ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
2ref|NM_185077.1| Oryza sativa (japonica cultivar-group), mRNA 186 4e-44
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 105 1e-19
4gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 105 1e-19
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
6gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genom... 105 1e-19
7gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 62 2e-06
8ref|NM_111450.2| Arabidopsis thaliana nucleic acid binding / zin... 46 0.096
9gb|AC012393.5|ATAC012393 Arabidopsis thaliana chromosome III BAC... 46 0.096
10gb|AY052735.1| Arabidopsis thaliana AT3g05760/F10A16_5 mRNA, com... 46 0.096
11gb|AY039526.1| Arabidopsis thaliana AT3g05760/F10A16_5 mRNA, com... 46 0.096
12gb|AC080013.17| Homo sapiens 3 BAC RP11-379F4 (Roswell Park Canc... 44 0.38
13gb|AC154472.2| Mus musculus BAC clone RP24-120L6 from chromosome... 42 1.5
14gb|AC154048.1| Drosophila melanogaster clone BACR29A04, complete... 40 5.9
15gb|AC154042.1| Drosophila melanogaster clone BACR46E23, complete... 40 5.9
16ref|XM_470049.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
17gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.9
18gb|AC069469.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 5.9
19gb|AC118069.8| Rattus norvegicus 9 BAC CH230-343O14 (Children's ... 40 5.9
20gb|AC079216.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 5.9
21gb|AC126057.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
22ref|NM_015117.1| Homo sapiens zinc finger CCCH-type containing 3... 40 5.9
23emb|AL589733.20| Human DNA sequence from clone RP11-164L23 on ch... 40 5.9
24emb|AL157699.13| Human DNA sequence from clone RP13-55H22 on chr... 40 5.9
25emb|AL079341.19|HSDJ319M7 Human DNA sequence from clone RP1-319M... 40 5.9
26gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
27gb|AC012180.6| Homo sapiens chromosome 16 clone RP11-31I10, comp... 40 5.9
28gb|BC038670.1| Homo sapiens zinc finger CCCH-type containing 3, ... 40 5.9
29gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, com... 40 5.9
30emb|AL031718.11|HS371H6 Human DNA sequence from clone LA16-371H6... 40 5.9
31gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
32gb|AE006639.1| Homo sapiens 16p13.3 sequence section 7 of 8 40 5.9
33gb|AC067930.7| Homo sapiens chromosome 8, clone RP11-661A12, com... 40 5.9
34gb|AC023946.5| Homo sapiens chromosome 11, clone RP11-567I13, co... 40 5.9
35ref|NM_167302.1| Drosophila melanogaster CG1841-RB, transcript v... 40 5.9
36dbj|D63484.1| Homo sapiens mRNA for KIAA0150 gene, partial cds 40 5.9
37ref|NM_132515.2| Drosophila melanogaster CG1841-RA, transcript v... 40 5.9
38gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
39gb|AY069304.1| Drosophila melanogaster HL07962 full length cDNA 40 5.9
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
41dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
42dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
43gb|AC104031.6| Homo sapiens chromosome 11, clone RP11-483L5, com... 40 5.9
44gb|AC092903.11| Homo sapiens 3 BAC RP11-666A20 (Roswell Park Can... 40 5.9
45gb|AC103705.5| Homo sapiens chromosome 8, clone RP11-55J15, comp... 40 5.9
46gb|AC135377.3| Mus musculus BAC clone RP24-66B2 from chromosome ... 40 5.9
47dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
48dbj|AK103214.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
49gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 ... 40 5.9
50gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.9
51gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
52gb|M15850.1|CHKVIM1 Chicken vimentin gene, exons 1 and 2 40 5.9 
>dbj|AK059869.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-E08, full
           insert sequence
          Length = 1194

 Score =  204 bits (103), Expect = 2e-49
 Identities = 195/226 (86%)
 Strand = Plus / Plus

