ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62c12 |
|---|---|
| Clone Library Name | barley_pub |
>EFP_SYNEL (Q8DJD3) Elongation factor P (EF-P)| Length = 185 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/52 (40%), Positives = 31/52 (59%) Frame = -3 Query: 246 RAGLDVLLDVAVHRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHRHG 91 R G+ + LD AV R+V LHV+PG+ VR L ++ + V++RT R G Sbjct: 8 RPGVSIELDGAVWRVV-EFLHVKPGKGSAFVRTKLKNVQTGN-VIERTFRAG 57
>CAPP_BURPS (Q63W75) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 32.7 bits (73), Expect = 0.45 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 1/108 (0%) Frame = +1 Query: 4 RPSLTEANDQTNPRLRAHEEREREISEVAAMAMRALYNEIRAMKVREVPAYLKP-RLTWA 180 RP P+ R E+++R + E R L + +R + V ++ R T Sbjct: 44 RPLAPTNAASAKPQGRTREDKDRPLFEDIRYLGRLLGDVVREQEGDAVFDVVETIRQTAV 103 Query: 181 NVKKSTDQAVDRYIEKYIETSSPEPIFHICFGGMAFSYLVGLPQERRH 324 ++ D+A + +EK + +PE + FS+L + ++R H Sbjct: 104 KFRREDDKAAAQTLEKMLRKLTPEQTVSVVRAFSYFSHLANIAEDRHH 151
>CAPP_BURMA (Q62LC1) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 32.7 bits (73), Expect = 0.45 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 1/108 (0%) Frame = +1 Query: 4 RPSLTEANDQTNPRLRAHEEREREISEVAAMAMRALYNEIRAMKVREVPAYLKP-RLTWA 180 RP P+ R E+++R + E R L + +R + V ++ R T Sbjct: 44 RPLAPTNAASAKPQGRTREDKDRPLFEDIRYLGRLLGDVVREQEGDAVFDVVETIRQTAV 103 Query: 181 NVKKSTDQAVDRYIEKYIETSSPEPIFHICFGGMAFSYLVGLPQERRH 324 ++ D+A + +EK + +PE + FS+L + ++R H Sbjct: 104 KFRREDDKAAAQTLEKMLRKLTPEQTVSVVRAFSYFSHLANIAEDRHH 151
>Y323_BUCAI (P57408) Hypothetical UPF0053 protein BU323| Length = 521 Score = 32.7 bits (73), Expect = 0.45 Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 2/110 (1%) Frame = +1 Query: 19 EANDQTNPRLRAHEEREREISEVAAMAMRALYNEIRAMKVREVPAYLKPR--LTWANVKK 192 E N Q +++ +E E E R + N + + R + + + PR ++W N +K Sbjct: 270 EINSQKTDSIQSSKEMETFKDEE-----RYMINGVLTLAGRSIRSIMTPRSNISWVNTEK 324 Query: 193 STDQAVDRYIEKYIETSSPEPIFHICFGGMAFSYLVGLPQERRHLEHLEK 342 +TD+ + ++ +P +F +C G + ++G+ + + L +EK Sbjct: 325 NTDEIRMQLLD------TPHSLFPVCKGEL--DEIIGIVRAKELLVAIEK 366
>RBSD_ECOLI (P04982) High affinity ribose transport protein rbsD| Length = 139 Score = 31.6 bits (70), Expect = 0.99 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 9/42 (21%) Frame = +1 Query: 322 HLEHLEKHGGHQIRIRL---------AQESLSTVDSGWCSPF 420 HLE L+KH G+ I IR ES + + SG CSP+ Sbjct: 87 HLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVIRSGECSPY 128
>RBSD_ECO57 (Q8XAW8) High affinity ribose transport protein rbsD| Length = 139 Score = 31.6 bits (70), Expect = 0.99 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 9/42 (21%) Frame = +1 Query: 322 HLEHLEKHGGHQIRIRL---------AQESLSTVDSGWCSPF 420 HLE L+KH G+ I IR ES + + SG CSP+ Sbjct: 87 HLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVIRSGECSPY 128
>EFP_PROMA (Q7VEI7) Elongation factor P (EF-P)| Length = 186 Score = 31.6 bits (70), Expect = 0.99 Identities = 22/52 (42%), Positives = 30/52 (57%) Frame = -3 Query: 246 RAGLDVLLDVAVHRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHRHG 91 R G + LD AV R+V LHV+PG+ VR L + +A VV++T R G Sbjct: 8 RTGTTIELDGAVWRVV-EFLHVKPGKGSAFVRTKLKAV-QAGNVVEKTFRAG 57
>EFP_SYNY3 (Q55119) Elongation factor P (EF-P)| Length = 187 Score = 31.6 bits (70), Expect = 0.99 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = -3 Query: 246 RAGLDVLLDVAVHRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHRHG 91 R G +++D AV ++V LHV+PG+ VR L + + VV++T R G Sbjct: 8 RTGTSIVMDGAVWKVV-EFLHVKPGKGSAFVRTKLKSVQTGN-VVEKTFRAG 57
