ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KLF16_HUMAN (Q9BXK1) Krueppel-like factor 16 (Transcription fact... 33 0.28
2SCNAA_RABIT (O97741) Amiloride-sensitive sodium channel alpha-su... 32 0.63
3CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding p... 32 0.82
4SCNAA_MOUSE (Q61180) Amiloride-sensitive sodium channel alpha-su... 32 0.82
5SCNAA_RAT (P37089) Amiloride-sensitive sodium channel alpha-subu... 32 1.1
6SCNAA_HUMAN (P37088) Amiloride-sensitive sodium channel alpha-su... 32 1.1
7GP152_HUMAN (Q8TDT2) Probable G-protein coupled receptor 152 (G-... 31 1.8
8CT165_MOUSE (Q9DA57) Protein C20orf165 homolog 30 2.4
9SCNNA_BOVIN (P55270) Amiloride-sensitive sodium channel alpha-su... 30 2.4
10CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding... 30 2.4
11SOX14_DROME (P40656) Putative transcription factor SOX-14 30 2.4
12SOH1_ARATH (Q8VYB1) Probable mediator complex subunit SOH1 30 4.1
13GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor (H... 30 4.1
14ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phyt... 30 4.1
15CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding... 30 4.1
16PUM2_MOUSE (Q80U58) Pumilio homolog 2 30 4.1
17PUM2_HUMAN (Q8TB72) Pumilio homolog 2 (Pumilio-2) 30 4.1
18HXB4_MOUSE (P10284) Homeobox protein Hox-B4 (Hox-2.6) 30 4.1
19RUVA_RHIET (Q9L9C4) Holliday junction ATP-dependent DNA helicase... 30 4.1
20ENV_GALV (P21415) Env polyprotein precursor [Contains: Coat prot... 29 5.3
21SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich... 29 5.3
22IF2_STRAW (Q82K53) Translation initiation factor IF-2 29 5.3
23CS016_HUMAN (Q8ND99) Protein C19orf16 29 5.3
24DYHC_ANTCR (P39057) Dynein beta chain, ciliary 29 5.3
25CITE4_RAT (Q99MA0) Cbp/p300-interacting transactivator 4 (MSG1-r... 29 5.3
26ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi... 29 6.9
27IF2_PELLD (Q3B1Z8) Translation initiation factor IF-2 29 6.9
28MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1 29 6.9
29PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-s... 29 6.9
30POLR_ELV (P35928) RNA replicase polyprotein (EC 2.7.7.48) 29 6.9
31CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-ch... 28 9.1
32T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-relate... 28 9.1
33RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (N... 28 9.1
34GID_SILPO (Q5LST0) tRNA uridine 5-carboxymethylaminomethyl modif... 28 9.1
35ACS2L_MOUSE (Q99NB1) Acetyl-coenzyme A synthetase 2-like, mitoch... 28 9.1
36IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 s... 28 9.1

>KLF16_HUMAN (Q9BXK1) Krueppel-like factor 16 (Transcription factor BTEB4)|
           (Basic transcription element-binding protein 4)
           (BTE-binding protein 4) (Novel Sp1-like zinc finger
           transcription factor 2) (Transcription factor NSLP2)
          Length = 252

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 347 PPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQG 192
           PPAASG     + +        L D    PG  P   +P + ++AASSP+ G
Sbjct: 62  PPAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASPASSSSAASSPSSG 113



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>SCNAA_RABIT (O97741) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 640

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -2

Query: 377 WVPRRIRQGAPPAASGWRTPCSRSTSAFLPHPL-PDAESPPGTLP*SLAPRTEAAAASSP 201
           W P R   GA   AS   +P S   S F PHP  P    P  TLP SL     A A   P
Sbjct: 570 WSPGRGAGGAREVAS---SPVSALPSRFCPHPTSPSVPQPGPTLPPSLTAPPPAYATLGP 626



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>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -2

Query: 287 HPLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
           HP P A SPP T+P    P T   AAS+   GP
Sbjct: 277 HPGPSAGSPPLTVPAIPVPATSVTAASTQPLGP 309



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>SCNAA_MOUSE (Q61180) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 699

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 24/60 (40%), Positives = 26/60 (43%)
 Frame = -2

Query: 377 WVPRRIRQGAPPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPA 198
           W P R  +GA   AS   TP S   S F PHP     SPP +LP        A  A  PA
Sbjct: 620 WSPGRGARGAREVAS---TPASSFPSRFCPHP----TSPPPSLPQQGTTPPLALTAPPPA 672



