Clone Information

BLAST Search Result

Clone Name	bast62d09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AL596225.11\| Human DNA sequence from clone RP11-30D7 on chro...	44	0.22
2	emb\|AL122004.17\|HSJ678E16 Human DNA sequence from clone RP4-678E...	44	0.22
3	emb\|AL833872.1\|HSM805165 Homo sapiens mRNA; cDNA DKFZp761P0423 (...	44	0.22
4	gb\|AC079257.7\| Homo sapiens BAC clone RP11-367I6 from 4, complet...	44	0.22
5	ref\|XM_937796.1\| PREDICTED: Homo sapiens hypothetical protein DK...	44	0.22
6	ref\|XM_291277.4\| PREDICTED: Homo sapiens hypothetical protein DK...	44	0.22
7	gb\|AY219866.1\| Homo sapiens caspase 3, apoptosis-related cystein...	44	0.22
8	gb\|AC068353.34\| Homo sapiens chromosome 8, clone RP11-399J23, co...	44	0.22
9	dbj\|BA000035.2\| Corynebacterium efficiens YS-314 DNA, complete g...	44	0.22
10	dbj\|AK122582.1\| Homo sapiens mRNA for FLJ00269 protein	44	0.22
11	ref\|XM_580316.2\| PREDICTED: Bos taurus similar to plexin A2 (LOC...	42	0.87
12	ref\|XM_537009.2\| PREDICTED: Canis familiaris similar to Na(+)/H(...	42	0.87
13	gb\|DQ149844.1\| Homo sapiens solute carrier family 4, anion excha...	42	0.87
14	dbj\|AP007255.1\| Magnetospirillum magneticum AMB-1 DNA, complete ...	42	0.87
15	gb\|AC008743.9\| Homo sapiens chromosome 19 clone CTD-2560K21, com...	42	0.87
16	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	0.87
17	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	0.87
18	emb\|AL731740.4\|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb...	42	0.87
19	ref\|XM_478804.1\| Oryza sativa (japonica cultivar-group), mRNA	40	3.5
20	gb\|AC153624.20\| Mus musculus 6 BAC RP23-117P3 (Roswell Park Canc...	40	3.5
21	gb\|AC146440.5\| Pan troglodytes BAC clone RP43-11P11 from 7, comp...	40	3.5
22	ref\|XM_539199.2\| PREDICTED: Canis familiaris similar to tigger t...	40	3.5
23	ref\|XM_546786.2\| PREDICTED: Canis familiaris similar to Zinc fin...	40	3.5
24	ref\|XM_502711.1\| Yarrowia lipolytica CLIB122, YALI0D11704g predi...	40	3.5
25	emb\|AL158823.11\| Human DNA sequence from clone RP11-151F5 on chr...	40	3.5
26	gb\|AC141480.4\| Mus musculus BAC clone RP23-210I6 from chromosome...	40	3.5
27	gb\|AC144537.16\| Glycine max clone gmw1-42i18, complete sequence	40	3.5
28	gb\|AF434666.1\|AF434666 Petromyzon marinus Hox4w (hox4w) mRNA, pa...	40	3.5
29	gb\|AC010973.6\| Homo sapiens BAC clone RP11-148K1 from 7, complet...	40	3.5
30	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	3.5
31	dbj\|AP004298.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	3.5
32	dbj\|AP003758.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	3.5
33	dbj\|AP005690.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	3.5
34	dbj\|AK121028.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	3.5
35	dbj\|AP003845.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	3.5
36	emb\|CR761139.2\| Xenopus tropicalis finished cDNA, clone TEgg098c06	40	3.5
37	gb\|AC006123.1\|AC006123 Homo sapiens chromosome 19, cosmid R28177...	40	3.5
38	gb\|AC140241.3\| Mus musculus BAC clone RP23-283I15 from chromosom...	40	3.5
39	emb\|AL845345.9\|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa...	40	3.5
40	gb\|AC003107.1\|AC003107 Human DNA from chromosome 19-specific cos...	40	3.5
41	emb\|CR382130.1\| Yarrowia lipolytica chromosome D of strain CLIB1...	40	3.5
42	gb\|AC163715.5\| Mus musculus BAC clone RP23-367H6 from chromosome...	40	3.5

>emb|AL596225.11| Human DNA sequence from clone RP11-30D7 on chromosome 1 Contains part of
              the gene for a novel protein (FLJ31862, FLJ22091, FLJ10597)
              and two CpG islands, complete sequence
          Length = 148750

