ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62d03 |
|---|---|
| Clone Library Name | barley_pub |
>YEZ3_YEAST (P32656) Hypothetical 26.3 kDa protein in RAD4-CHD1 intergenic| region Length = 232 Score = 54.3 bits (129), Expect = 1e-07 Identities = 25/59 (42%), Positives = 34/59 (57%) Frame = +1 Query: 199 LWVFGYGSLIWNPGFDFDDKILGFIKGYKRTFNLACIDHRGTPQHPARTCTLESEDEAI 375 +WV GYGSLI+ P + +I I G+ R F + DHRGTP +P R TL ++ I Sbjct: 8 IWVLGYGSLIYKPPSHYTHRIPAIIHGFARRFWQSSTDHRGTPANPGRVATLIPYEDII 66
>CHAC_ECOLI (P39163) Cation transport protein chaC| Length = 231 Score = 54.3 bits (129), Expect = 1e-07 Identities = 25/65 (38%), Positives = 34/65 (52%) Frame = +1 Query: 199 LWVFGYGSLIWNPGFDFDDKILGFIKGYKRTFNLACIDHRGTPQHPARTCTLESEDEAIC 378 +W+FGYGSL+WNP +F + G + G+ R F L RGT P R L+ Sbjct: 47 VWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTT- 105 Query: 379 WGIAY 393 G+AY Sbjct: 106 -GVAY 109
>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 36.2 bits (82), Expect = 0.042 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Frame = +3 Query: 33 VHRTKKPPEPASGARATRARPHVPPTARDP-----KSPDEATTILSALASAGEKQKRQDG 197 +H KPP A+ A A A P PP P + +E + L+A A E++ RQ+ Sbjct: 1336 LHVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSARQKLEETSACLAAALQAVEEKIRQED 1395 Query: 198 AVGLR 212 A G R Sbjct: 1396 AQGPR 1400
>RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (hHR23A)| Length = 363 Score = 32.3 bits (72), Expect = 0.61 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%) Frame = +3 Query: 42 TKKPPEPASGARATRARPHVPPTARDPKSPDEAT-------TILSALASAGEKQKRQDGA 200 T PP P SG H PP AR+ KSP E + ++ ++ S+G + +D A Sbjct: 101 TSFPPAPTSGMS------HPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAA 154
>RD23A_MOUSE (P54726) UV excision repair protein RAD23 homolog A (mHR23A)| Length = 363 Score = 32.0 bits (71), Expect = 0.79 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Frame = +3 Query: 42 TKKPPEPASGARATRARPHVPPTARDPKSPDEATT-------ILSALASAGEKQKRQDGA 200 T PP ASG H PPT+R+ KSP E +T I ++ S+G + +D A Sbjct: 101 TPFPPVLASGMS------HPPPTSREDKSPSEESTTTTSPESISGSVPSSGSSGREEDAA 154
>LEXA_BORPE (Q7VRY0) LexA repressor (EC 3.4.21.88)| Length = 216 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Frame = +3 Query: 42 TKKPPEPASGARATRARPHVPPTARDP------KSPDEATTILSALASAGEKQKRQDGAV 203 T++ E R T AR PPT + +SP+ A L ALA G + + Sbjct: 6 TERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASR 65 Query: 204 GLRIRVPD 227 G+R++VPD Sbjct: 66 GIRLKVPD 73
>LEXA_BORPA (Q7W0T5) LexA repressor (EC 3.4.21.88)| Length = 216 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Frame = +3 Query: 42 TKKPPEPASGARATRARPHVPPTARDP------KSPDEATTILSALASAGEKQKRQDGAV 203 T++ E R T AR PPT + +SP+ A L ALA G + + Sbjct: 6 TERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASR 65 Query: 204 GLRIRVPD 227 G+R++VPD Sbjct: 66 GIRLKVPD 73
>LEXA_BORBR (Q7WCK0) LexA repressor (EC 3.4.21.88)| Length = 216 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Frame = +3 Query: 42 TKKPPEPASGARATRARPHVPPTARDP------KSPDEATTILSALASAGEKQKRQDGAV 203 T++ E R T AR PPT + +SP+ A L ALA G + + Sbjct: 6 TERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASR 65 Query: 204 GLRIRVPD 227 G+R++VPD Sbjct: 66 GIRLKVPD 73