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>SCNAA_RAT (P37089) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 698

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = -2

Query: 377 WVPRRIRQGAPPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP 246
           W P R  +GA   AS   TP S   S F PHP     SPP +LP
Sbjct: 620 WSPGRGARGAREVAS---TPASSFPSRFCPHP----TSPPPSLP 656



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>SCNAA_HUMAN (P37088) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 669

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 23/64 (35%), Positives = 28/64 (43%)
 Frame = -2

Query: 377 WVPRRIRQGAPPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPA 198
           W P R  +GA   AS   T  S   S F PHP+  + S PG  P   +P   A   +   
Sbjct: 593 WSPGRGGRGAQEVAS---TLASSPPSHFCPHPMSLSLSQPGPAP---SPALTAPPPAYAT 646

Query: 197 QGPR 186
            GPR
Sbjct: 647 LGPR 650



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>GP152_HUMAN (Q8TDT2) Probable G-protein coupled receptor 152 (G-protein coupled|
           receptor PGR5)
          Length = 470

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -2

Query: 356 QGAPPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
           Q   PAAS   +PC  ++     HP P A   P T P   A   E+ +++ P   P
Sbjct: 413 QTPAPAASSVPSPCDEASPTPSSHPTPGALEDPATPP---ASEGESPSSTPPEAAP 465



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>CT165_MOUSE (Q9DA57) Protein C20orf165 homolog|
          Length = 226

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = -2

Query: 347 PPAASGWRTPCSRSTSAFL-----PHPLPDAESPPGTLP*SLAPRTEAAAA 210
           P  + GW  PCSRS + +L     P PL      PG LP S     + AA+
Sbjct: 99  PLESLGWADPCSRSRAPYLGGPSRPRPLLLCGLSPGVLPISSEAGGKEAAS 149



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>SCNNA_BOVIN (P55270) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 650

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -2

Query: 377 WVPRRIRQGAPPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPA 198
           W P R  +G    AS   TP +   S+F PHP   + SPP     +++P   A   +   
Sbjct: 574 WSPGRGGKGTQEVAS---TPAASLPSSFCPHPAFFSSSPPDP---AISPALSAPPPAYAT 627

Query: 197 QGP 189
            GP
Sbjct: 628 LGP 630



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>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 287 HPLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
           HP P A SPP T+P    P T   A S+   GP
Sbjct: 277 HPGPSAGSPPLTVPAIPVPATSVTATSTQPLGP 309



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>SOX14_DROME (P40656) Putative transcription factor SOX-14|
          Length = 472

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 371 PRRIRQGAPPAASGWRTPCSRSTSAFLP-HPLPDAESPPGTL-P*SLAPRTEAAAASSPA 198
           P  +R G  P      TP   +T      HP P A+S P TL P S +P   ++ + +PA
Sbjct: 13  PLSLRPGTVPTVPA-TTPARPATITIQRRHPAPKADSTPHTLPPFSPSPSPASSPSPAPA 71

Query: 197 QGP 189
           Q P
Sbjct: 72  QTP 74



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>SOH1_ARATH (Q8VYB1) Probable mediator complex subunit SOH1|
          Length = 196

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -2

Query: 329 WRTPCSRSTSAFLPHPLPDA--ESPPGTLP*SLAPRTEAAAASSPAQGP 189
           W+   +      LP PLP+     PP     SL P   A AA SPA  P
Sbjct: 119 WKNYRNNRLKHILPRPLPEPVPPQPPVAPSTSLPPAPSATAALSPALSP 167



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>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -2

Query: 347 PPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
           PP+ +    P     S   P P P + +PP   P S AP + A  + +P   P
Sbjct: 70  PPSPAPPSPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPP 122



 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 284 PLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
           P P + SPP  +P S AP   + A  SPA  P
Sbjct: 303 PTPPSPSPPSPVPPSPAPVPPSPAPPSPAPSP 334



 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -2

Query: 350 APPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
           APP+      P     S   P P P + +PP   P S AP    A  S P+  P
Sbjct: 74  APPSPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAP-PSPAPPSPPSPAP 126



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>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like|
           protein)
          Length = 349

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 350 APPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSP 201
           +PPA     +P S S++     P P A     T+P S AP T    + +P
Sbjct: 216 SPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTIPPSSAPMTSPPGSMAP 265



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>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
           (GTP-binding and GTPase activating protein 2) (GGAP2)
          Length = 1192

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 287 HPLPDAESP-PGTLP*SLAPRTEAAAASSPAQGP 189
           HP P A SP P TLP + +P T   AAS+   GP
Sbjct: 282 HPGPPAGSPPPLTLPPTPSPATAVTAASAQPPGP 315



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>PUM2_MOUSE (Q80U58) Pumilio homolog 2|
          Length = 1066

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 302 SAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
           +AF+P+P   + +PPGT P + A    AA  + PA  P
Sbjct: 304 AAFVPNPYIISAAPPGTDPYTAAGLAAAATLAGPAVVP 341



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>PUM2_HUMAN (Q8TB72) Pumilio homolog 2 (Pumilio-2)|
          Length = 1066

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 302 SAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
           +AF+P+P   + +PPGT P + A    AA  + PA  P
Sbjct: 305 AAFVPNPYIISAAPPGTDPYTAAGLAAAATLAGPAVVP 342



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>HXB4_MOUSE (P10284) Homeobox protein Hox-B4 (Hox-2.6)|
          Length = 250

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
 Frame = -2

Query: 347 PPAASGWRTPCS--RSTSAFLPHPLPDAESPPGTLP*SLAPRT---EAAAASSPAQGPR 186
           P AA G R PC+  R  +   P P P    PP   P  L+PR      A A  P  G R
Sbjct: 50  PEAAFGRRAPCTVQRYAACRDPGPPPPPPPPPPPPPPGLSPRAPVQPTAGALLPEPGQR 108



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>RUVA_RHIET (Q9L9C4) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 206

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 341 AASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQGPRL 183
           +A  WR+PCSR  +A    P+P            +A +  AA + +P  GP++
Sbjct: 82  SAPRWRSPCSRPLNARPSSPMP------------IALQDRAAVSRAPGVGPKV 122



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>ENV_GALV (P21415) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 667

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 305 TSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
           TS  LP PLP  E+PP +LP S      + A ++ AQ P
Sbjct: 279 TSLALPPPLPPREAPPPSLPDS-----NSTALATSAQTP 312



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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
 Frame = -2

Query: 353 GAPPAASGWRTPCS----RSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQGPR 186
           GAPP +    TP       S     P P P +   P T P +  P    AA   P  GP+
Sbjct: 140 GAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPK 199



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>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = -2

Query: 359 RQGAPPAASGWRT---PCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
           R  A PAA G R    P  R   A      P+  +PP       AP   AAAAS P  G 
Sbjct: 100 RPAAAPAAPGPRPGPKPAPRPAPAAPAPAAPEFTAPPS------APAAPAAAASGPRPGA 153

Query: 188 R 186
           R
Sbjct: 154 R 154



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>CS016_HUMAN (Q8ND99) Protein C19orf16|
          Length = 567

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = -2

Query: 392 CKCQGWVPRRIRQGAPPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAA 213
           CK    V +  +  A PA+S W+ P   +     P   P A +PP   P   AP  +A A
Sbjct: 63  CKAPFLVDQSQKLPAVPASS-WKPPPGLAP----PQKAPAASAPPRKAPAVPAPSQKAPA 117

Query: 212 ASSPAQ 195
             +P+Q
Sbjct: 118 VPAPSQ 123



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>DYHC_ANTCR (P39057) Dynein beta chain, ciliary|
          Length = 4466

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +2

Query: 221  PLFSAPETTAESLAAIXXXXXXXXXXXXYYVNMGYAIRTLREELPDVFCEEPSLDIYRED 400
            PLF   E   ESL A+                 G  I +L +E  D+F  E S DI++  
Sbjct: 806  PLFERKELKKESLLALDDRQDRLKKRYAEITTAGEKIHSLMKENLDLFKAEASSDIWKAY 865

Query: 401  IVFKDPL 421
            + + D +
Sbjct: 866  VDYVDDM 872



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>CITE4_RAT (Q99MA0) Cbp/p300-interacting transactivator 4 (MSG1-related|
           protein 2) (MRG-2)
          Length = 179

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 359 RQGAPPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SL 237
           R  APP+A+G  +P   +  A  P PLP    PP  LP +L
Sbjct: 88  RMPAPPSAAGGPSPLQPAPGAASPLPLP----PPPPLPPAL 124



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>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)|
           (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1)
           (ArgBP1)
          Length = 513

