>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +2

Query: 2   PPKHRRHSPPLAHPRAASL*LPPREIXXXXXXXXARSHPSTTRSQPA 142
           PPK R  SPP    R AS   PP+           RS P T R  P+
Sbjct: 609 PPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPS 655

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +2

Query: 2   PPKHRRHSPPLAHPRAASL*LPPREIXXXXXXXXARSHPSTTRSQPA 142
           PPK R  SPP    R AS   PP+           RS P T R  P+
Sbjct: 623 PPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPS 669

>BUD8_YEAST (P41698) Bud site selection protein BUD8|
          Length = 603

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = +3

Query: 9   SIAATLRLSLIRVQHLSSSPLERSHSRVSSS------KQGHIPAPPGANPR 143
           S A T+  S++  + +  SP+E+ HSRV SS       +G+  +  G  PR
Sbjct: 154 SCALTISTSVLMGEDVEGSPIEQEHSRVVSSLYSSLANRGNDESKNGTPPR 204

>POL1_GFLV (P29149) RNA1 polyprotein (P1) [Contains: P1A protein (1A) (Protease|
            cofactor); Putative ATP-dependent helicase (EC 3.6.1.-)
            (NTP-binding protein) (NTB) (1B) (Membrane-binding
            protein); Viral genome-linked protein (1C-VPg); Picornain
            3C-like pr
          Length = 2284

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 36   LIRVQHLSSSPLERSHSRVSSSKQGHIPAPPGANP-RRQW 152
            L+RV+ LS        SR+   K+GH+P   G NP  R+W
Sbjct: 1684 LLRVKFLS-------FSRLLMKKRGHLPCQVGINPYSREW 1716


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,512,729
Number of Sequences: 219361
Number of extensions: 286162
Number of successful extensions: 1234
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)