ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481268.1| Oryza sativa (japonica cultivar-group), mRNA 293 2e-76
2dbj|AK100935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 2e-76
3gb|AY104060.1| Zea mays PCO133307 mRNA sequence 272 8e-70
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
5dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
6dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
7gb|BT018828.1| Zea mays clone EL01N0551C05.d mRNA sequence 78 3e-11
8ref|XM_323561.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.35
9ref|XM_955753.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.35
10emb|AL807369.1|NCG15D1 Neurospora crassa DNA linkage group V cos... 44 0.35
11emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cos... 44 0.35
12gb|AC084656.1|CBRG46J06 Caenorhabditis briggsae cosmid G46J06, c... 44 0.35
13gb|AC007376.9|AC007376 Homo sapiens chromosome 14 clone 99E15 co... 44 0.35
14dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 42 1.4
15gb|AY826833.1| Heterocapsa triquetra clone HTAP1 chloroplast asc... 42 1.4
16gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 42 1.4
17gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 5.5
18gb|AC107447.5| Rattus norvegicus 4 BAC CH230-46D21 (Children's H... 40 5.5
19ref|XM_603299.2| PREDICTED: Bos taurus similar to Antigen peptid... 40 5.5
20gb|AC161111.2| Mus musculus chromosome 15, clone RP23-50B6, comp... 40 5.5
21gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 40 5.5
22emb|AL451163.8| Human DNA sequence from clone RP11-438G15 on chr... 40 5.5
23emb|AL450990.8| Human DNA sequence from clone RP11-199H2 on chro... 40 5.5
24gb|AC157558.8| Mus musculus chromosome 8, clone RP24-367D19, com... 40 5.5
25gb|AY957499.1| Bos taurus glutamate-cysteine ligase catalytic su... 40 5.5
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
27dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
28emb|BX323545.11| Mouse DNA sequence from clone RP23-358N13 on ch... 40 5.5
29emb|AL732322.10| Mouse DNA sequence from clone RP23-234H9 on chr... 40 5.5
30gb|AC153978.5| Mus musculus 10 BAC RP24-217I1 (Roswell Park Canc... 40 5.5
31ref|XM_564458.1| Anopheles gambiae str. PEST ENSANGP00000029604 ... 40 5.5
32emb|BX323833.4| Pig DNA sequence from clone XX-554F3, complete s... 40 5.5
33gb|AC114581.8| Mus musculus chromosome 8, clone RP23-170M20, com... 40 5.5 
>ref|XM_481268.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1292

 Score =  293 bits (148), Expect = 2e-76
 Identities = 288/337 (85%)
 Strand = Plus / Plus

                                                                       
Query: 77  gcgatgggggaccacgaggcgcgcggggacgacacggagaggaaggcggacaagaagctc 136
           |||||||||||||||||||| |||||||| |||   |||| ||||||||| |||||||||
Sbjct: 135 gcgatgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctc 194

                                                                       
Query: 137 tccggctgggggctcttcggctccaagtacgaggacgccgccgacctatatgataaggcc 196
           ||||| |||||| |||||||||||||||||||||||||||||||||| |  || ||||  
Sbjct: 195 tccgggtgggggatcttcggctccaagtacgaggacgccgccgacctcttcgacaagggg 254

                                                                       
Query: 197 gccaactttttcaagctctcaaaaaactggaacagagctgcatctgtgtacatcaagatt 256
           |||||||  ||||||||| | || ||||||| ||||||||||   |||||||||||||||
Sbjct: 255 gccaactccttcaagctcgccaagaactggagcagagctgcacaagtgtacatcaagatt 314

                                                                       
Query: 257 gctaattgccatctgaagggcgatagtaagcatgaagctgcctcagcttatgtggaagct 316
           ||||| |||||| ||||||| || ||||||||||||||||||||||||||||| || || 
Sbjct: 315 gctaactgccatttgaagggtgacagtaagcatgaagctgcctcagcttatgtcgaggcg 374