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 229    cccggccccggctcccgcctcc 250
              ||||||||||||||||||||||
Sbjct: 147550 cccggccccggctcccgcctcc 147529

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>emb|AL122004.17|HSJ678E16 Human DNA sequence from clone RP4-678E16 on chromosome 1p32.3-34.2
           Contains the 3' end of the gene for a novel protein
           (FLJ31862, FLJ22091, FLJ10597), the gene for a novel
           DUF829 domain-containing protein, two novel genes and
           four CpG islands, complete sequence
          Length = 107037

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 229 cccggccccggctcccgcctcc 250
           ||||||||||||||||||||||
Sbjct: 800 cccggccccggctcccgcctcc 779

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>emb|AL833872.1|HSM805165 Homo sapiens mRNA; cDNA DKFZp761P0423 (from clone DKFZp761P0423)
          Length = 2200

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 227  gccccggccccggctcccgcctccgacgccgccg 260
            ||||| ||||||||||||||| ||| ||||||||
Sbjct: 1043 gcccccgccccggctcccgcccccgccgccgccg 1076

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>gb|AC079257.7| Homo sapiens BAC clone RP11-367I6 from 4, complete sequence
          Length = 133401

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 226   ggccccggccccggctcccgcctccg 251
             ||||||||||| ||||||||||||||
Sbjct: 22979 ggccccggcccaggctcccgcctccg 23004

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>ref|XM_937796.1| PREDICTED: Homo sapiens hypothetical protein DKFZp761P0423
            (DKFZp761P0423), mRNA
          Length = 4627

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 227  gccccggccccggctcccgcctccgacgccgccg 260
            ||||| ||||||||||||||| ||| ||||||||
Sbjct: 3493 gcccccgccccggctcccgcccccgccgccgccg 3526

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>ref|XM_291277.4| PREDICTED: Homo sapiens hypothetical protein DKFZp761P0423
            (DKFZp761P0423), mRNA
          Length = 4621

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 227  gccccggccccggctcccgcctccgacgccgccg 260
            ||||| ||||||||||||||| ||| ||||||||
Sbjct: 3487 gcccccgccccggctcccgcccccgccgccgccg 3520

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>gb|AY219866.1| Homo sapiens caspase 3, apoptosis-related cysteine protease (CASP3)
           gene, complete cds
          Length = 23418

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 226 ggccccggccccggctcccgcctccg 251
           ||||||||||| ||||||||||||||
Sbjct: 705 ggccccggcccaggctcccgcctccg 680

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>gb|AC068353.34| Homo sapiens chromosome 8, clone RP11-399J23, complete sequence
          Length = 105330

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 227   gccccggccccggctcccgcctccgacgccgccg 260
             ||||| ||||||||||||||| ||| ||||||||
Sbjct: 57104 gcccccgccccggctcccgcccccgccgccgccg 57071

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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 239     gctcccgcctccgacgccgccg 260
               ||||||||||||||||||||||
Sbjct: 1378795 gctcccgcctccgacgccgccg 1378816

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>dbj|AK122582.1| Homo sapiens mRNA for FLJ00269 protein
          Length = 4564

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 227  gccccggccccggctcccgcctccgacgccgccg 260
            ||||| ||||||||||||||| ||| ||||||||
Sbjct: 3431 gcccccgccccggctcccgcccccgccgccgccg 3464

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>ref|XM_580316.2| PREDICTED: Bos taurus similar to plexin A2 (LOC538434), mRNA
          Length = 3686

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 230 ccggccccggctcccgcctcc 250
           |||||||||||||||||||||
Sbjct: 749 ccggccccggctcccgcctcc 729

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>ref|XM_537009.2| PREDICTED: Canis familiaris similar to Na(+)/H(+) exchange regulatory
            cofactor NHE-RF2 (NHERF-2) (Tyrosine kinase activator
            protein 1) (TKA-1) (SRY interacting protein 1) (SIP-1)
            (Solute carrier family 9 isoform A3 regulatory factor 2)
            (NHE3 kinase A regulatory protein E3KARP... (LOC479884),
            mRNA
          Length = 2209

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 115  tcccagcaccaccaggagcca 135
            |||||||||||||||||||||
Sbjct: 2020 tcccagcaccaccaggagcca 2040

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>gb|DQ149844.1| Homo sapiens solute carrier family 4, anion exchanger, member 2
            (erythrocyte membrane protein band 3-like 1) (SLC4A2)
            gene, complete cds
          Length = 20778

