 DERLKKEKQEREEREKEREREREERERKRRREEE----EREKERARDRERRKRSR 294

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>CROP_HUMAN (O95232) Cisplatin resistance-associated overexpressed protein|
           (cAMP regulatory element associated protein 1)
           (CRE-associated protein 1) (CREAP-1) (Luc7A) (Okadaic
           acid-inducible phosphoprotein OA48-18)
          Length = 432

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESR 437
           D   +++  + E  E+ R+RER+E++  RR ++     +R+  + RD E    SR
Sbjct: 244 DERLKKEKQEREEREKEREREREERERKRRREEE----EREKERARDRERRKRSR 294

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>CROP_BOVIN (Q3SX41) Cisplatin resistance-associated overexpressed protein|
          Length = 432

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESR 437
           D   +++  + E  E+ R+RER+E++  RR ++     +R+  + RD E    SR
Sbjct: 244 DERLKKEKQEREEREKEREREREERERKRRREEE----EREKERARDRERRKRSR 294

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>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRER------DEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           R+ DKE    R+R RER       EK+E +R ++R     +   K +D E D
Sbjct: 237 RERDKERERRRSRSRERRRRSRSREKEERKRSRERSRDKDKDKDKDKDKEKD 288



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEAR---RGKDRGPPVQRQPLKHRDYEXDLESR 437
           RR+    E   R+R RE++E+  +R   R KD+     +   K +D + D + R
Sbjct: 245 RRRSRSRERRRRSRSREKEERKRSRERSRDKDKDKDKDKDKEKDKDKDRDRKRR 298

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>GAG_MLVHO (P21435) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 539

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRD 413
           +  F ++   EE  ER R RE +EK+E RR ++     +R   +HR+
Sbjct: 429 ERIFNKRETPEEREERIR-RETEEKEERRRAENEQREKERDRRRHRE 474

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>STC_DROME (P40798) Protein shuttle craft|
          Length = 1106

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYLERARQRERDEKDEARRGKDR-----GPPVQRQPLKHRDYEXDLESR 437
           ++ + R+ ++E   +R R+R+RD   +  R +DR       P   +  +  DY  D E R
Sbjct: 230 NHNYERERERERDRDRDRERDRDRDRDRDRDRDRDRDRDSRPGNTRQQRRSDYRDDREDR 289

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>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor|
          Length = 678

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 258 NPSGVDNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHR 410
           N    +N+  +K DK+E   +  ++E+ EK + +  KD+     ++  KH+
Sbjct: 109 NDKDNENSVDKKKDKKEKKHKKDKKEKKEKKDKKEKKDKKEKKHKKEKKHK 159

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>PRELP_RAT (Q9EQP5) Prolargin precursor (Proline-arginine-rich end|
           leucine-rich repeat protein)
          Length = 377

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 375 PYPCLSWLRPSHPALSVELAPSTPPCQISFGKCCPRRKDCQTSCP 241
           P P  S+ +P  PA   +L P  PP   S    CPR   C    P
Sbjct: 35  PRPTPSFPQPHEPAEPTDLPPPLPPGPPSVFPDCPRECYCPPDFP 79

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>TRHY_RABIT (P37709) Trichohyalin|
          Length = 1407

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
 Frame = +3

Query: 273 DNTFRRKFDKEEYL-------ERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           D   RR++ K+E         E+ ++RER E+  +R+ +D+   +QRQ L+ R  E +
Sbjct: 130 DEPERRRWQKQEQERELAEEEEQRKKRERFEQHYSRQYRDKEQRLQRQELEERRAEEE 187

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>BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
           finger protein 20)
          Length = 975

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 276 NTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           N  + K D+EE     R++ER+ + E  + K+R    ++Q LK  + E D
Sbjct: 558 NEIKSKRDEEERERERREKEREREREREKEKER--EREKQKLKESEKERD 605

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>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 488

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEK----DEARRGKDRGPPVQRQPLKHRDYE 419
           R   +E   +R+R R RD++    D+ RR + + P   R+P K+R ++
Sbjct: 84  RSRSRERRRDRSRDRNRDDRRGGRDDDRRREPQEPAKPREPKKYRFWD 131

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>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus|
            (Acinus)
          Length = 1341

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 285  RRKFDKEEYLERARQRERDEKDEAR---RGKDRGPPVQRQPLK 404
            RR+  +E   ER R+RERD  D  R   R ++RG    R+  K
Sbjct: 1280 RREHSRERDRERERERERDRGDRDRDRERDRERGRERDRRDTK 1322

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>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 297 DKEEYLERARQRERDEKDEARRGKDRGP 380
           DKE+  +R R RER+++D+AR  ++  P
Sbjct: 10  DKEKDRDRDRDREREKRDKARESENSRP 37

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>TIM_DROME (P49021) Protein timeless|
          Length = 1421

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 318 APSTPPCQISFGKCCPRRKDCQTS 247
           +P     Q++ GKCCP++++C +S
Sbjct: 492 SPHAGQLQLTKGKCCPQKRECPSS 515

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>CD2L1_HUMAN (P21127) PITSLRE serine/threonine-protein kinase CDC2L1 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 1) (CLK-1) (CDK11) (p58 CLK-1)
          Length = 795

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           RR+ D+ E LER R+RER  +++ +  +++    +R   + ++ E   E
Sbjct: 162 RRERDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARRE 210