                                                                       
Query: 215 caggtagcagctgcttggtggtggacagggcaagatgtctggcaatccttccggcgtgga 274
           ||||||||||||||||||  |||| ||| |||| |||||| |||||||    || || ||
Sbjct: 244 caggtagcagctgcttggcagtgggcagagcaacatgtctagcaatccggttggtgtcga 303

                                                                       
Query: 275 caacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagaga 334
            ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 304 taacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagaggga 363

                                                                       
Query: 335 gcgggatgagaaggacgaagccaggagaggcaaggataggggccctcctgtgcaaagaca 394
           |||||| |||||||| |||||  ||| ||||||||| | |||||||||||||||||| ||
Sbjct: 364 gcgggaggagaaggaagaagcgcggaaaggcaaggaaaagggccctcctgtgcaaaggca 423

                                                         
Query: 395 gcctttgaagcatagggattatgaangtgatcttgagtctcgtctt 440
            ||||||||||||||||| ||||||  ||| |||||||| ||||||
Sbjct: 424 acctttgaagcatagggactatgaagttgaccttgagtcccgtctt 469
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>ref|NM_185077.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 935

 Score =  186 bits (94), Expect = 4e-44
 Identities = 147/165 (89%)
 Strand = Plus / Plus

                                                                       
Query: 276 aacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagagag 335
           ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 28  aacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagagggag 87

                                                                       
Query: 336 cgggatgagaaggacgaagccaggagaggcaaggataggggccctcctgtgcaaagacag 395
           ||||| |||||||| |||||  ||| ||||||||| | |||||||||||||||||| || 
Sbjct: 88  cgggaggagaaggaagaagcgcggaaaggcaaggaaaagggccctcctgtgcaaaggcaa 147

                                                        
Query: 396 cctttgaagcatagggattatgaangtgatcttgagtctcgtctt 440
           ||||||||||||||||| ||||||  ||| |||||||| ||||||
Sbjct: 148 cctttgaagcatagggactatgaagttgaccttgagtcccgtctt 192
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Plus

                                                                            
Query: 276      aacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagagag 335
                ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 34638472 aacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagagggag 34638531

                             
Query: 336      cgggatgagaagg 348
                ||||| |||||||
Sbjct: 34638532 cgggaggagaagg 34638544



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                            
Query: 374      gggccctcctgtgcaaagacagcctttgaagcatagggattatgaangtgatcttgagtc 433
                |||||||||||||||||| || ||||||||||||||||| ||||||  ||| ||||||||
Sbjct: 34638775 gggccctcctgtgcaaaggcaacctttgaagcatagggactatgaagttgaccttgagtc 34638834

                       
Query: 434      tcgtctt 440
                 ||||||
Sbjct: 34638835 ccgtctt 34638841



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 216      aggtagcagctgcttggtggtggacagggcaagatgtctggcaat 260
                |||||||||||||||||  |||| ||| |||| |||||| |||||
Sbjct: 34638323 aggtagcagctgcttggcagtgggcagagcaacatgtctagcaat 34638367
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>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
             sequence
          Length = 164236

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Plus

                                                                         
Query: 276   aacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagagag 335
             ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 96189 aacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagagggag 96248

                          
Query: 336   cgggatgagaagg 348
             ||||| |||||||
Sbjct: 96249 cgggaggagaagg 96261



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                         
Query: 374   gggccctcctgtgcaaagacagcctttgaagcatagggattatgaangtgatcttgagtc 433
             |||||||||||||||||| || ||||||||||||||||| ||||||  ||| ||||||||
Sbjct: 96492 gggccctcctgtgcaaaggcaacctttgaagcatagggactatgaagttgaccttgagtc 96551

                    
Query: 434   tcgtctt 440
              ||||||
Sbjct: 96552 ccgtctt 96558



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 216   aggtagcagctgcttggtggtggacagggcaagatgtctggcaat 260
             |||||||||||||||||  |||| ||| |||| |||||| |||||
Sbjct: 96040 aggtagcagctgcttggcagtgggcagagcaacatgtctagcaat 96084
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Plus

