ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast62e04 |
|---|---|
| Clone Library Name | barley_pub |
>tpg|BK004857.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 2 (GRF2) gene, complete cds Length = 3060 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 218 tgcccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 2127 tgcctgttcacggcgacgcagtggcaggagctcgagcaccaggcgctcatctacaagtac 2068 Query: 278 atggcctccggcg 290 |||||| |||||| Sbjct: 2067 atggccgccggcg 2055
>tpg|BK004856.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 1 (GRF1) gene, complete cds Length = 4000 Score = 121 bits (61), Expect = 2e-24 Identities = 67/69 (97%) Strand = Plus / Plus Query: 220 cccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtacat 279 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1759 cccgttcacggcgtcgcagtggcaggagctggagcaccaggcgctcatctacaagtacat 1818 Query: 280 ggcctccgg 288 ||| ||||| Sbjct: 1819 ggcgtccgg 1827
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Plus Query: 218 tgcccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 5311034 tgcctgttcacggcgacgcagtggcaggagctcgagcaccaggcgctcatctacaagtac 5311093 Query: 278 atggcctccggcg 290 |||||| |||||| Sbjct: 5311094 atggccgccggcg 5311106 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 224 ttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 ||||||||| |||||||| |||||||||||| ||||||||||| ||||||||| Sbjct: 895079 ttcacggcggcgcagtgggcggagctggagcagcaggcgctcatttacaagtac 895026
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 121 bits (61), Expect = 2e-24 Identities = 67/69 (97%) Strand = Plus / Minus Query: 220 cccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtacat 279 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32860707 cccgttcacggcgtcgcagtggcaggagctggagcaccaggcgctcatctacaagtacat 32860648 Query: 280 ggcctccgg 288 ||| ||||| Sbjct: 32860647 ggcgtccgg 32860639 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 221 ccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 |||||||| ||| |||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 28885117 ccgttcaccgcggcgcagtacgaggagctggagcagcaggcgctcatatacaagtac 28885061 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 241 gcaggagctggagcaccaggcgctcatctac 271 |||||||||||||||||||| |||||||||| Sbjct: 27746790 gcaggagctggagcaccaggtgctcatctac 27746820
>dbj|AP005538.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0013K01 Length = 139464 Score = 121 bits (61), Expect = 2e-24 Identities = 67/69 (97%) Strand = Plus / Minus Query: 220 cccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtacat 279 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118725 cccgttcacggcgtcgcagtggcaggagctggagcaccaggcgctcatctacaagtacat 118666 Query: 280 ggcctccgg 288 ||| ||||| Sbjct: 118665 ggcgtccgg 118657
>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1534_E09 Length = 126209 Score = 121 bits (61), Expect = 2e-24 Identities = 67/69 (97%) Strand = Plus / Minus Query: 220 cccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtacat 279 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15448 cccgttcacggcgtcgcagtggcaggagctggagcaccaggcgctcatctacaagtacat 15389 Query: 280 ggcctccgg 288 ||| ||||| Sbjct: 15388 ggcgtccgg 15380
>dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0015B15 Length = 123083 Score = 121 bits (61), Expect = 2e-24 Identities = 70/73 (95%) Strand = Plus / Plus Query: 218 tgcccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 52546 tgcctgttcacggcgacgcagtggcaggagctcgagcaccaggcgctcatctacaagtac 52605 Query: 278 atggcctccggcg 290 |||||| |||||| Sbjct: 52606 atggccgccggcg 52618
>gb|AF201895.1|AF201895 Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds Length = 1891 Score = 121 bits (61), Expect = 2e-24 Identities = 67/69 (97%) Strand = Plus / Plus Query: 220 cccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtacat 279 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 cccgttcacggcgtcgcagtggcaggagctggagcaccaggcgctcatctacaagtacat 302 Query: 280 ggcctccgg 288 ||| ||||| Sbjct: 303 ggcgtccgg 311 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 390 cactgggctggggttgcttcgggatggggttcggccggaag 430 ||||||| ||||||||||| || |||||||| || |||||| Sbjct: 413 cactggggtggggttgctttggcatggggtttgggcggaag 453
