ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62d05 |
|---|---|
| Clone Library Name | barley_pub |
>FBRL1_ARATH (Q9FEF8) Fibrillarin-1 (SKP1-interacting partner 7)| Length = 308 Score = 95.9 bits (237), Expect = 4e-20 Identities = 44/58 (75%), Positives = 51/58 (87%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 GMKGG+KV+V PH+H GVFIAK KEDAL TKN+V GE+VY EKR+SVQNED +KVEYR Sbjct: 62 GMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYR 119
>FBRL2_ARATH (Q94AH9) Fibrillarin-2 (Fibrillarin-like protein)| Length = 320 Score = 94.4 bits (233), Expect = 1e-19 Identities = 43/58 (74%), Positives = 50/58 (86%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 GMKGG+KV+V PH+H GVFIAK KEDAL TKN+V GE+VY EKR+SVQNED +K EYR Sbjct: 73 GMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYR 130
>FBRL3_ARATH (Q9FHB3) Putative fibrillarin-3| Length = 292 Score = 86.7 bits (213), Expect = 3e-17 Identities = 39/58 (67%), Positives = 48/58 (82%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 G+KGG+KV+V PH+H GVF+AK+K DAL TKN+V GE +Y EKR+ VQNED S VEYR Sbjct: 52 GIKGGSKVLVTPHRHAGVFVAKSKADALVTKNLVPGEIIYNEKRIFVQNEDRSTVEYR 109
>FBRL_SCHPO (P35551) Fibrillarin| Length = 305 Score = 85.1 bits (209), Expect = 7e-17 Identities = 38/58 (65%), Positives = 47/58 (81%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 G KGGAKV++ PH+H GVFIA+ KED L T+N+V GESVY EKR+SV + D +KVEYR Sbjct: 66 GAKGGAKVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDSPDGTKVEYR 123
>FBRL_CANGA (Q6FN88) Fibrillarin| Length = 323 Score = 84.0 bits (206), Expect = 2e-16 Identities = 44/64 (68%), Positives = 49/64 (76%), Gaps = 6/64 (9%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQ---NEDS---SK 438 G KGGAKVV+ PHKHDGV+IA+ KED L TKNM GESVYGEKRVSV+ ED +K Sbjct: 75 GAKGGAKVVIEPHKHDGVYIARGKEDLLVTKNMAPGESVYGEKRVSVEEPSKEDGVPPTK 134 Query: 439 VEYR 450 VEYR Sbjct: 135 VEYR 138
>FBRL_ASHGO (Q756P0) Fibrillarin| Length = 326 Score = 80.5 bits (197), Expect = 2e-15 Identities = 41/64 (64%), Positives = 47/64 (73%), Gaps = 6/64 (9%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDS------SK 438 G KGGAKVV+ PHKH GVFIA+ KED L TKN+ GESVYGEKR+SV+ S +K Sbjct: 80 GAKGGAKVVIEPHKHAGVFIARGKEDLLVTKNVAPGESVYGEKRISVEEPASEEGVPPTK 139 Query: 439 VEYR 450 VEYR Sbjct: 140 VEYR 143
>FBRL_YEAST (P15646) Fibrillarin (Nucleolar protein 1)| Length = 327 Score = 78.2 bits (191), Expect = 9e-15 Identities = 40/64 (62%), Positives = 48/64 (75%), Gaps = 6/64 (9%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQ---NEDS---SK 438 G +GGAKVV+ PH+H GV+IA+ KED L TKNM GESVYGEKR+SV+ ED +K Sbjct: 79 GARGGAKVVIEPHRHAGVYIARGKEDLLVTKNMAPGESVYGEKRISVEEPSKEDGVPPTK 138 Query: 439 VEYR 450 VEYR Sbjct: 139 VEYR 142
>FBRL_CAEEL (Q22053) Fibrillarin| Length = 352 Score = 77.8 bits (190), Expect = 1e-14 Identities = 39/58 (67%), Positives = 45/58 (77%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 GM+GG VVV PH+ GVFI K KEDAL TKNMV GESVYGEKRVSV ++ + +EYR Sbjct: 110 GMRGGKTVVVEPHRLGGVFIVKGKEDALATKNMVVGESVYGEKRVSV-DDGAGSIEYR 166
>FBRL_DROER (Q8I1F4) Fibrillarin| Length = 345 Score = 77.4 bits (189), Expect = 2e-14 Identities = 35/58 (60%), Positives = 44/58 (75%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 G KGG V + PH+H+GVFIA+ KEDAL T+N V G VYGEKR+SV+N + K+EYR Sbjct: 105 GFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGEKIEYR 161
>FBRL_HUMAN (P22087) Fibrillarin (34 kDa nucleolar scleroderma antigen)| Length = 321 Score = 76.3 bits (186), Expect = 3e-14 Identities = 36/58 (62%), Positives = 45/58 (77%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 G + G V+V PH+H+GVFI + KEDAL TKN+V GESVYGEKRVS+ +E K+EYR Sbjct: 79 GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYR 135