                                                                            
Query: 276      aacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagagag 335
                ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 34728544 aacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagagggag 34728603

                             
Query: 336      cgggatgagaagg 348
                ||||| |||||||
Sbjct: 34728604 cgggaggagaagg 34728616



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                            
Query: 374      gggccctcctgtgcaaagacagcctttgaagcatagggattatgaangtgatcttgagtc 433
                |||||||||||||||||| || ||||||||||||||||| ||||||  ||| ||||||||
Sbjct: 34728847 gggccctcctgtgcaaaggcaacctttgaagcatagggactatgaagttgaccttgagtc 34728906

                       
Query: 434      tcgtctt 440
                 ||||||
Sbjct: 34728907 ccgtctt 34728913



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 216      aggtagcagctgcttggtggtggacagggcaagatgtctggcaat 260
                |||||||||||||||||  |||| ||| |||| |||||| |||||
Sbjct: 34728395 aggtagcagctgcttggcagtgggcagagcaacatgtctagcaat 34728439
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>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence,
            complete sequence
          Length = 129302

 Score =  105 bits (53), Expect = 1e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                        
Query: 276  aacactttccgaaggaaatttgacaaggaggagtacttggagcgagctcgacagagagag 335
            ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 4861 aacactttccggaggaaatttgacaaggaggagtacttggaacgagctcggcagagggag 4802

                         
Query: 336  cgggatgagaagg 348
            ||||| |||||||
Sbjct: 4801 cgggaggagaagg 4789



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                        
Query: 374  gggccctcctgtgcaaagacagcctttgaagcatagggattatgaangtgatcttgagtc 433
            |||||||||||||||||| || ||||||||||||||||| ||||||  ||| ||||||||
Sbjct: 4558 gggccctcctgtgcaaaggcaacctttgaagcatagggactatgaagttgaccttgagtc 4499

                   
Query: 434  tcgtctt 440
             ||||||
Sbjct: 4498 ccgtctt 4492



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 216  aggtagcagctgcttggtggtggacagggcaagatgtctggcaat 260
            |||||||||||||||||  |||| ||| |||| |||||| |||||
Sbjct: 5010 aggtagcagctgcttggcagtgggcagagcaacatgtctagcaat 4966
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>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 71    ccgctcgctcgcctctaggcccggagccgctgctccgccctgtccgctcgcctcc 125
             |||| |||||||||| ||||||||||| |||||||||||| | | ||||||||||
Sbjct: 55564 ccgcccgctcgcctccaggcccggagctgctgctccgccccgcctgctcgcctcc 55510



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   ccacgccggagtttgctcagg 218
             |||||||||||||||||||||
Sbjct: 55432 ccacgccggagtttgctcagg 55412



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 114   ccgctcgcctcctgtcccgcagcagctgctccgccc 149
             |||||||||||| | |||| ||| ||||||||||||
Sbjct: 55560 ccgctcgcctccaggcccggagctgctgctccgccc 55525
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>ref|NM_111450.2| Arabidopsis thaliana nucleic acid binding / zinc ion binding
           AT3G05760 mRNA, complete cds
          Length = 1300

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 378 cctcctgtgcaaagacagcctttgaagcatagggattat 416
           |||||||||||||||   |||||||||||||| ||||||
Sbjct: 211 cctcctgtgcaaagagcccctttgaagcatagagattat 249
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>gb|AC012393.5|ATAC012393 Arabidopsis thaliana chromosome III BAC F10A16 genomic sequence,
             complete sequence
          Length = 87045

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 378   cctcctgtgcaaagacagcctttgaagcatagggattat 416
             |||||||||||||||   |||||||||||||| ||||||
Sbjct: 13214 cctcctgtgcaaagagcccctttgaagcatagagattat 13252
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>gb|AY052735.1| Arabidopsis thaliana AT3g05760/F10A16_5 mRNA, complete cds
          Length = 609