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase, aminoalcoholphosphotransferase, putative growth-regulating factor 1, putative GAG-POL precursor, putative GAG-POL precursor, putative RIRE2 orf3, putative anthocyanin regulatory C1, putative protein T30F21.6, putative copia polyprotein, putative copia polyprotein, putative protein NP_196765.1, and gb protein genes, complete cds; and putative zinc finger protein gene, partial cds Length = 144159 Score = 111 bits (56), Expect = 2e-21 Identities = 65/68 (95%) Strand = Plus / Plus Query: 223 gttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtacatggc 282 |||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 37301 gttcacggcgtcgcagtggcaggagcttgagcaccaggcgctcatcttcaagtacatggc 37360 Query: 283 ctccggcg 290 |||||||| Sbjct: 37361 ctccggcg 37368
>gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S ribosomal protein S8 (Z214A02.25), and putative casein kinase I (Z214A02.27) genes, complete cds Length = 158797 Score = 111 bits (56), Expect = 2e-21 Identities = 65/68 (95%) Strand = Plus / Minus Query: 223 gttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtacatggc 282 |||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct: 57291 gttcacggcgtcgcagtggcaggagctggagcaccaggcgctcatcttcaaatacatggc 57232 Query: 283 ctccggcg 290 |||||||| Sbjct: 57231 ctccggcg 57224
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds Length = 155173 Score = 103 bits (52), Expect = 5e-19 Identities = 64/68 (94%) Strand = Plus / Minus Query: 223 gttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtacatggc 282 |||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 52127 gttcacggcgtcgcagtggcaggagctcgagcaccaggcgctcatcttcaagtacatggc 52068 Query: 283 ctccggcg 290 ||| |||| Sbjct: 52067 ctcgggcg 52060
>ref|XM_550515.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1612 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 224 ttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 ||||||||| |||||||| |||||||||||| ||||||||||| ||||||||| Sbjct: 280 ttcacggcggcgcagtgggcggagctggagcagcaggcgctcatttacaagtac 333
>tpg|BK004860.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 5 (GRF5) gene, complete cds Length = 5520 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 224 ttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 ||||||||| |||||||| |||||||||||| ||||||||||| ||||||||| Sbjct: 1680 ttcacggcggcgcagtgggcggagctggagcagcaggcgctcatttacaagtac 1733
>emb|AJ315900.1|OSA315900 Oryza sativa DNA, clone F10 (C3) Length = 11495 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 224 ttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 ||||||||| |||||||| |||||||||||| ||||||||||| ||||||||| Sbjct: 1395 ttcacggcggcgcagtgggcggagctggagcagcaggcgctcatttacaagtac 1342
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 224 ttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 ||||||||| |||||||| |||||||||||| ||||||||||| ||||||||| Sbjct: 75974 ttcacggcggcgcagtgggcggagctggagcagcaggcgctcatttacaagtac 75921
>dbj|AK103508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131E19, full insert sequence Length = 1612 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 224 ttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 ||||||||| |||||||| |||||||||||| ||||||||||| ||||||||| Sbjct: 280 ttcacggcggcgcagtgggcggagctggagcagcaggcgctcatttacaagtac 333
>ref|XM_473762.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 224 ttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 ||||||||| |||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 160 ttcacggcggcgcagtacgaggagctggagcagcaggcgctcatatacaagtac 213
>tpg|BK004858.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 3 (GRF3) gene, complete cds Length = 6530 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 224 ttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 ||||||||| |||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 4716 ttcacggcggcgcagtacgaggagctggagcagcaggcgctcatatacaagtac 4663
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 224 ttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 ||||||||| |||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 30355320 ttcacggcggcgcagtacgaggagctggagcagcaggcgctcatatacaagtac 30355267 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 235 gcagtggcaggagctggagcaccaggcgctcatctac 271 |||| |||||||||||||||| |||| |||||||||| Sbjct: 28895731 gcagcggcaggagctggagcagcaggtgctcatctac 28895767
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 224 ttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 ||||||||| |||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 105216 ttcacggcggcgcagtacgaggagctggagcagcaggcgctcatatacaagtac 105163