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 227  gccccggccccggctcccgcctccg 251
            ||||||||||| |||||||||||||
Sbjct: 1822 gccccggcccccgctcccgcctccg 1846

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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 230     ccggccccggctcccgcctccgacgccgc 258
               |||||||||||||||||| ||| ||||||
Sbjct: 2140992 ccggccccggctcccgccgccgccgccgc 2141020

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>gb|AC008743.9| Homo sapiens chromosome 19 clone CTD-2560K21, complete sequence
          Length = 192097

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 226   ggccccggccccggctcccgcctccgacg 254
             ||||||||||||||| |||||||| ||||
Sbjct: 68000 ggccccggccccggcccccgcctcggacg 68028

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 246     cctccgacgccgccgtcgtcg 266
               |||||||||||||||||||||
Sbjct: 6843889 cctccgacgccgccgtcgtcg 6843869



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 246     cctccgacgccgccgtcgtcg 266
               |||||||||||||||||||||
Sbjct: 6834510 cctccgacgccgccgtcgtcg 6834490



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 243      ccgcctccgacgccgccgtcgtcg 266
                ||||| ||||||||||||||||||
Sbjct: 18659815 ccgccgccgacgccgccgtcgtcg 18659838

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 246     cctccgacgccgccgtcgtcg 266
               |||||||||||||||||||||
Sbjct: 6843768 cctccgacgccgccgtcgtcg 6843748



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 246     cctccgacgccgccgtcgtcg 266
               |||||||||||||||||||||
Sbjct: 6834389 cctccgacgccgccgtcgtcg 6834369



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 243      ccgcctccgacgccgccgtcgtcg 266
                ||||| ||||||||||||||||||
Sbjct: 18586041 ccgccgccgacgccgccgtcgtcg 18586064

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>emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb0001P19 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 144563

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 246    cctccgacgccgccgtcgtcg 266
              |||||||||||||||||||||
Sbjct: 127528 cctccgacgccgccgtcgtcg 127548



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 246    cctccgacgccgccgtcgtcg 266
              |||||||||||||||||||||
Sbjct: 118149 cctccgacgccgccgtcgtcg 118169

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>ref|XM_478804.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 384

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 caatggccggtctcaggatg 166
           ||||||||||||||||||||
Sbjct: 209 caatggccggtctcaggatg 228

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>gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224115

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    atcccagcaccaccaggagc 133
              ||||||||||||||||||||
Sbjct: 150729 atcccagcaccaccaggagc 150748

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>gb|AC146440.5| Pan troglodytes BAC clone RP43-11P11 from 7, complete sequence
          Length = 181369

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 227    gccccggccccggctcccgcctcc 250
              ||||||||||| ||||||||||||
Sbjct: 161774 gccccggcccccgctcccgcctcc 161797

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>ref|XM_539199.2| PREDICTED: Canis familiaris similar to tigger transposable element
            derived 5 (LOC482078), mRNA
          Length = 2544

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  aggccccggccccggctccc 244
            ||||||||||||||||||||
Sbjct: 1239 aggccccggccccggctccc 1258

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>ref|XM_546786.2| PREDICTED: Canis familiaris similar to Zinc finger protein 469
            (LOC489666), mRNA
          Length = 11049

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  cccagcaccaccaggagcca 135
            ||||||||||||||||||||
Sbjct: 2773 cccagcaccaccaggagcca 2792

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>ref|XM_502711.1| Yarrowia lipolytica CLIB122, YALI0D11704g predicted mRNA
          Length = 1530

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 84  agcagagtcagcagcagcaa 103
           ||||||||||||||||||||
Sbjct: 183 agcagagtcagcagcagcaa 164

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>emb|AL158823.11| Human DNA sequence from clone RP11-151F5 on chromosome 9 Contains part of
              the AKAP2 (PALM2) gene for A kinase (PRKA) anchor protein 2
              (paralemmin 2), a ribosomal protein L21 (RPL21) pseudogene
              and a CpG island, complete sequence
          Length = 175558

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 116    cccagcaccaccaggagccaaccc 139
              |||||||||| |||||||||||||
Sbjct: 158752 cccagcaccagcaggagccaaccc 158729

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>gb|AC141480.4| Mus musculus BAC clone RP23-210I6 from chromosome 3, complete sequence
          Length = 209458

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    catctctctagctcccccct 70
             ||||||||||||||||||||
Sbjct: 81007 catctctctagctcccccct 81026