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 378 cctcctgtgcaaagacagcctttgaagcatagggattat 416
           |||||||||||||||   |||||||||||||| ||||||
Sbjct: 133 cctcctgtgcaaagagcccctttgaagcatagagattat 171
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>gb|AY039526.1| Arabidopsis thaliana AT3g05760/F10A16_5 mRNA, complete cds
          Length = 815

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 378 cctcctgtgcaaagacagcctttgaagcatagggattat 416
           |||||||||||||||   |||||||||||||| ||||||
Sbjct: 211 cctcctgtgcaaagagcccctttgaagcatagagattat 249
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>gb|AC080013.17| Homo sapiens 3 BAC RP11-379F4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163074

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 383    tgtgcaaagacagcctttgaag 404
              ||||||||||||||||||||||
Sbjct: 128356 tgtgcaaagacagcctttgaag 128335
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>gb|AC154472.2| Mus musculus BAC clone RP24-120L6 from chromosome 12, complete sequence
          Length = 155996

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 384   gtgcaaagacagcctttgaag 404
             |||||||||||||||||||||
Sbjct: 89370 gtgcaaagacagcctttgaag 89390
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>gb|AC154048.1| Drosophila melanogaster clone BACR29A04, complete sequence
          Length = 159930

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   ccgcagcagctgctccgccc 149
             ||||||||||||||||||||
Sbjct: 45079 ccgcagcagctgctccgccc 45098
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>gb|AC154042.1| Drosophila melanogaster clone BACR46E23, complete sequence
          Length = 181148

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   ccgcagcagctgctccgccc 149
             ||||||||||||||||||||
Sbjct: 12262 ccgcagcagctgctccgccc 12243
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>ref|XM_470049.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 326  acagagagagcgggatgagaagga 349
            ||||| ||||||||||||||||||
Sbjct: 1260 acagaaagagcgggatgagaagga 1283
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>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete
              sequence
          Length = 762694

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    tgacaaggaggagtacttgg 315
              ||||||||||||||||||||
Sbjct: 640996 tgacaaggaggagtacttgg 641015
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>gb|AC069469.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-75J13, complete
              sequence
          Length = 172786

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                              
Query: 52     ccccgttcctccgctccgcccgctcgctcgcc 83
              |||| ||||||||| |||||||||||||||||
Sbjct: 142149 cccccttcctccgc-ccgcccgctcgctcgcc 142119
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>gb|AC118069.8| Rattus norvegicus 9 BAC CH230-343O14 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 179244

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    aagacagcctttgaagcata 408
              ||||||||||||||||||||
Sbjct: 166078 aagacagcctttgaagcata 166097
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>gb|AC079216.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-353E8, complete
            sequence
          Length = 221748

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 52   ccccgttcctccgctccgcccgctcgctcgcc 83
            |||| ||||||||| |||||||||||||||||
Sbjct: 2952 cccccttcctccgc-ccgcccgctcgctcgcc 2922
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>gb|AC126057.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0026D16, complete sequence
          Length = 129166

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    cctccgctccgcccgctcgc 78
             ||||||||||||||||||||
Sbjct: 16173 cctccgctccgcccgctcgc 16192
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>ref|NM_015117.1| Homo sapiens zinc finger CCCH-type containing 3 (ZC3H3), mRNA
          Length = 3268

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gcctcctgtcccgcagcagc 139
           ||||||||||||||||||||
Sbjct: 318 gcctcctgtcccgcagcagc 337
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>emb|AL589733.20| Human DNA sequence from clone RP11-164L23 on chromosome 6 Contains the 5'
              end of a novel gene, the gene for HGC6.1.1 protein, the
              KNSL3 gene for kinesin-like 3, the gene for a novel protein
              and 5 CpG islands, complete sequence
          Length = 201088

