ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 258 1e-65
2dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic D... 258 1e-65
3dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 258 1e-65
4gb|BT008999.1| Triticum aestivum clone wdk2c.pk015.a13:fis, full... 198 1e-47
5gb|AY105043.1| Zea mays PCO069007 mRNA sequence 145 1e-31
6gb|AC117679.8| Mus musculus chromosome 9, clone RP23-435I22, com... 46 0.094
7emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 46 0.094
8dbj|AK007226.1| Mus musculus adult male testis cDNA, RIKEN full-... 46 0.094
9ref|XM_368927.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 42 1.5
10gb|CP000088.1| Thermobifida fusca YX, complete genome 42 1.5
11gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 42 1.5
12ref|NM_179843.1| Arabidopsis thaliana acetolactate synthase/ ami... 40 5.8
13ref|NM_179841.1| Arabidopsis thaliana acetolactate synthase/ ami... 40 5.8
14ref|NM_179842.1| Arabidopsis thaliana acetolactate synthase/ ami... 40 5.8
15ref|XM_466521.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
16gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.8
17gb|AY658135.1| Synthetic construct Peudomonas aeruginosa clone F... 40 5.8
18gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
19gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 5.8
20ref|XM_883491.1| Leishmania major strain Friedlin hypothetical p... 40 5.8
21emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4,... 40 5.8
22emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 40 5.8
23emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 40 5.8
24gb|AY103307.1| Arabidopsis thaliana At2g31810/F20M17.15 mRNA, co... 40 5.8
25gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 5.8
26gb|AC006533.8| Arabidopsis thaliana chromosome 2 clone F20M17 ma... 40 5.8
27ref|XM_684411.1| PREDICTED: Danio rerio abnormal spindles (aspm)... 40 5.8
28gb|AY058881.1| Arabidopsis thaliana At2g31810/F20M17.15 mRNA, co... 40 5.8
29gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.8
30dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
33dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.8
34gb|AE004703.1| Pseudomonas aeruginosa PAO1, section 264 of 529 o... 40 5.8
35dbj|AP005448.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
36dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
37dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
38dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
39emb|CR388178.5| Zebrafish DNA sequence from clone DKEY-114D20 in... 40 5.8 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  258 bits (130), Expect = 1e-65
 Identities = 195/217 (89%)
 Strand = Plus / Plus

                                                                            
Query: 215      gggattgcagggtgcggcgccacacgatttctgtgttcgtcggggacgagagcggcatga 274
                |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 23905543 gggaatgcagggtgcggcgccacacgatctctgtgttcgtcggcgacgagagcgggatga 23905602

                                                                            
Query: 275      taaacaggattgccggggtcttcgcaaggagaggctacaacatcgagtccctcgccgtgg 334
                ||||| |||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||
Sbjct: 23905603 taaaccggatcgccggggtgttcgccaggagagggtacaacatcgagtcgctcgccgtgg 23905662

                                                                            
Query: 335      ggctcaacaaggataaggccctcttcaccatcgtcgtctcggggacggacagggtgctca 394
                ||||||||||||| |||||| | |||||||| |||||||| || ||||||||||||||||
Sbjct: 23905663 ggctcaacaaggacaaggccatgttcaccattgtcgtctccggcacggacagggtgctca 23905722

                                                     
Query: 395      agncagtcattgagcagctcaataagctggtcaacgt 431
                |   |||||| ||||||||||| ||||| ||||||||
Sbjct: 23905723 accaagtcatcgagcagctcaacaagcttgtcaacgt 23905759



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 113      tccgccccttgcgccgccgc 132
                ||||||||||||||||||||
Sbjct: 23117563 tccgccccttgcgccgccgc 23117544
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>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0030C08
          Length = 163423

 Score =  258 bits (130), Expect = 1e-65
 Identities = 195/217 (89%)
 Strand = Plus / Plus

                                                                          
Query: 215    gggattgcagggtgcggcgccacacgatttctgtgttcgtcggggacgagagcggcatga 274
              |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 127209 gggaatgcagggtgcggcgccacacgatctctgtgttcgtcggcgacgagagcgggatga 127268

                                                                          
Query: 275    taaacaggattgccggggtcttcgcaaggagaggctacaacatcgagtccctcgccgtgg 334
              ||||| |||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||
Sbjct: 127269 taaaccggatcgccggggtgttcgccaggagagggtacaacatcgagtcgctcgccgtgg 127328