>EFP_LACPL (Q88WN1) Elongation factor P (EF-P)| Length = 185 Score = 31.6 bits (70), Expect = 0.99 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = -3 Query: 240 GLDVLLDVAVHRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHRHGRDLGDLP 70 GL + +D A+ R+V HV+PG+ G VR L +L R V +T R G + P Sbjct: 10 GLTIEVDNAIWRIV-EFQHVKPGKGGAFVRSKLKNL-RTGAVQDKTFRAGARMEQAP 64
>EFP_PROMM (Q7V9B9) Elongation factor P (EF-P)| Length = 186 Score = 30.8 bits (68), Expect = 1.7 Identities = 21/55 (38%), Positives = 30/55 (54%) Frame = -3 Query: 246 RAGLDVLLDVAVHRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHRHGRDL 82 R G + LD +V R+V LHV+PG+ VR L + + VV++T R G L Sbjct: 8 RTGTSIELDGSVWRVV-EFLHVKPGKGSAFVRTKLKAVQSGN-VVEKTFRAGEML 60
>ASPM_CANFA (P62286) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3452 Score = 30.4 bits (67), Expect = 2.2 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = -3 Query: 210 HRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHR 97 ++L +++ ++ G G++ RRHL +H A ++QR R Sbjct: 2229 NKLRHSIIRIQAGFRGMKARRHLKSMHLAATLIQRRFR 2266
>ACOR_RALEU (P28614) Acetoin catabolism regulatory protein| Length = 668 Score = 30.4 bits (67), Expect = 2.2 Identities = 12/40 (30%), Positives = 23/40 (57%) Frame = +1 Query: 13 LTEANDQTNPRLRAHEEREREISEVAAMAMRALYNEIRAM 132 + EA PRLR H+ER + + +A +++LY ++ + Sbjct: 53 MQEARILPQPRLREHQERIDDFARIARHGLQSLYGQVAGL 92
>EFP_SYNPX (Q7UA67) Elongation factor P (EF-P)| Length = 187 Score = 30.4 bits (67), Expect = 2.2 Identities = 21/55 (38%), Positives = 30/55 (54%) Frame = -3 Query: 246 RAGLDVLLDVAVHRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHRHGRDL 82 R G + +D AV R+V LHV+PG+ VR L + + VV++T R G L Sbjct: 8 RTGTTIEIDGAVWRVV-EFLHVKPGKGSAFVRSKLKAVKTGN-VVEKTFRAGEML 60
>EFP_SYNP7 (Q54760) Elongation factor P (EF-P)| Length = 185 Score = 30.4 bits (67), Expect = 2.2 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = -3 Query: 246 RAGLDVLLDVAVHRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHRHG 91 R G + +D AV R+V LHV+PG+ VR L + + VV++T R G Sbjct: 8 RTGTTIEIDGAVWRVV-EFLHVKPGKGSAFVRTKLKNAKTGN-VVEKTFRAG 57
>EFP_SYNP6 (Q5N1T5) Elongation factor P (EF-P)| Length = 185 Score = 30.4 bits (67), Expect = 2.2 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = -3 Query: 246 RAGLDVLLDVAVHRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHRHG 91 R G + +D AV R+V LHV+PG+ VR L + + VV++T R G Sbjct: 8 RTGTTIEIDGAVWRVV-EFLHVKPGKGSAFVRTKLKNAKTGN-VVEKTFRAG 57
>ASPM_SAIBB (P62296) Abnormal spindle-like microcephaly-associated protein| homolog Length = 3469 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/38 (34%), Positives = 25/38 (65%) Frame = -3 Query: 210 HRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHR 97 ++L +++H++ G++VRRHL +H A ++QR R Sbjct: 2228 NKLRHSVIHIQAIFRGMKVRRHLKTMHIAATLIQRRFR 2265
>KCNH6_RAT (O54853) Potassium voltage-gated channel subfamily H member 6| (Voltage-gated potassium channel subunit Kv11.2) (Ether-a-go-go-related gene potassium channel 2) (Ether-a-go-go-related protein 2) (Eag-related protein 2) Length = 950 Score = 30.0 bits (66), Expect = 2.9 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 12/58 (20%) Frame = -3 Query: 252 LRRAGLDVLLDVAVHRLVG--------ALLHVRPGEAGLEVRR----HLAHLHRADLV 115 + R +++L D V ++G A LH RPG++ +VR L +HRADL+ Sbjct: 634 ISRGSIEILRDDVVVAILGKNDIFGEPASLHARPGKSSADVRALTYCDLHKIHRADLL 691