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>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 255  GNPSGVDNTFRRKFDKEEYLERARQRERDEKDEARRGKDR 374
            G+P+ + N+   + ++E   ER R RER EK++  R  DR
Sbjct: 1756 GHPAHLANSVSAERERERERERERDRER-EKEQRERESDR 1794

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>MYO2_SCHPO (Q9USI6) Myosin type-2 heavy chain 1 (Myosin type II heavy chain 1)|
          Length = 1526

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 297  DKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESRL 440
            DKEE L R ++R  + +D     K +   +QR+    +    +LES L
Sbjct: 877  DKEEILRRTQERLANIEDSFSETKQQNENLQRESASLKQINNELESEL 924

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>CWC25_EMENI (Q5B0I1) Pre-mRNA-splicing factor cwc25|
          Length = 415

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
 Frame = +3

Query: 288 RKFDKEEYLERARQRERDEKDEARR-----------------GKDRGPPVQRQPLKHRDY 416
           R+ ++E+  ER ++RER+     RR                  + R P V++   +HRD 
Sbjct: 162 RRREREQGRERHQERERERGHRHRRDSGNDSHRSHRHRRRSRSRSRSPRVEKDDRRHRDR 221

Query: 417 EXDLES 434
           E D  S
Sbjct: 222 EHDRRS 227

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>CD2L2_HUMAN (Q9UQ88) PITSLRE serine/threonine-protein kinase CDC2L2 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 2) (CDK11)
          Length = 780

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           RR+ D+ E LER R+RER  +++ +  +++    +R   + ++ E   E
Sbjct: 150 RRERDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARRE 198

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>TIM_DROVI (O17482) Protein timeless|
          Length = 1343

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 318 APSTPPCQISFGKCCPRRKDCQTSCPVH 235
           +P     Q+  GKCCP++++C +S   H
Sbjct: 436 SPHAGQLQLIKGKCCPQKRECPSSQSEH 463

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>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 427

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = +3

Query: 297 DKEEYLERARQRERDEKDEARRGKDRGPPV-------QRQPLKHRDYE 419
           D++    R R R RD  D  RR +DRG           R   K RDYE
Sbjct: 309 DRDRDSRRDRDRTRDRGDRDRRDRDRGRDRTSRDHDRDRSRKKERDYE 356

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>RAD50_METKA (Q8TXI4) DNA double-strand break repair rad50 ATPase|
          Length = 876

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 297 DKEEYLERARQRERDEKDEARRGKDRGPPVQRQ 395
           D E+ LER + RE D + E R  KDR   V+R+
Sbjct: 450 DAEKELERLQGREEDLRKERRELKDRLESVRRE 482

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>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)|
          Length = 452

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYE 419
           RR   ++   ER+R R +D K + +R + R P       K RD E
Sbjct: 354 RRSKSRDRKRERSRSRSKDRKRDKKRSRSRSPE------KRRDKE 392

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>GCP60_MOUSE (Q8BMP6) Golgi resident protein GCP60 (Acyl-CoA-binding|
           domain-containing protein 3) (Golgi phosphoprotein 1)
           (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1)
           (PBR- and PKA-associated protein 7) (Peripherial
           benzodiazepine receptor-asso
          Length = 524

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXD 425
           RRK ++E       +RER +K+E +R +++   ++R+  + R  E +
Sbjct: 185 RRKAEEERRQREEEERERLQKEEEKRKREKEDRLRREEEERRRIEEE 231

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>BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
           finger protein 20)
          Length = 984

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLESR 437
           R + ++E   E+ +++ER+ + E  + K+R    +R+  K ++ E + ES+
Sbjct: 571 RERREREREREKEKEKEREREKEKEKEKER----EREKQKQKESEKERESK 617

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>VIT6_CAEEL (P18948) Vitellogenin 6 precursor|
          Length = 1650

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +3

Query: 276  NTFRRKFDKEEYLERARQRERDEKD------EARRGKDRGPPVQ 389
            N  R  F+KEE  +R  + + +EKD      E+RR +D  P  Q
Sbjct: 1515 NYEREMFEKEENFQRIEKNQEEEKDQEMNYEESRREQDDEPTEQ 1558

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>MYS_PODCA (Q05000) Myosin heavy chain (Fragment)|
          Length = 692

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 303 EEYLERARQRERDEKDEARRGKDRGPPVQRQP 398
           E  L++ARQR R     A RG  R P   R P
Sbjct: 651 EAALQKARQRARGASGSATRGASRAPSQPRTP 682

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>U33K_MOUSE (Q922Y1) UBA/UBX 33.3 kDa protein|
          Length = 297

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPV 386
           RR+   EE   R R RE+ E+D+A R K  G  V
Sbjct: 150 RRREKAEELAARQRVREKIERDKAERAKKYGGSV 183

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>CD2L1_MOUSE (P24788) PITSLRE serine/threonine-protein kinase CDC2L1 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 1)
          Length = 784

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 285 RRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEXDLE 431
           RR+ D+ E LER R+RER  +++ +  +++    +R   + ++ E   E
Sbjct: 162 RRERDRLEQLERKRERERKLREQQKEQREQKERERRAEERRKEREARRE 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,881,701
Number of Sequences: 219361
Number of extensions: 724782
Number of successful extensions: 3864
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 3168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3649
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result