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    caggagaggcaaggataggg 375
              ||||||||||||||||||||
Sbjct: 186017 caggagaggcaaggataggg 185998
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>emb|AL157699.13| Human DNA sequence from clone RP13-55H22 on chromosome Xq12-21.1
             Contains the PJA1 gene for praja 1, a high-mobility group
             nucleosome binding domain 1 (HMGN1) pseudogene, the 5' end
             of a novel gene and a CpG island, complete sequence
          Length = 119185

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 393   cagcctttgaagcatagggattat 416
             |||||||||||||| |||||||||
Sbjct: 37710 cagcctttgaagcaaagggattat 37733
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>emb|AL079341.19|HSDJ319M7 Human DNA sequence from clone RP1-319M7 on chromosome 6p21.1-21.3
             Contains the 5' end of the gene for a novel protein
             (contains KIAA1880 and FLJ32945), a TRK-fused gene (TFG)
             pseudogene and a CpG island, complete sequence
          Length = 128216

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 357   aggagaggcaaggataggggccct 380
             ||||||||||||||||||| ||||
Sbjct: 16120 aggagaggcaaggatagggcccct 16097
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>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
             complete sequence
          Length = 141715

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    ccgcccgctcgctcgcctct 86
             ||||||||||||||||||||
Sbjct: 12099 ccgcccgctcgctcgcctct 12118
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>gb|AC012180.6| Homo sapiens chromosome 16 clone RP11-31I10, complete sequence
          Length = 69437

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 46   cctccgccccgttcctccgctccgcccg 73
            ||||||||||||||| |||| |||||||
Sbjct: 3865 cctccgccccgttcccccgcgccgcccg 3838
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>gb|BC038670.1| Homo sapiens zinc finger CCCH-type containing 3, mRNA (cDNA clone
           MGC:43116 IMAGE:5260824), complete cds
          Length = 3268

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gcctcctgtcccgcagcagc 139
           ||||||||||||||||||||
Sbjct: 318 gcctcctgtcccgcagcagc 337
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>gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, complete sequence
          Length = 246033

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   ctcctgtgcaaagacagcct 398
             ||||||||||||||||||||
Sbjct: 80160 ctcctgtgcaaagacagcct 80141
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>emb|AL031718.11|HS371H6 Human DNA sequence from clone LA16-371H6 on chromosome 16 Contains
            part of the gene for KIAA0516 protein, part of a gene
            similar to NDP kinase, ESTs, an STS and 2 CpG Islands,
            complete sequence
          Length = 20612

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 46   cctccgccccgttcctccgctccgcccg 73
            ||||||||||||||| |||| |||||||
Sbjct: 1163 cctccgccccgttcccccgcgccgcccg 1136
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>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
             complete sequence
          Length = 166218

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    ccgcccgctcgctcgcctct 86
             ||||||||||||||||||||
Sbjct: 37940 ccgcccgctcgctcgcctct 37959
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>gb|AE006639.1| Homo sapiens 16p13.3 sequence section 7 of 8
          Length = 270150

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 46     cctccgccccgttcctccgctccgcccg 73
              ||||||||||||||| |||| |||||||
Sbjct: 158241 cctccgccccgttcccccgcgccgcccg 158214
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>gb|AC067930.7| Homo sapiens chromosome 8, clone RP11-661A12, complete sequence
          Length = 174906

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   gcctcctgtcccgcagcagc 139
             ||||||||||||||||||||
Sbjct: 77226 gcctcctgtcccgcagcagc 77207
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>gb|AC023946.5| Homo sapiens chromosome 11, clone RP11-567I13, complete sequence
          Length = 187380

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctttgaagcatagggattat 416
             ||||||||||||||||||||
Sbjct: 12339 ctttgaagcatagggattat 12358
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>ref|NM_167302.1| Drosophila melanogaster CG1841-RB, transcript variant B (CG1841),
           mRNA
          Length = 3261

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 130 ccgcagcagctgctccgccc 149
           ||||||||||||||||||||
Sbjct: 617 ccgcagcagctgctccgccc 598
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>dbj|D63484.1| Homo sapiens mRNA for KIAA0150 gene, partial cds
          Length = 3231