>ref|XM_467326.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1523 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 221 ccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 |||||||| ||| |||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 277 ccgttcaccgcggcgcagtacgaggagctggagcagcaggcgctcatatacaagtac 333
>tpg|BK004859.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 4 (GRF4) gene, complete cds Length = 5890 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 221 ccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 |||||||| ||| |||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 1876 ccgttcaccgcggcgcagtacgaggagctggagcagcaggcgctcatatacaagtac 1932
>dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1111_E07 Length = 123613 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 221 ccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 |||||||| ||| |||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 77809 ccgttcaccgcggcgcagtacgaggagctggagcagcaggcgctcatatacaagtac 77753
>dbj|AK063983.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D07, full insert sequence Length = 1523 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 221 ccgttcacggcgacgcagtggcaggagctggagcaccaggcgctcatctacaagtac 277 |||||||| ||| |||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 277 ccgttcaccgcggcgcagtacgaggagctggagcagcaggcgctcatatacaagtac 333
>tpg|BK004879.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 10 (GRF10) gene, complete cds Length = 4980 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 241 gcaggagctggagcaccaggcgctcatctac 271 |||||||||||||||||||| |||||||||| Sbjct: 3523 gcaggagctggagcaccaggtgctcatctac 3493
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0663F07 Length = 159046 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 241 gcaggagctggagcaccaggcgctcatctac 271 |||||||||||||||||||| |||||||||| Sbjct: 32123 gcaggagctggagcaccaggtgctcatctac 32153
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 241 gcaggagctggagcaccaggcgctcatctac 271 |||||||||||||||||||| |||||||||| Sbjct: 132656 gcaggagctggagcaccaggtgctcatctac 132686
>dbj|AK108170.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-H11, full insert sequence Length = 894 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 241 gcaggagctggagcaccaggcgctcatctac 271 |||||||||||||||||||| |||||||||| Sbjct: 338 gcaggagctggagcaccaggtgctcatctac 368
>ref|XM_469610.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1812 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 245 gagctggagcaccaggcgctcatctacaagtacatggc 282 |||||||||||||||||||| || ||||||||| |||| Sbjct: 496 gagctggagcaccaggcgctgatatacaagtacttggc 533
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 245 gagctggagcaccaggcgctcatctacaagtacatggc 282 |||||||||||||||||||| || ||||||||| |||| Sbjct: 29531276 gagctggagcaccaggcgctgatatacaagtacttggc 29531313 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagta 276 |||||||||||||||||| ||||| |||||||| Sbjct: 26388828 ggagctggagcaccaggctctcatttacaagta 26388860
>tpg|BK004861.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 6 (GRF6) gene, complete cds Length = 6870 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 245 gagctggagcaccaggcgctcatctacaagtacatggc 282 |||||||||||||||||||| || ||||||||| |||| Sbjct: 2906 gagctggagcaccaggcgctgatatacaagtacttggc 2943
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 245 gagctggagcaccaggcgctcatctacaagtacatggc 282 |||||||||||||||||||| || ||||||||| |||| Sbjct: 29622698 gagctggagcaccaggcgctgatatacaagtacttggc 29622735 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagta 276 |||||||||||||||||| ||||| |||||||| Sbjct: 26480137 ggagctggagcaccaggctctcatttacaagta 26480169
>gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 genomic sequence, complete sequence Length = 132782 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 245 gagctggagcaccaggcgctcatctacaagtacatggc 282 |||||||||||||||||||| || ||||||||| |||| Sbjct: 53906 gagctggagcaccaggcgctgatatacaagtacttggc 53943
>dbj|AK073578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048N01, full insert sequence Length = 1810 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 245 gagctggagcaccaggcgctcatctacaagtacatggc 282 |||||||||||||||||||| || ||||||||| |||| Sbjct: 139 gagctggagcaccaggcgctgatatacaagtacttggc 176
>gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete sequence Length = 129655 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagta 276 |||||||||||||||||| ||||| |||||||| Sbjct: 36868 ggagctggagcaccaggctctcatttacaagta 36900
>ref|XM_469253.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1556 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagta 276 |||||||||||||||||| ||||| |||||||| Sbjct: 468 ggagctggagcaccaggctctcatttacaagta 500
>ref|XM_473584.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 615 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 235 gcagtggcaggagctggagcaccaggcgctcatctac 271 |||| |||||||||||||||| |||| |||||||||| Sbjct: 138 gcagcggcaggagctggagcagcaggtgctcatctac 174
>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence Length = 134728 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 244 ggagctggagcaccaggcgctcatctacaagta 276 |||||||||||||||||| ||||| |||||||| Sbjct: 1812 ggagctggagcaccaggctctcatttacaagta 1780
>tpg|BK004878.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 9 (GRF9) gene, complete cds Length = 5610 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagta 276 |||||||||||||||||| ||||| |||||||| Sbjct: 2368 ggagctggagcaccaggctctcatttacaagta 2400
>tpg|BK004881.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 12 (GRF12) gene, complete cds Length = 5220 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 235 gcagtggcaggagctggagcaccaggcgctcatctac 271 |||| |||||||||||||||| |||| |||||||||| Sbjct: 1572 gcagcggcaggagctggagcagcaggtgctcatctac 1608
>dbj|AK110934.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-G02, full insert sequence Length = 1559 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 235 gcagtggcaggagctggagcaccaggcgctcatctac 271 |||| |||||||||||||||| |||| |||||||||| Sbjct: 564 gcagcggcaggagctggagcagcaggtgctcatctac 600
>dbj|AK058659.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F11, full insert sequence Length = 1616 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagta 276 |||||||||||||||||| ||||| |||||||| Sbjct: 468 ggagctggagcaccaggctctcatttacaagta 500
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 235 gcagtggcaggagctggagcaccaggcgctcatctac 271 |||| |||||||||||||||| |||| |||||||||| Sbjct: 107893 gcagcggcaggagctggagcagcaggtgctcatctac 107929
>gb|AC150698.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0072P10, complete sequence Length = 147540 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagtacat 279 |||||||||||||||||| || ||||||||| |||| Sbjct: 48058 ggagctggagcaccaggcactgatctacaagcacat 48093
>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041I05, complete sequence Length = 148785 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagtacat 279 |||||||||||||||||| || ||||||||| |||| Sbjct: 97974 ggagctggagcaccaggcactgatctacaagcacat 98009
>tpg|BK004863.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 8 (GRF8) gene, complete cds Length = 6000 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagtacat 279 |||||||||||||||||| || ||||||||| |||| Sbjct: 2238 ggagctggagcaccaggcactgatctacaagcacat 2273
>tpg|BK004862.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 7 (GRF7) gene, complete cds Length = 6670 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 244 ggagctggagcaccaggcgctcatctacaagtacat 279 |||||||||||||||||| || ||||||||| |||| Sbjct: 4778 ggagctggagcaccaggctctgatctacaagcacat 4743
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagtacat 279 |||||||||||||||||| || ||||||||| |||| Sbjct: 17957668 ggagctggagcaccaggctctgatctacaagcacat 17957703
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagtacat 279 |||||||||||||||||| || ||||||||| |||| Sbjct: 19692479 ggagctggagcaccaggcactgatctacaagcacat 19692514 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 228 cggcgacgcagtggcaggagctggagca 255 ||||| ||||||||||||||| |||||| Sbjct: 10741684 cggcggcgcagtggcaggagcaggagca 10741657
>dbj|AK103055.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117J15, full insert sequence Length = 2160 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagtacat 279 |||||||||||||||||| || ||||||||| |||| Sbjct: 394 ggagctggagcaccaggcactgatctacaagcacat 429
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagtacat 279 |||||||||||||||||| || ||||||||| |||| Sbjct: 19978336 ggagctggagcaccaggcactgatctacaagcacat 19978371 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 228 cggcgacgcagtggcaggagctggagca 255 ||||| ||||||||||||||| |||||| Sbjct: 10820873 cggcggcgcagtggcaggagcaggagca 10820846