>GATA3_MOUSE (P23772) Trans-acting T-cell-specific transcription factor GATA-3| (GATA-binding factor 3) Length = 443 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Frame = +3 Query: 51 PPEPASGARATRARPHV---PPTARDPKSPDEATTILSALASAGEKQKRQDGAVGLRIRV 221 PP +S A + PH+ PPT SPD + LS SAG ++ + + ++++ Sbjct: 133 PPASSSSLAAGHSSPHLFTFPPTPPKDVSPDPS---LSTPGSAGSARQDEKECLKYQVQL 189 Query: 222 PD 227 PD Sbjct: 190 PD 191
>BRCA1_RAT (O54952) Breast cancer type 1 susceptibility protein homolog| Length = 1817 Score = 30.8 bits (68), Expect = 1.8 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%) Frame = +3 Query: 30 DVHRTKKPPEPASGARATRARPHVPPTARDPKSPDEATTILSALASAGEKQKRQDGAVGL 209 +VH +K P + ++TR + P +R+P P A + + S+ E +K Sbjct: 594 NVHSSKAPKKNRLRRKSTRCVLPLEPISRNPSPPTCAELQIESCGSSEETKKNNSNQTPA 653 Query: 210 -RIRVP----DLEPRLRFRRQDPRIH 272 IR P D EP ++ +P H Sbjct: 654 GHIREPQLIEDTEPAADAKKNEPNEH 679
>IF2_RHIME (Q92SW4) Translation initiation factor IF-2| Length = 889 Score = 30.8 bits (68), Expect = 1.8 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Frame = +3 Query: 3 ASRPPAR*RDVHRTKKPPEPASGAR--ATRARPHVPPTARDPKSPDEATTILSALASAGE 176 A+RPP + PA G R TR +P A P +PD A + E Sbjct: 167 AARPPVEAEKTEEKVEAASPAVGERRAETRPQPGRAAPAATPAAPDGAALRGRRGTESEE 226 Query: 177 KQKRQDGAVGLRIRVPDLEP 236 ++R+ GA R +V EP Sbjct: 227 DERRRSGAGAPRGKVVRPEP 246
>P53_CERAE (P13481) Cellular tumor antigen p53 (Tumor suppressor p53)| Length = 393 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +3 Query: 54 PEPASGARATRARPHVPPTARDPKSPDEATTILSALASAGEKQKRQDGAVGLRI 215 P P R + A PH+ PT P A L+S+ QK G+ G R+ Sbjct: 58 PGPDEAPRMSEAAPHMAPTPAAPTPAAPAPAPSWPLSSSVPSQKTYHGSYGFRL 111
>AREA_EMENI (P17429) Nitrogen regulatory protein areA| Length = 876 Score = 30.0 bits (66), Expect = 3.0 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = +3 Query: 54 PEPASGARATRARPHVPPTARDPKSPDEATTILSALASAGEKQKRQD--GAVGLRIRVPD 227 P P++ + +P AR +S EAT + ++ + Q+R+ G V R+R Sbjct: 200 PSPSTTKASEATTGAIPIKARRDQSASEATPVPASFPHPAQDQRRESEFGYVPRRVRKTS 259 Query: 228 LEPRLRFRRQDP 263 ++ R F Q P Sbjct: 260 IDERQFFNLQIP 271
>SYFB_NOCFA (Q5YYH6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 834 Score = 29.6 bits (65), Expect = 3.9 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +1 Query: 223 LIWNPGFDFDDKILGFIKGYKRTFNLACIDHRGTPQHPARTCTLESEDEAI 375 L W+PG + + G + GY + A ++ G P ARTC LE + +A+ Sbjct: 681 LPWHPGRCAELVVEGRVVGYAGELHPAVLERSGLP---ARTCALELDLDAL 728
>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)| Length = 1601 Score = 29.6 bits (65), Expect = 3.9 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Frame = +3 Query: 12 PPAR*RDVHRTKKPPEPASGARATRARPHVPPTARDPKSPDEATTILSALAS----AGEK 179 PP+ R + K P PA+ A+ T +P + PT D K+P + + S A E Sbjct: 1214 PPSSPRVITPPKTSP-PANAAKVTPLKPVLTPTQVDKKTPSPEKRTAAQMGSHSPTASEN 1272 Query: 180 QKRQDGAVGL 209 + + G G+ Sbjct: 1273 KSPKGGPAGV 1282