>CJ047_HUMAN (Q86WR7) Protein C10orf47| Length = 435 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +3 Query: 3 PPLPHRSQRPNEP*TPSARGAREGD 77 P P R RP E TP+ARG R GD Sbjct: 213 PTSPFREGRPGEWRTPAARGPRSGD 237
>EFP_PROMP (Q7V3P5) Elongation factor P (EF-P)| Length = 186 Score = 29.6 bits (65), Expect = 3.8 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -3 Query: 246 RAGLDVLLDVAVHRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHRHGRDL 82 R G + +D V R+V LHV+PG+ VR L + + VV++T R G + Sbjct: 8 RTGTTIEIDGQVWRVV-EFLHVKPGKGSAFVRTKLKSVRNGN-VVEKTFRAGESV 60
>DYNA_DROME (P13496) 150 kDa dynein-associated polypeptide (DP-150) (DAP-150)| (Protein glued) Length = 1265 Score = 28.9 bits (63), Expect = 6.4 Identities = 20/72 (27%), Positives = 38/72 (52%) Frame = +1 Query: 28 DQTNPRLRAHEEREREISEVAAMAMRALYNEIRAMKVREVPAYLKPRLTWANVKKSTDQA 207 +Q N E RE ++ ++ +A + NE+ M++R+ A K + ++ + A Sbjct: 977 EQKNVLAATLENREADVKQLK-VAAKMKQNELSEMQIRKDLAEKKLSV----LQNEYEHA 1031 Query: 208 VDRYIEKYIETS 243 VD++ +KY ETS Sbjct: 1032 VDKWKQKYEETS 1043
>ASPM_SAGLB (P62295) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 1527 Score = 28.9 bits (63), Expect = 6.4 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -3 Query: 210 HRLVGALLHVRPGEAGLEVRRHLAHLHRA 124 H L ++ ++ G+ +RRH+ H+HRA Sbjct: 684 HSLKKTVIKIQAVYRGIRIRRHIQHMHRA 712
>CBIO2_METTH (O27739) Putative cobalt import ATP-binding protein cbiO 2| Length = 311 Score = 28.9 bits (63), Expect = 6.4 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%) Frame = -3 Query: 270 ADMEDRLRRAGLDVLLDVAVHRLVGALLHVRPGEA--------GLEVRRHLAHL 133 AD+ +RLR AG +V + + V LLH+ G+A G E + L HL Sbjct: 242 ADLLNRLRMAGFEVDVKLTVEETYHELLHLLGGDAYHRLLHFLGEEKQHRLIHL 295
>PAL3_PHAVU (P19143) Phenylalanine ammonia-lyase class 3 (EC 4.3.1.5)| (Phenylalanine ammonia-lyase class III) Length = 710 Score = 28.9 bits (63), Expect = 6.4 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +1 Query: 280 MAFSYLVGLPQ--ERRHLEHLEKHGGHQIRIRLAQESLSTVDSGWCSPFFF 426 M+ +YLV L Q + RHLE + K+ R+A ++L+T D +PF F Sbjct: 506 MSSTYLVALCQAIDLRHLEEIFKNTVKNTVSRVALKTLTTEDKEETNPFRF 556
>ASPM_AOTVO (P62283) Abnormal spindle-like microcephaly-associated protein| homolog Length = 3473 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = -3 Query: 210 HRLVGALLHVRPGEAGLEVRRHLAHLHRADLVVQRTHR 97 ++L +++H++ G++ RRHL +H A ++QR R Sbjct: 2233 NKLRHSVIHIQAIFRGMKARRHLKTMHIAATLIQRRFR 2270
>PROA_GLUOX (Q5FRT2) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 427 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Frame = -3 Query: 309 GKAHKVGEGHAAEADMEDRLRRAGLD----VLLDVAVHRLVGALL 187 G + A +A MED LR AGLD +L A LVGA+L Sbjct: 158 GGGESLHSARAIQAAMEDGLRAAGLDEACVQILPSADRALVGAML 202
>SYM_PYRHO (O58721) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 723 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = +1 Query: 115 NEIRAMKVREVPAYLKPRLTWANVKKSTDQAVDRYIEKYIETSSPE 252 +E++ K +E+PA + R KK TD+ + +I Y+ ++PE Sbjct: 522 DEVKKWKFKELPAGHRVRKAEILFKKVTDEQIIYFILNYMGRNNPE 567 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,868,445 Number of Sequences: 219361 Number of extensions: 833195 Number of successful extensions: 3313 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3312 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