                                                                          
Query: 335    ggctcaacaaggataaggccctcttcaccatcgtcgtctcggggacggacagggtgctca 394
              ||||||||||||| |||||| | |||||||| |||||||| || ||||||||||||||||
Sbjct: 127329 ggctcaacaaggacaaggccatgttcaccattgtcgtctccggcacggacagggtgctca 127388

                                                   
Query: 395    agncagtcattgagcagctcaataagctggtcaacgt 431
              |   |||||| ||||||||||| ||||| ||||||||
Sbjct: 127389 accaagtcatcgagcagctcaacaagcttgtcaacgt 127425
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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0496E03
          Length = 138622

 Score =  258 bits (130), Expect = 1e-65
 Identities = 195/217 (89%)
 Strand = Plus / Plus

                                                                         
Query: 215   gggattgcagggtgcggcgccacacgatttctgtgttcgtcggggacgagagcggcatga 274
             |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 39507 gggaatgcagggtgcggcgccacacgatctctgtgttcgtcggcgacgagagcgggatga 39566

                                                                         
Query: 275   taaacaggattgccggggtcttcgcaaggagaggctacaacatcgagtccctcgccgtgg 334
             ||||| |||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||
Sbjct: 39567 taaaccggatcgccggggtgttcgccaggagagggtacaacatcgagtcgctcgccgtgg 39626

                                                                         
Query: 335   ggctcaacaaggataaggccctcttcaccatcgtcgtctcggggacggacagggtgctca 394
             ||||||||||||| |||||| | |||||||| |||||||| || ||||||||||||||||
Sbjct: 39627 ggctcaacaaggacaaggccatgttcaccattgtcgtctccggcacggacagggtgctca 39686

                                                  
Query: 395   agncagtcattgagcagctcaataagctggtcaacgt 431
             |   |||||| ||||||||||| ||||| ||||||||
Sbjct: 39687 accaagtcatcgagcagctcaacaagcttgtcaacgt 39723
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>gb|BT008999.1| Triticum aestivum clone wdk2c.pk015.a13:fis, full insert mRNA
           sequence
          Length = 724

 Score =  198 bits (100), Expect = 1e-47
 Identities = 123/131 (93%)
 Strand = Plus / Plus

                                                                       
Query: 301 aggagaggctacaacatcgagtccctcgccgtggggctcaacaaggataaggccctcttc 360
           ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 11  aggagaggctacaacatcgagtcgctcgccgtggggcttaacaaggacaaggccctcttc 70

                                                                       
Query: 361 accatcgtcgtctcggggacggacagggtgctcaagncagtcattgagcagctcaataag 420
           |||||||||||||| |||||||| ||||||||||||  ||||||||||||||||||||||
Sbjct: 71  accatcgtcgtctccgggacggatagggtgctcaagcaagtcattgagcagctcaataag 130

                      
Query: 421 ctggtcaacgt 431
           || ||||||||
Sbjct: 131 ctcgtcaacgt 141
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>gb|AY105043.1| Zea mays PCO069007 mRNA sequence
          Length = 1380

 Score =  145 bits (73), Expect = 1e-31
 Identities = 102/112 (91%)
 Strand = Plus / Plus

                                                                       
Query: 320 agtccctcgccgtggggctcaacaaggataaggccctcttcaccatcgtcgtctcgggga 379
           |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 11  agtcgctcgccgtggggctcaacaaggacaaggccctcttcaccattgtcgtctccggga 70

                                                               
Query: 380 cggacagggtgctcaagncagtcattgagcagctcaataagctggtcaacgt 431
           | ||||||||||||||   |||||| ||||||||||||||||| ||||||||
Sbjct: 71  ccgacagggtgctcaaccaagtcatcgagcagctcaataagcttgtcaacgt 122
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>gb|AC117679.8| Mus musculus chromosome 9, clone RP23-435I22, complete sequence
          Length = 213032

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 109    tccttccgccccttgcgccgccg 131
              |||||||||||||||||||||||
Sbjct: 104239 tccttccgccccttgcgccgccg 104217
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 171  cgccaccgtgtcgacggtcgccg 193
            |||||||||||||||||||||||
Sbjct: 3132 cgccaccgtgtcgacggtcgccg 3110
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>dbj|AK007226.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700121J11 product:ATPase,
           Ca++-sequestering, full insert sequence
          Length = 935