>SF3A1_MOUSE (Q8K4Z5) Splicing factor 3 subunit 1 (SF3a120)| Length = 791 Score = 29.6 bits (65), Expect = 3.9 Identities = 20/83 (24%), Positives = 34/83 (40%) Frame = +3 Query: 3 ASRPPAR*RDVHRTKKPPEPASGARATRARPHVPPTARDPKSPDEATTILSALASAGEKQ 182 A RPP PP A A H PP D + P + +L E Sbjct: 638 APRPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMED-EPPSKKLKTEDSLMPEEEFL 696 Query: 183 KRQDGAVGLRIRVPDLEPRLRFR 251 +R G V ++++VP+++ + ++ Sbjct: 697 RRNKGPVSIKVQVPNMQDKTEWK 719
>VGLC_HHV2H (Q89730) Glycoprotein C precursor| Length = 480 Score = 29.6 bits (65), Expect = 3.9 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Frame = +3 Query: 42 TKKPPEP--ASGARATRARPHVPPTARDPKSPDEATTILSALASAGEKQKRQDGAVGLRI 215 T PP+P A+ ++A+ A+P PP PK+ E + + R V +R Sbjct: 59 TPTPPQPRKATKSKASTAKPAPPPKTGPPKTSSEPVR-----CNRHDPLARYGSRVQIRC 113 Query: 216 RVPDLEPRLRFRRQDPRIHQGLQADL 293 R P+ R FR Q R A++ Sbjct: 114 RFPN-STRTEFRLQIWRYATATDAEI 138
>TMAP1_HUMAN (P84157) Transmembrane anchor protein 1| Length = 204 Score = 29.6 bits (65), Expect = 3.9 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%) Frame = +3 Query: 45 KKPPEPASGARATRA----RPHVPPTARDPKSPDE 137 + PPEPA A AT A RP P A P P+E Sbjct: 39 RAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEE 73
>MTF2_PONPY (Q5R7T9) Metal-response element-binding transcription factor 2| (Metal-regulatory transcription factor 2) Length = 593 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = +3 Query: 90 RPHVPPTARDPKSPD-----EATTILSALASAGEKQKRQDGAVGLRIRVPDLEPRLRFRR 254 R H A PKS EA + +G++ K++ GLRIRVP + P + F+ Sbjct: 302 RLHPGELADTPKSERYEHVLEALNDYKTMFMSGKEIKKKKHLFGLRIRVPPVPPNVAFKA 361 Query: 255 Q 257 + Sbjct: 362 E 362
>MTF2_MOUSE (Q02395) Metal-response element-binding transcription factor 2| (Zinc-regulated factor 1) (ZiRF1) (Metal-response element DNA-binding protein M96) (Metal-regulatory transcription factor 2) (PCL2) Length = 593 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = +3 Query: 90 RPHVPPTARDPKSPD-----EATTILSALASAGEKQKRQDGAVGLRIRVPDLEPRLRFRR 254 R H A PKS EA + +G++ K++ GLRIRVP + P + F+ Sbjct: 302 RLHPGELADTPKSERYEHVLEALNDYKTMFMSGKEIKKKKHLFGLRIRVPPVPPNVAFKA 361 Query: 255 Q 257 + Sbjct: 362 E 362
>MTF2_HUMAN (Q9Y483) Metal-response element-binding transcription factor 2| (Metal-response element DNA-binding protein M96) (Metal-regulatory transcription factor 2) (PCL2) Length = 593 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = +3 Query: 90 RPHVPPTARDPKSPD-----EATTILSALASAGEKQKRQDGAVGLRIRVPDLEPRLRFRR 254 R H A PKS EA + +G++ K++ GLRIRVP + P + F+ Sbjct: 302 RLHPGELADTPKSERYEHVLEALNDYKTMFMSGKEIKKKKHLFGLRIRVPPVPPNVAFKA 361 Query: 255 Q 257 + Sbjct: 362 E 362
>GATA3_HUMAN (P23771) Trans-acting T-cell-specific transcription factor GATA-3| (GATA-binding factor 3) Length = 443 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +3 Query: 51 PPEPASGARATRARPHV---PPTARDPKSPDEATTILSALASAGEKQKRQDGAVGLRIRV 221 PP +S A PH+ PPT SPD + LS SAG ++ + + ++ + Sbjct: 134 PPASSSSLSGGHASPHLFTFPPTPPKDVSPDPS---LSTPGSAGSARQDEKECLKYQVPL 190 Query: 222 PD 227 PD Sbjct: 191 PD 192