>FBRL_RAT (P22509) Fibrillarin (Nucleolar protein 1)| Length = 327 Score = 76.3 bits (186), Expect = 3e-14 Identities = 36/58 (62%), Positives = 45/58 (77%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 G + G V+V PH+H+GVFI + KEDAL TKN+V GESVYGEKRVS+ +E K+EYR Sbjct: 85 GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYR 141
>FBRL_MOUSE (P35550) Fibrillarin (Nucleolar protein 1)| Length = 327 Score = 76.3 bits (186), Expect = 3e-14 Identities = 36/58 (62%), Positives = 45/58 (77%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 G + G V+V PH+H+GVFI + KEDAL TKN+V GESVYGEKRVS+ +E K+EYR Sbjct: 85 GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYR 141
>FBRL_XENLA (P22232) Fibrillarin| Length = 323 Score = 75.5 bits (184), Expect = 6e-14 Identities = 35/58 (60%), Positives = 44/58 (75%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 G G KV+V PH+H+G+FI + KEDAL TKN+V GESVYGEKR+SV+ + K EYR Sbjct: 81 GFGAGRKVIVEPHRHEGIFICRGKEDALVTKNLVPGESVYGEKRISVE-DGEVKTEYR 137
>FBRL_DEBHA (Q6BQ34) Fibrillarin| Length = 329 Score = 75.5 bits (184), Expect = 6e-14 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 6/64 (9%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDS------SK 438 G +GGAKVV+ PH+H GVFIA+ KED L T+N+ GESVYGEKR+S++ +K Sbjct: 81 GARGGAKVVIEPHRHAGVFIARGKEDLLVTRNIAPGESVYGEKRISIEEPSKEEGAAPTK 140 Query: 439 VEYR 450 +EYR Sbjct: 141 IEYR 144
>FBRL_DROME (Q9W1V3) Fibrillarin| Length = 344 Score = 75.1 bits (183), Expect = 8e-14 Identities = 34/58 (58%), Positives = 43/58 (74%) Frame = +1 Query: 277 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 G KGG V + PH+H+GVFIA+ KEDAL T+N V G VYGEKR+SV+ + K+EYR Sbjct: 104 GFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVET-NGEKIEYR 160
>FBRL_NEUCR (Q9HE26) Fibrillarin| Length = 323 Score = 70.5 bits (171), Expect = 2e-12 Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 10/68 (14%) Frame = +1 Query: 277 GMKGGA---KVVVVPHKHDGVFIAKA-KEDALCTKNMVAGESVYGEKRVSVQNED----- 429 G KGGA KV+V PH+H GVF+A+ KED L T N+V GESVYGEKR+SV+N Sbjct: 70 GAKGGAAGKKVIVEPHRHKGVFVARGGKEDLLATVNLVPGESVYGEKRISVENASKEEGG 129 Query: 430 -SSKVEYR 450 S+K EYR Sbjct: 130 ASTKTEYR 137
>FBRL_GIALA (Q24957) Fibrillarin| Length = 327 Score = 65.9 bits (159), Expect = 5e-11 Identities = 32/59 (54%), Positives = 44/59 (74%), Gaps = 1/59 (1%) Frame = +1 Query: 277 GMKGGAKVVVVPH-KHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 G KGGAK +V PH K+DG+FI+ + D L TK++ G +VYGEKR+SV+ + SK+EYR Sbjct: 87 GFKGGAKTMVKPHPKYDGIFISHGRGDVLVTKSLAPGVAVYGEKRISVEGTE-SKIEYR 144
>FBRL_TETTH (Q27200) Fibrillarin| Length = 294 Score = 63.5 bits (153), Expect = 2e-10 Identities = 32/60 (53%), Positives = 43/60 (71%), Gaps = 2/60 (3%) Frame = +1 Query: 277 GMKG--GAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 G KG G K ++V H+ +GVFI K +++AL TKN GESVY EKR+SV+ E+ K+EYR Sbjct: 56 GAKGPRGPKTIIVKHRLEGVFICKGQQEALVTKNFFPGESVYNEKRMSVE-ENGEKIEYR 114
>FBRL_LEIMA (P35549) Fibrillarin| Length = 297 Score = 63.2 bits (152), Expect = 3e-10 Identities = 36/58 (62%), Positives = 41/58 (70%), Gaps = 4/58 (6%) Frame = +1 Query: 289 GAKVVVVPHK-HDGVFIAKAKEDALCTKNMVAGESVYGEKRV---SVQNEDSSKVEYR 450 GAKV+V PH H GVFI+KAK D+LCT NMV G SVYGEKR+ + Q D K EYR Sbjct: 56 GAKVIVEPHMLHPGVFISKAKTDSLCTLNMVPGISVYGEKRIELGATQGGDDKK-EYR 112
>FBRL_ENCCU (Q8SR42) Fibrillarin| Length = 291 Score = 56.6 bits (135), Expect = 3e-08 Identities = 31/53 (58%), Positives = 39/53 (73%), Gaps = 1/53 (1%) Frame = +1 Query: 295 KVVVVPH-KHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 KV+V PH + GV+I++ KED L T+N+V G SVYGEKRV+V E KVEYR Sbjct: 46 KVLVEPHPRFPGVYISRGKEDLLLTRNLVPGVSVYGEKRVAVDLE-GMKVEYR 97