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 244 ggagctggagcaccaggcgctcatctacaagtacat 279 |||||||||||||||||| || ||||||||| |||| Sbjct: 17883987 ggagctggagcaccaggctctgatctacaagcacat 17884022
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147543 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 244 ggagctggagcaccaggcgctcatctacaagtacat 279 |||||||||||||||||| || ||||||||| |||| Sbjct: 40888 ggagctggagcaccaggctctgatctacaagcacat 40853
>gb|AY111567.1| Zea mays CL53605_1 mRNA sequence Length = 661 Score = 46.1 bits (23), Expect = 0.094 Identities = 38/43 (88%) Strand = Plus / Plus Query: 234 cgcagtggcaggagctggagcaccaggcgctcatctacaagta 276 |||||||| |||||||||||||||||| || || |||||||| Sbjct: 402 cgcagtggatggagctggagcaccaggctctgatatacaagta 444
>ref|NM_121803.1| Arabidopsis thaliana unknown protein AT5G17980 mRNA, complete cds Length = 3150 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 tcaacccaccgcaccacgtcga 70 |||||||||||||||||||||| Sbjct: 2591 tcaacccaccgcaccacgtcga 2570
>dbj|AB015473.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCM23 Length = 36495 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 tcaacccaccgcaccacgtcga 70 |||||||||||||||||||||| Sbjct: 16187 tcaacccaccgcaccacgtcga 16166
>gb|M96073.1|ATHPHOTRAN Arabidopsis thaliana phosphoribosylanthranilate transferase (PAT1) gene, complete cds Length = 4143 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 tcaacccaccgcaccacgtcga 70 |||||||||||||||||||||| Sbjct: 23 tcaacccaccgcaccacgtcga 2
>gb|AC154901.1| Prunus persica (peach) BAC clone 82I18, complete sequence Length = 73299 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 tccactcaccacctctctccc 27 ||||||||||||||||||||| Sbjct: 26969 tccactcaccacctctctccc 26989
>gb|AC127567.4| Mus musculus BAC clone RP24-191P12 from chromosome 6, complete sequence Length = 185620 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 tccactcaccacctctctccc 27 ||||||||||||||||||||| Sbjct: 28648 tccactcaccacctctctccc 28668
>gb|AC019240.7|AC019240 Homo sapiens chromosome 18, clone RP11-510D19, complete sequence Length = 175032 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 cgtagctagctagctaggttgctgt 124 ||||||||||| ||||||||||||| Sbjct: 41422 cgtagctagcttgctaggttgctgt 41398
>gb|AC140110.2| Mus musculus BAC clone RP23-29H6 from 6, complete sequence Length = 214089 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tccactcaccacctctctccc 27 ||||||||||||||||||||| Sbjct: 9445 tccactcaccacctctctccc 9425
>gb|AC092266.4| Homo sapiens chromosome 5 clone RP11-24P24, complete sequence Length = 171601 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 4 ccctccactcaccacctctctcccctcac 32 |||||| ||||||||||| |||||||||| Sbjct: 117357 ccctcccctcaccacctccctcccctcac 117329 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 4 ccctccactcaccacctctctcccctcac 32 |||||| ||||||||||| |||||||||| Sbjct: 117238 ccctcccctcaccacctccctcccctcac 117210 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 5 cctccactcaccacctctctcccctcac 32 ||||| ||||||||||| |||||||||| Sbjct: 117373 cctcccctcaccacctccctcccctcac 117346 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 5 cctccactcaccacctctctcccctcac 32 ||||| ||||||||||| |||||||||| Sbjct: 117254 cctcctctcaccacctccctcccctcac 117227
>gb|AF109719.2|MMHC188A7 Mus musculus casein kinase 2 beta subunit (gMCK2) gene, partial cds; BAT4, NG20 (NG20), BAT3, BAT2, AIF-1, B144, lymphotoxin beta, TNF, and TNF beta genes, complete cds; IKBL gene, partial cds; and unknown gene Length = 120990 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 gcagtggcaggagctggagc 254 |||||||||||||||||||| Sbjct: 31595 gcagtggcaggagctggagc 31576
>gb|AC136501.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0044M15, complete sequence Length = 144568 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 228 cggcgacgcagtggcaggagctggagca 255 ||||| ||||||||||||||| |||||| Sbjct: 75918 cggcggcgcagtggcaggagcaggagca 75945
>gb|AC140182.2| Mus musculus BAC clone RP24-349I16 from chromosome 8, complete sequence Length = 151221 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 gtagctagctagctaggttg 120 |||||||||||||||||||| Sbjct: 146223 gtagctagctagctaggttg 146242
>gb|AC123826.4| Mus musculus BAC clone RP24-97K3 from chromosome 8, complete sequence Length = 188704 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 gtagctagctagctaggttg 120 |||||||||||||||||||| Sbjct: 89419 gtagctagctagctaggttg 89438