>CASP_PONPY (Q5R8V1) Protein CASP| Length = 678 Score = 29.3 bits (64), Expect = 5.1 Identities = 28/97 (28%), Positives = 41/97 (42%) Frame = +3 Query: 9 RPPAR*RDVHRTKKPPEPASGARATRARPHVPPTARDPKSPDEATTILSALASAGEKQKR 188 RP A HR +K PEP A A P P + P+ + ++LS ++S E+ Sbjct: 457 RPDAEGAAEHRLEKIPEPIKEATALFYGPTAPASGALPEG--QVDSLLSIISSQRER--- 511 Query: 189 QDGAVGLRIRVPDLEPRLRFRRQDPRIHQGLQADLQS 299 R R +LE R + Q LQ++L S Sbjct: 512 ------FRARNQELEAENRLAQ---HTLQALQSELDS 539
>CASP_HUMAN (Q13948) Protein CASP| Length = 678 Score = 29.3 bits (64), Expect = 5.1 Identities = 28/97 (28%), Positives = 41/97 (42%) Frame = +3 Query: 9 RPPAR*RDVHRTKKPPEPASGARATRARPHVPPTARDPKSPDEATTILSALASAGEKQKR 188 RP A HR +K PEP A A P P + P+ + ++LS ++S E+ Sbjct: 457 RPDAEGAAEHRLEKIPEPIKEATALFYGPAAPASGALPEG--QVDSLLSIISSQRER--- 511 Query: 189 QDGAVGLRIRVPDLEPRLRFRRQDPRIHQGLQADLQS 299 R R +LE R + Q LQ++L S Sbjct: 512 ------FRARNQELEAENRLAQ---HTLQALQSELDS 539
>TACC2_HUMAN (O95359) Transforming acidic coiled-coil-containing protein 2 (Anti| Zuai-1) (AZU-1) Length = 1026 Score = 29.3 bits (64), Expect = 5.1 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Frame = +3 Query: 39 RTKKPPEPASGARATRARP-HVPPTARDPKSPDEATTILSALASAGE---KQKRQDGAVG 206 RTKKP P+ + T +P PP + PDE + + S A E + + +G Sbjct: 204 RTKKPRPPSLKKKQTTKKPTETPPVKETQQEPDEESLVPSGENLASETKTESAKTEGPSP 263 Query: 207 LRIRVPDLEP 236 + LEP Sbjct: 264 ALLEETPLEP 273
>SPT2_YEAST (P06843) Protein SPT2 (Negative regulator of Ty transcription)| Length = 333 Score = 29.3 bits (64), Expect = 5.1 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 13/87 (14%) Frame = +3 Query: 45 KKPPEPASGARATRARPHV-PPTARDPKSPDEATT---ILSALASAGEKQKRQDGAVGLR 212 K+PP+ S T+ RPH P + K P + + L ++S G K D ++ Sbjct: 139 KQPPKVKSSEPVTKERPHFNKPGFKSSKRPQKKASPGATLRGVSSGGNSIKSSDSPKPVK 198 Query: 213 IRVPD---------LEPRLRFRRQDPR 266 + +P L+ +L R+Q R Sbjct: 199 LNLPTNGFAQPNRRLKEKLESRKQKSR 225
>DNMT1_HUMAN (P26358) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1)| (DNA methyltransferase HsaI) (DNA MTase HsaI) (MCMT) (M.HsaI) Length = 1616 Score = 29.3 bits (64), Expect = 5.1 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%) Frame = +3 Query: 6 SRPPAR*RDVHRTKKPPEPASGARATR-------ARPHVPPTARDPKSPDEATTILSALA 164 +R AR + PP+P S R R A+P P+ R + TTI S A Sbjct: 113 ARSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFA 172 Query: 165 SAGEKQKRQD 194 K+K Q+ Sbjct: 173 KGPAKRKPQE 182
>CAPU_DROME (Q24120) Protein cappuccino| Length = 1059 Score = 29.3 bits (64), Expect = 5.1 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +3 Query: 114 RDPKSPDEATTILSALASAGEKQKRQDGAVGLRIRVPDLEP 236 +D KS + TT+L + Q+R++G L IR+P EP Sbjct: 853 KDVKSKESHTTLLHFIVRTYIAQRRKEGVHPLEIRLPIPEP 893
>Y2297_STRCO (Q9L016) UPF0246 protein SCO2297| Length = 260 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = -1 Query: 393 ISNSPAYGFIFGFKGASPGRMLRRASMVNASEIEGPLVALDESEDLVVEIEAGVPDQG 220 + ++P + F A+ GR++R + + + EGP ++ DL E+EA P +G Sbjct: 190 VLHAPTRKVVSHFNKATKGRIVR-SLLATGTAPEGPAELVEALRDLGYEVEAEAPAKG 246
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing| mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Frame = +3 Query: 12 PPAR*RDVHRTKKPPEPASGARATRARPHVPPTARD-----PKSPDEATTILSALASAGE 176 PP R R P PAS A P PP+ PK E T + GE Sbjct: 782 PPTPPRRTSRAPIEPTPASEATGAPTPPPAPPSPSAPPPVVPKEEKEEETAAAPPVEEGE 841 Query: 177 KQK 185 +QK Sbjct: 842 EQK 844
>NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)| Length = 1000 Score = 28.5 bits (62), Expect = 8.7 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Frame = +3 Query: 60 PASGARATRARPHVPPTAR-----DPKSPDEA--TTILSALASAGEKQKRQDGAVGLRIR 218 PA+ A TRA PH PT R P SP A +AL A + ++ + LR R Sbjct: 3 PAARAHPTRAPPHALPTPRAPPRAPPPSPRSARRRPFPAALPGAASARSPREALLSLRER 62 Query: 219 V 221 + Sbjct: 63 L 63
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/42 (38%), Positives = 16/42 (38%) Frame = +3 Query: 6 SRPPAR*RDVHRTKKPPEPASGARATRARPHVPPTARDPKSP 131 S PPAR R PP P R P PP R P P Sbjct: 563 SPPPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPP 604
>FOXL1_MOUSE (Q64731) Forkhead box protein L1 (Forkhead-related protein FKHL11)| (Transcription factor FKH-6) Length = 337 Score = 28.5 bits (62), Expect = 8.7 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Frame = +3 Query: 39 RTKKPPEPASG---ARATRARPHVPPTARDPKSPDEATTILSALASAGEKQKRQDGAVG 206 R K+ P+PA+G A+ TR P D SPD T L A + Q AVG Sbjct: 140 RRKRKPKPAAGSPEAKRTRVEPPESEVGCDVGSPDLVATALPTRA----PDRSQSPAVG 194
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 28.5 bits (62), Expect = 8.7 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Frame = +3 Query: 3 ASRPPAR*RDVHRTKKPPEPASGARATRARPHVPPTARDP---KSPDEATT 146 AS+P + + T P+PA RA +A PP A+ P ++P TT Sbjct: 3828 ASQPAGKPQPGPTTAPGPQPAGPPRAEQASSSKPPAAKAPQQGRAPQAQTT 3878
>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 899 Score = 28.5 bits (62), Expect = 8.7 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 8/84 (9%) Frame = +3 Query: 6 SRPPAR*RDVHRTKKPPEPASGARATRARPHVPPTARDPKSPDEATTIL--------SAL 161 S PA V R K PP S T P PP + SP+ A + S + Sbjct: 524 SSTPALHLTVQRLKLPPPQGSSESCTVNIPQQPPGSLSIASPNTAFIPIHNPGSFPGSPV 583 Query: 162 ASAGEKQKRQDGAVGLRIRVPDLE 233 A+ K VGL VP +E Sbjct: 584 ATTDPITKSASQVVGLNQMVPQIE 607
>SF3A1_HUMAN (Q15459) Splicing factor 3 subunit 1 (Spliceosome-associated| protein 114) (SAP 114) (SF3a120) Length = 793 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/83 (24%), Positives = 34/83 (40%) Frame = +3 Query: 3 ASRPPAR*RDVHRTKKPPEPASGARATRARPHVPPTARDPKSPDEATTILSALASAGEKQ 182 A RPP PP A A H PP D + + T +L E Sbjct: 640 APRPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPTSKKLKTE-DSLMPEEEFL 698 Query: 183 KRQDGAVGLRIRVPDLEPRLRFR 251 +R G V ++++VP+++ + ++ Sbjct: 699 RRNKGPVSIKVQVPNMQDKTEWK 721
>IRX1_MOUSE (P81068) Iroquois-class homeodomain protein IRX-1 (Iroquois| homeobox protein 1) (Homeodomain protein IRXA1) Length = 480 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/46 (41%), Positives = 21/46 (45%) Frame = +3 Query: 72 ARATRARPHVPPTARDPKSPDEATTILSALASAGEKQKRQDGAVGL 209 A A RAR P +ARD SP SA E K QD +GL Sbjct: 249 AEAPRARVRPPASARDQSSP----------LSAAETLKSQDSPLGL 284 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,675,012 Number of Sequences: 219361 Number of extensions: 1274877 Number of successful extensions: 5497 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 5125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5485 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