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 109 tccttccgccccttgcgccgccg 131
           |||||||||||||||||||||||
Sbjct: 107 tccttccgccccttgcgccgccg 129
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>ref|XM_368927.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00317.4) partial mRNA
          Length = 1314

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 361 accatcgtcgtctcggggacg 381
           |||||||||||||||||||||
Sbjct: 526 accatcgtcgtctcggggacg 546
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 407    agcagctcaataagctggtcaacgt 431
              |||||||||| ||||||||||||||
Sbjct: 709613 agcagctcaacaagctggtcaacgt 709637
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 57      gccgtcgccatcggcggcccc 77
               |||||||||||||||||||||
Sbjct: 2841508 gccgtcgccatcggcggcccc 2841488
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>ref|NM_179843.1| Arabidopsis thaliana acetolactate synthase/ amino acid binding
           AT2G31810 transcript variant AT2G31810.3 mRNA, complete
           cds
          Length = 1714

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 259 gacgagagcggcatgataaacaggattgccggggtcttcgcaaggagaggctacaa 314
           ||||| ||||| ||||| || |||||||| || || || ||||||||||| |||||
Sbjct: 332 gacgaaagcggaatgattaataggattgcaggagtgtttgcaaggagaggatacaa 387
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>ref|NM_179841.1| Arabidopsis thaliana acetolactate synthase/ amino acid binding
           AT2G31810 transcript variant AT2G31810.1 mRNA, complete
           cds
          Length = 1780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 259 gacgagagcggcatgataaacaggattgccggggtcttcgcaaggagaggctacaa 314
           ||||| ||||| ||||| || |||||||| || || || ||||||||||| |||||
Sbjct: 332 gacgaaagcggaatgattaataggattgcaggagtgtttgcaaggagaggatacaa 387
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>ref|NM_179842.1| Arabidopsis thaliana acetolactate synthase/ amino acid binding
           AT2G31810 transcript variant AT2G31810.2 mRNA, complete
           cds
          Length = 1783

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 259 gacgagagcggcatgataaacaggattgccggggtcttcgcaaggagaggctacaa 314
           ||||| ||||| ||||| || |||||||| || || || ||||||||||| |||||
Sbjct: 332 gacgaaagcggaatgattaataggattgcaggagtgtttgcaaggagaggatacaa 387
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>ref|XM_466521.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 528

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 tccgccccttgcgccgccgc 132
           ||||||||||||||||||||
Sbjct: 125 tccgccccttgcgccgccgc 106
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 113     tccgccccttgcgccgccgcggag 136
               |||||||||| |||||||||||||
Sbjct: 2148993 tccgccccttccgccgccgcggag 2149016
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>gb|AY658135.1| Synthetic construct Peudomonas aeruginosa clone FLH044832.01F
           PA2749 gene, partial cds
          Length = 714

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 87  cactcgatgcgccgcgcgcg 106
           ||||||||||||||||||||
Sbjct: 227 cactcgatgcgccgcgcgcg 208
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>gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0088F07, complete sequence
          Length = 139180

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   tccgccccttgcgccgccgc 132
             ||||||||||||||||||||
Sbjct: 76239 tccgccccttgcgccgccgc 76258
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   tgagcagctcaataagctgg 424
             ||||||||||||||||||||
Sbjct: 66641 tgagcagctcaataagctgg 66622
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>ref|XM_883491.1| Leishmania major strain Friedlin hypothetical protein (L2969.06)
            partial mRNA
          Length = 9039

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 45   ccaccacctccggccgtcgccatc 68
            |||||||| |||||||||||||||
Sbjct: 1685 ccaccaccgccggccgtcgccatc 1662
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>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end
          Length = 225394

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     ccaccacctccggccgtcgccatc 68
              |||||||| |||||||||||||||
Sbjct: 198427 ccaccaccgccggccgtcgccatc 198450
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>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     caccgcccaccacctccggc 58
              ||||||||||||||||||||
Sbjct: 130693 caccgcccaccacctccggc 130712
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>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    caccgcccaccacctccggc 58
             ||||||||||||||||||||
Sbjct: 47381 caccgcccaccacctccggc 47362
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>gb|AY103307.1| Arabidopsis thaliana At2g31810/F20M17.15 mRNA, complete cds
          Length = 1476