>gb|BC026647.1| Mus musculus HLA-B-associated transcript 3, mRNA (cDNA clone IMAGE:4987605), partial cds Length = 2630 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 gcagtggcaggagctggagc 254 |||||||||||||||||||| Sbjct: 829 gcagtggcaggagctggagc 810
>emb|AL445186.4| Human DNA sequence from clone RP11-336P12 on chromosome 9 Contains the 3' end of the PBX3 gene for pre-B-cell leukemia transcription factor 3, complete sequence Length = 156124 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ccaaggtccgtgcctcacaa 93 |||||||||||||||||||| Sbjct: 85472 ccaaggtccgtgcctcacaa 85453
>emb|AL606965.20| Mouse DNA sequence from clone RP23-313I15 on chromosome 13 Contains a peptidylprolyl isomerase D (cyclophilin D) (Ppid) pseudogene and a sperm specific lactate dehydrogenase 3C (Ldh3) pseudogene, complete sequence Length = 190594 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ctagctagctaggttgctgt 124 |||||||||||||||||||| Sbjct: 177471 ctagctagctaggttgctgt 177452
>gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, complete sequence Length = 155221 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ctcaccacctctctcccctc 30 |||||||||||||||||||| Sbjct: 43522 ctcaccacctctctcccctc 43541
>gb|AC023686.4| Drosophila melanogaster X BAC RP98-30C1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170626 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tagctagctagctaggttgc 121 |||||||||||||||||||| Sbjct: 42089 tagctagctagctaggttgc 42070
>dbj|AK148796.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120447D04 product:HLA-B-associated transcript 3, full insert sequence Length = 3707 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 gcagtggcaggagctggagc 254 |||||||||||||||||||| Sbjct: 1954 gcagtggcaggagctggagc 1935
>dbj|AK164266.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030051D22 product:HLA-B-associated transcript 3, full insert sequence Length = 3539 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 gcagtggcaggagctggagc 254 |||||||||||||||||||| Sbjct: 1916 gcagtggcaggagctggagc 1897
>dbj|AK170134.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630021C15 product:HLA-B-associated transcript 3, full insert sequence Length = 3450 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 gcagtggcaggagctggagc 254 |||||||||||||||||||| Sbjct: 2013 gcagtggcaggagctggagc 1994
>emb|AL116718.1|CNS01DEE Botrytis cinerea strain T4 cDNA library Length = 1020 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 cctccactcaccacctctctcccc 28 ||||||||||||||||||| |||| Sbjct: 915 cctccactcaccacctctcccccc 938
>gb|AC157493.3| Mus musculus BAC clone RP23-321K7 from chromosome 13, complete sequence Length = 184868 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctagctagctaggttgctgt 124 |||||||||||||||||||| Sbjct: 77382 ctagctagctaggttgctgt 77401
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ggagcaccaggcgctcatct 269 |||||||||||||||||||| Sbjct: 1914363 ggagcaccaggcgctcatct 1914382
>gb|AC023701.4| Drosophila melanogaster X BAC RP98-29B16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 198245 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tagctagctagctaggttgc 121 |||||||||||||||||||| Sbjct: 83920 tagctagctagctaggttgc 83939
>gb|AE003432.5| Drosophila melanogaster chromosome X, section 16 of 74 of the complete sequence Length = 319328 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tagctagctagctaggttgc 121 |||||||||||||||||||| Sbjct: 277677 tagctagctagctaggttgc 277658
>ref|NM_057171.1| Mus musculus HLA-B-associated transcript 3 (Bat3), mRNA Length = 3708 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 gcagtggcaggagctggagc 254 |||||||||||||||||||| Sbjct: 2024 gcagtggcaggagctggagc 2005
>emb|CR974444.18| Mouse DNA sequence from clone RP23-115O3 on chromosome 17, complete sequence Length = 190041 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 gcagtggcaggagctggagc 254 |||||||||||||||||||| Sbjct: 79439 gcagtggcaggagctggagc 79420
>emb|AL645625.15| Mouse DNA sequence from clone RP23-183L1 on chromosome 4, complete sequence Length = 226754 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ccctccactcaccacctctc 23 |||||||||||||||||||| Sbjct: 136186 ccctccactcaccacctctc 136205 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,211,288 Number of Sequences: 3902068 Number of extensions: 2211288 Number of successful extensions: 58990 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58132 Number of HSP's gapped (non-prelim): 858 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