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>gb|AC144537.16| Glycine max clone gmw1-42i18, complete sequence
          Length = 113397

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 94     gcagcagcaagcaaggtcacatcccagc 121
              ||||||||||| ||| ||||||||||||
Sbjct: 113284 gcagcagcaagtaagctcacatcccagc 113311

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>gb|AF434666.1|AF434666 Petromyzon marinus Hox4w (hox4w) mRNA, partial cds
          Length = 816

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  cagcagagtcagcagcagca 102
           ||||||||||||||||||||
Sbjct: 436 cagcagagtcagcagcagca 455

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>gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complete sequence
          Length = 222605

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 227    gccccggccccggctcccgcctcc 250
              ||||||||||| ||||||||||||
Sbjct: 146173 gccccggcccccgctcccgcctcc 146150

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 147      caatggccggtctcaggatg 166
                ||||||||||||||||||||
Sbjct: 23149245 caatggccggtctcaggatg 23149264



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 243      ccgcctccgacgccgccgtcgtcg 266
                ||||||||| ||||||||||||||
Sbjct: 13726500 ccgcctccgccgccgccgtcgtcg 13726477

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>dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0409D09
          Length = 150485

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   ccgcctccgacgccgccgtcgtcg 266
             ||||||||| ||||||||||||||
Sbjct: 77492 ccgcctccgccgccgccgtcgtcg 77469

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>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1562_B11
          Length = 112144

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   caatggccggtctcaggatg 166
             ||||||||||||||||||||
Sbjct: 12159 caatggccggtctcaggatg 12178

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>dbj|AP005690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0052I14
          Length = 168285

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   ccgcctccgacgccgccgtcgtcg 266
             ||||||||| ||||||||||||||
Sbjct: 11664 ccgcctccgccgccgccgtcgtcg 11641

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>dbj|AK121028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050G17, full
           insert sequence
          Length = 2011

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 243 ccgcctccgacgccgccgtcgtcg 266
           ||||| ||||||||||||||||||
Sbjct: 453 ccgccgccgacgccgccgtcgtcg 476

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>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1699_E05
          Length = 170666

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   caatggccggtctcaggatg 166
             ||||||||||||||||||||
Sbjct: 93429 caatggccggtctcaggatg 93448

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>emb|CR761139.2| Xenopus tropicalis finished cDNA, clone TEgg098c06
          Length = 889

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  cagcagagtcagcagcagca 102
           ||||||||||||||||||||
Sbjct: 454 cagcagagtcagcagcagca 473

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>gb|AC006123.1|AC006123 Homo sapiens chromosome 19, cosmid R28177, complete sequence
          Length = 45858

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   gtcacatcccagcaccacca 128
             ||||||||||||||||||||
Sbjct: 35324 gtcacatcccagcaccacca 35343

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>gb|AC140241.3| Mus musculus BAC clone RP23-283I15 from chromosome 17, complete
             sequence
          Length = 158575

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 90    gtcagcagcagcaagcaaggtcac 113
             |||||||||||| |||||||||||
Sbjct: 67792 gtcagcagcagccagcaaggtcac 67769

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>emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa0023G11 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 180599

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   ccgcctccgacgccgccgtcgtcg 266
             ||||| ||||||||||||||||||
Sbjct: 93267 ccgccgccgacgccgccgtcgtcg 93290

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>gb|AC003107.1|AC003107 Human DNA from chromosome 19-specific cosmid R30064 containing the
            COMP gene, genomic sequence, complete sequence
          Length = 46275

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 109  gtcacatcccagcaccacca 128
            ||||||||||||||||||||
Sbjct: 1446 gtcacatcccagcaccacca 1465

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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 84      agcagagtcagcagcagcaa 103
               ||||||||||||||||||||
Sbjct: 1452668 agcagagtcagcagcagcaa 1452687

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>gb|AC163715.5| Mus musculus BAC clone RP23-367H6 from chromosome 17, complete sequence
          Length = 208781

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 90    gtcagcagcagcaagcaaggtcac 113
             |||||||||||| |||||||||||
Sbjct: 97322 gtcagcagcagccagcaaggtcac 97299


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,186,508
Number of Sequences: 3902068
Number of extensions: 2186508
Number of successful extensions: 53028
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52552
Number of HSP's gapped (non-prelim): 476
length of query: 266
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 244
effective length of database: 17,147,199,772
effective search space: 4183916744368
effective search space used: 4183916744368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result