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 259 gacgagagcggcatgataaacaggattgccggggtcttcgcaaggagaggctacaa 314
           ||||| ||||| ||||| || |||||||| || || || ||||||||||| |||||
Sbjct: 283 gacgaaagcggaatgattaataggattgcaggagtgtttgcaaggagaggatacaa 338
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     ccatgtccgtcgccaccgcc 45
              ||||||||||||||||||||
Sbjct: 420762 ccatgtccgtcgccaccgcc 420781
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>gb|AC006533.8| Arabidopsis thaliana chromosome 2 clone F20M17 map nga361, complete
             sequence
          Length = 100665

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 259   gacgagagcggcatgataaacaggattgccggggtcttcgcaaggagaggctacaa 314
             ||||| ||||| ||||| || |||||||| || || || ||||||||||| |||||
Sbjct: 61808 gacgaaagcggaatgattaataggattgcaggagtgtttgcaaggagaggatacaa 61753
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>ref|XM_684411.1| PREDICTED: Danio rerio abnormal spindles (aspm), mRNA
          Length = 10416

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 296  tcgcaaggagaggctacaac 315
            ||||||||||||||||||||
Sbjct: 9393 tcgcaaggagaggctacaac 9412
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>gb|AY058881.1| Arabidopsis thaliana At2g31810/F20M17.15 mRNA, complete cds
          Length = 1675

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 259 gacgagagcggcatgataaacaggattgccggggtcttcgcaaggagaggctacaa 314
           ||||| ||||| ||||| || |||||||| || || || ||||||||||| |||||
Sbjct: 332 gacgaaagcggaatgattaataggattgcaggagtgtttgcaaggagaggatacaa 387
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 247     gtgttcgtcggggacgagagcggc 270
               |||||||||| |||||||||||||
Sbjct: 3542859 gtgttcgtcgaggacgagagcggc 3542882



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 123     gcgccgccgcggagtcgccg 142
               ||||||||||||||||||||
Sbjct: 2424413 gcgccgccgcggagtcgccg 2424432
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 32       ccgtcgccaccgcccaccac 51
                ||||||||||||||||||||
Sbjct: 10761180 ccgtcgccaccgcccaccac 10761161
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 36       cgccaccgcccaccacctcc 55
                ||||||||||||||||||||
Sbjct: 28271095 cgccaccgcccaccacctcc 28271114



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 33       cgtcgccaccgcccaccacctccggccg 60
                ||||||||||||||||| || |||||||
Sbjct: 16486521 cgtcgccaccgcccaccgccaccggccg 16486494
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 113      tccgccccttgcgccgccgc 132
                ||||||||||||||||||||
Sbjct: 21195456 tccgccccttgcgccgccgc 21195475
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 56      ggccgtcgccatcggcggcc 75
               ||||||||||||||||||||
Sbjct: 4231393 ggccgtcgccatcggcggcc 4231412
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>gb|AE004703.1| Pseudomonas aeruginosa PAO1, section 264 of 529 of the complete
            genome
          Length = 10672

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 87   cactcgatgcgccgcgcgcg 106
            ||||||||||||||||||||
Sbjct: 2481 cactcgatgcgccgcgcgcg 2462
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>dbj|AP005448.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0404G11
          Length = 167623

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 33     cgtcgccaccgcccaccacctccggccg 60
              ||||||||||||||||| || |||||||
Sbjct: 127312 cgtcgccaccgcccaccgccaccggccg 127285
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>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_D09
          Length = 138615

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   tccgccccttgcgccgccgc 132
             ||||||||||||||||||||
Sbjct: 84601 tccgccccttgcgccgccgc 84582
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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0085I16
          Length = 141701

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    ccgtcgccaccgcccaccac 51
             ||||||||||||||||||||
Sbjct: 97798 ccgtcgccaccgcccaccac 97779
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>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0625E02
          Length = 153921

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     cgccaccgcccaccacctcc 55
              ||||||||||||||||||||
Sbjct: 126640 cgccaccgcccaccacctcc 126659
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>emb|CR388178.5| Zebrafish DNA sequence from clone DKEY-114D20 in linkage group 22,
              complete sequence
          Length = 171742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    tcgcaaggagaggctacaac 315
              ||||||||||||||||||||
Sbjct: 123507 tcgcaaggagaggctacaac 123526


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,438,959
Number of Sequences: 3902068
Number of extensions: 2438959
Number of successful extensions: 46958
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46118
Number of HSP's gapped (non-prelim): 840
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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