>FLPA_NANEQ (Q74N89) Fibrillarin-like pre-rRNA-processing protein| Length = 232 Score = 34.3 bits (77), Expect = 0.15 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = +1 Query: 298 VVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNED 429 + V PHK +GV+I K L TKN+V G+ VY E+ + E+ Sbjct: 7 IKVKPHKLEGVYIGNNK--FLLTKNLVKGQKVYTERIFKSKGEE 48
>FLPA_PYRAB (Q9V2L5) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 33.5 bits (75), Expect = 0.26 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Frame = +1 Query: 298 VVVVPHKHDGVFIAKAKE--DALCTKNMVAGESVYGEKRVSVQNED 429 V V HK GV+I + + + TKN+V G+ VYGE+ + + E+ Sbjct: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEE 47
>FLPA_PYRFU (Q8U4M2) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 33.1 bits (74), Expect = 0.33 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Frame = +1 Query: 298 VVVVPHKHDGVFIAKAKE--DALCTKNMVAGESVYGEKRVSVQNED 429 V V HK GV++ + + + TKN+V G+ VYGE+ + + E+ Sbjct: 2 VEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEE 47
>FLPA_PYRAE (Q8ZTI9) Fibrillarin-like pre-rRNA-processing protein| Length = 235 Score = 32.7 bits (73), Expect = 0.44 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%) Frame = +1 Query: 298 VVVVPH-KHDGVFIAKAKE--DALCTKNMVAGESVYGEKRV 411 V V PH +H GV++ K ++ + + TKN+ G VYGE+ + Sbjct: 6 VEVKPHERHYGVYVVKFEDGTERIATKNLTPGRRVYGERLI 46
>FLPA_PYRKO (Q5JFN1) Fibrillarin-like pre-rRNA-processing protein| Length = 226 Score = 32.7 bits (73), Expect = 0.44 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +1 Query: 304 VVPHKHDGVFIAKAKE--DALCTKNMVAGESVYGEKRVSVQNED 429 V H+ GV+I + + + TKN+V G+ VYGE+ V + E+ Sbjct: 3 VKKHRFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVVKFEGEE 46
>FLPA_PYRHO (O57811) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 32.3 bits (72), Expect = 0.57 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +1 Query: 298 VVVVPHKHDGVF--IAKAKEDALCTKNMVAGESVYGEKRVSVQNED 429 V V HK GV+ I + + TKN+V G+ VYGE+ + + E+ Sbjct: 2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEGEE 47
>FLPA_SULTO (Q971W2) Fibrillarin-like pre-rRNA-processing protein| Length = 233 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +1 Query: 358 LCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 LCTKN+ G SVYGE+ V+ VEYR Sbjct: 27 LCTKNLAPGFSVYGERLFKVEG-----VEYR 52
>FLPA_AERPE (Q9Y9U3) Fibrillarin-like pre-rRNA-processing protein| Length = 233 Score = 30.8 bits (68), Expect = 1.7 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%) Frame = +1 Query: 301 VVVPHKHD---GVFIAKAKEDAL--CTKNMVAGESVYGEKRVSVQNED 429 VV +HD GV++ + ++ +L TKN+V G+ VYGE+ E+ Sbjct: 4 VVSVREHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGERIFRYNGEE 51
>FLPA_METMA (O53133) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 30.4 bits (67), Expect = 2.2 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +1 Query: 322 DGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNED 429 +G+F + L T N+ G+ VYGEK +SV+ ++ Sbjct: 9 EGIFEVTKDKKQLSTLNLDPGKVVYGEKLISVEGDE 44
>FLPA_METAC (Q8TTT4) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 322 DGVFIAKAKEDALCTKNMVAGESVYGEKRVSVQNED 429 +G+F + L T N+ G+ VYGEK +SV+ + Sbjct: 9 EGIFEIMKDKRQLATLNLDPGKVVYGEKLISVEGAE 44
>FLPA_SULAC (Q9P9M0) Fibrillarin-like pre-rRNA-processing protein| Length = 231 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 358 LCTKNMVAGESVYGEKRVSVQNEDSSKVEYR 450 LCTKN+ G +VYGE+ + VEYR Sbjct: 27 LCTKNLSPGHNVYGERLIKY-----GGVEYR 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.131 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,785,362 Number of Sequences: 219361 Number of extensions: 333831 Number of successful extensions: 771 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 759 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 769 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