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -2

Query: 350 APPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQG 192
           AP  ++G  TP   +TSA  P PL      P T+P S AP   A  A + A G
Sbjct: 284 APAGSAG--TPPLPATSASAPAPL-----VPATVPSSTAPNAAAGGAPNLADG 329



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>IF2_PELLD (Q3B1Z8) Translation initiation factor IF-2|
          Length = 915

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 347 PPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
           P  A     P  R+ +   P P+   E+P    P + AP TE+A A +PA  P
Sbjct: 100 PSPAPPVHEPPVRAAAQPAPVPVAAGEAPSPLAPETPAPATESAPAVAPAGVP 152



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>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 27/67 (40%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = -2

Query: 371  PRRIRQG-----APPAA-SGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAA 210
            PRR ++G      PPA  SG R   S S    LP P  D ESP   LP       E   A
Sbjct: 990  PRRQQRGDLNCKMPPAEKSGVRAAFSPS----LPSPHGDQESPEACLP------PEPPEA 1039

Query: 209  SSPAQGP 189
            S+P Q P
Sbjct: 1040 SAPLQNP 1046



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>PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2333

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 199  AGEEAAAASVLGARDYGRVPGGDSASGR 282
            +G+E    S  GA D+GR+P G   SG+
Sbjct: 1373 SGKEDLIGSASGALDFGRIPSGTLGSGQ 1400



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>POLR_ELV (P35928) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1748

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -2

Query: 320 PCSRSTSAFLPHPLPDAESPPG-----TLP*SLAPRTEAAAASSPAQGP 189
           P S S +A  PHPLP A+ PP        P  LA  ++  AA    Q P
Sbjct: 569 PASPSIAA-APHPLPPAQKPPRPPTTVPTPKPLASPSQTQAAQPATQSP 616



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>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel [Contains:|
            Glutamic acid-rich protein (GARP);
            Cyclic-nucleotide-gated cation channel 4 (CNG channel 4)
            (CNG-4) (Cyclic nucleotide-gated cation channel
            modulatory subunit)]
          Length = 1394

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 284  PLPDAESPPGTLP*SLAPRTEAAAASSPAQGP 189
            P P+A +P  T P  LAP   A  A +P+  P
Sbjct: 1293 PAPEAPAPEPTAPEPLAPEAPAPEAPAPSSPP 1324



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>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible|
           leucine zipper protein 4)
          Length = 780

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 317 CSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQG 192
           C RS+S    + + DAE+P    P  L     AAAA++PA G
Sbjct: 63  CERSSSEETLNNVGDAETPGTVSPNLLLDGQLAAAAAAPANG 104



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>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)|
          Length = 1162

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
 Frame = -2

Query: 371 PRRIRQGAPPAA-----SGWRTPCSRSTS-----AFLPHPLPDAESPPG--TLP*SLAPR 228
           PR     APP A     S  R+P + + S     A LP  LP+ + PP     P   +P 
Sbjct: 88  PRGPLPAAPPTAPERQPSWERSPAASAPSLPPAAAVLPSKLPEDDEPPARPPAPAGASPL 147

Query: 227 TEAAAASSPAQGPR 186
            E AA  S    P+
Sbjct: 148 AEPAAPPSTPAAPK 161



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>GID_SILPO (Q5LST0) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 449

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 18  WASLSRPLTSPALGARPPASCGATA 92
           W   + PLTSPALGA   A  GA A
Sbjct: 132 WIFATGPLTSPALGAAIQAETGAEA 156



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>ACS2L_MOUSE (Q99NB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial|
           precursor (EC 6.2.1.1) (Acetate--CoA ligase 2)
           (Acetyl-CoA synthetase 2) (AceCS2) (Acyl-CoA synthetase
           short-chain family member 1)
          Length = 682

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -2

Query: 335 SGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPA 198
           SGW    SRST+  LP  +P A + PG+      P   A AA  PA
Sbjct: 24  SGWSLSVSRSTATRLPGCVP-AAAQPGSY-----PALSAQAAQEPA 63



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>IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 357

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -2

Query: 344 PAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLA-PRTEAAAASSPAQGP 189
           P A+    P +   S   P P P A   P   P S + P   AAA ++P Q P
Sbjct: 11  PPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPGQTP 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,112,388
Number of Sequences: 219361
Number of extensions: 986335
Number of successful extensions: 4679
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 4185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4617
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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