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gcctcctgtcccgcagcagc 139
           ||||||||||||||||||||
Sbjct: 295 gcctcctgtcccgcagcagc 314
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>ref|NM_132515.2| Drosophila melanogaster CG1841-RA, transcript variant A (CG1841),
           mRNA
          Length = 3012

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 130 ccgcagcagctgctccgccc 149
           ||||||||||||||||||||
Sbjct: 368 ccgcagcagctgctccgccc 349
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>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0039K08, complete sequence
          Length = 122163

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     cctccgctccgcccgctcgc 78
              ||||||||||||||||||||
Sbjct: 100683 cctccgctccgcccgctcgc 100702
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>gb|AY069304.1| Drosophila melanogaster HL07962 full length cDNA
          Length = 3023

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 130 ccgcagcagctgctccgccc 149
           ||||||||||||||||||||
Sbjct: 364 ccgcagcagctgctccgccc 345
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 59       cctccgctccgcccgctcgc 78
                ||||||||||||||||||||
Sbjct: 25788340 cctccgctccgcccgctcgc 25788359
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 21      ggccgccgccccgcccgacgccga 44
               ||||||| ||||||||||||||||
Sbjct: 7425809 ggccgcctccccgcccgacgccga 7425786
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 67       ccgcccgctcgctcgcctct 86
                ||||||||||||||||||||
Sbjct: 27005517 ccgcccgctcgctcgcctct 27005536
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>gb|AC104031.6| Homo sapiens chromosome 11, clone RP11-483L5, complete sequence
          Length = 212779

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    ctttgaagcatagggattat 416
              ||||||||||||||||||||
Sbjct: 123234 ctttgaagcatagggattat 123253
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>gb|AC092903.11| Homo sapiens 3 BAC RP11-666A20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161141

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    gaagccaggagaggcaagga 370
              ||||||||||||||||||||
Sbjct: 130994 gaagccaggagaggcaagga 131013
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>gb|AC103705.5| Homo sapiens chromosome 8, clone RP11-55J15, complete sequence
          Length = 194189

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    gaagccaggagaggcaagga 370
              ||||||||||||||||||||
Sbjct: 110944 gaagccaggagaggcaagga 110963
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>gb|AC135377.3| Mus musculus BAC clone RP24-66B2 from chromosome 19, complete sequence
          Length = 179745

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   cctgtccgctcgcctcctgt 128
             ||||||||||||||||||||
Sbjct: 55594 cctgtccgctcgcctcctgt 55613
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>dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0001B11
          Length = 166004

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     ggccgccgccccgcccgacgccga 44
              ||||||| ||||||||||||||||
Sbjct: 132394 ggccgcctccccgcccgacgccga 132371
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>dbj|AK103214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122M20, full
            insert sequence
          Length = 2080

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 326  acagagagagcgggatgagaagga 349
            ||||| ||||||||||||||||||
Sbjct: 1427 acagaaagagcgggatgagaagga 1450
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>gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 of 74 of the complete
             sequence
          Length = 308317

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   ccgcagcagctgctccgccc 149
             ||||||||||||||||||||
Sbjct: 15800 ccgcagcagctgctccgccc 15781
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 20      gggccgccgccccgcccgacgccg 43
               |||||||||||||| |||||||||
Sbjct: 2601407 gggccgccgccccggccgacgccg 2601430
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 59       cctccgctccgcccgctcgc 78
                ||||||||||||||||||||
Sbjct: 26107010 cctccgctccgcccgctcgc 26107029
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>gb|M15850.1|CHKVIM1 Chicken vimentin gene, exons 1 and 2
          Length = 2842

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 20  gggccgccgccccgcccgacgccg 43
           |||||||||||||||||| |||||
Sbjct: 726 gggccgccgccccgcccgccgccg 703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,953,150
Number of Sequences: 3902068
Number of extensions: 2953150
Number of successful extensions: 63459
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 63105
Number of HSP's gapped (non-prelim): 355
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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