                                                                       
Query: 317 gcaaactgctacaaaaaattctcacctcaggaagctgcgcaagcgctagacgaggctgtt 376
           ||||| ||||| ||||| ||||| ||||| || ||||| ||||||||| || ||||||||
Sbjct: 375 gcaaattgctataaaaagttctctcctcaagaggctgcacaagcgctaaaccaggctgtt 434

                                                
Query: 377 aatcnnnnnnnggaaattggtagattgagcatggctg 413
            |||       ||||||||||||||||| ||||||||
Sbjct: 435 gatcttttcttggaaattggtagattgaacatggctg 471
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>dbj|AK100935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136I24, full
           insert sequence
          Length = 1292

 Score =  293 bits (148), Expect = 2e-76
 Identities = 288/337 (85%)
 Strand = Plus / Plus

                                                                       
Query: 77  gcgatgggggaccacgaggcgcgcggggacgacacggagaggaaggcggacaagaagctc 136
           |||||||||||||||||||| |||||||| |||   |||| ||||||||| |||||||||
Sbjct: 135 gcgatgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctc 194

                                                                       
Query: 137 tccggctgggggctcttcggctccaagtacgaggacgccgccgacctatatgataaggcc 196
           ||||| |||||| |||||||||||||||||||||||||||||||||| |  || ||||  
Sbjct: 195 tccgggtgggggatcttcggctccaagtacgaggacgccgccgacctcttcgacaagggg 254

                                                                       
Query: 197 gccaactttttcaagctctcaaaaaactggaacagagctgcatctgtgtacatcaagatt 256
           |||||||  ||||||||| | || ||||||| ||||||||||   |||||||||||||||
Sbjct: 255 gccaactccttcaagctcgccaagaactggagcagagctgcacaagtgtacatcaagatt 314

                                                                       
Query: 257 gctaattgccatctgaagggcgatagtaagcatgaagctgcctcagcttatgtggaagct 316
           ||||| |||||| ||||||| || ||||||||||||||||||||||||||||| || || 
Sbjct: 315 gctaactgccatttgaagggtgacagtaagcatgaagctgcctcagcttatgtcgaggcg 374

                                                                       
Query: 317 gcaaactgctacaaaaaattctcacctcaggaagctgcgcaagcgctagacgaggctgtt 376
           ||||| ||||| ||||| ||||| ||||| || ||||| ||||||||| || ||||||||
Sbjct: 375 gcaaattgctataaaaagttctctcctcaagaggctgcacaagcgctaaaccaggctgtt 434

                                                
Query: 377 aatcnnnnnnnggaaattggtagattgagcatggctg 413
            |||       ||||||||||||||||| ||||||||
Sbjct: 435 gatcttttcttggaaattggtagattgaacatggctg 471
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>gb|AY104060.1| Zea mays PCO133307 mRNA sequence
          Length = 1368

 Score =  272 bits (137), Expect = 8e-70
 Identities = 283/334 (84%)
 Strand = Plus / Plus

                                                                       
Query: 80  atgggggaccacgaggcgcgcggggacgacacggagaggaaggcggacaagaagctctcc 139
           ||||| || |||||||||||||| || |||   |||| ||||||||| ||||||||||| 
Sbjct: 196 atgggtgatcacgaggcgcgcggtgatgacttcgagaagaaggcggagaagaagctctcg 255

                                                                       
Query: 140 ggctgggggctcttcggctccaagtacgaggacgccgccgacctatatgataaggccgcc 199
           |||||||| ||||||||||||||||||||||||||||||||||| |  || ||||| || 
Sbjct: 256 ggctggggcctcttcggctccaagtacgaggacgccgccgacctcttcgacaaggctgcg 315

                                                                       
Query: 200 aactttttcaagctctcaaaaaactggaacagagctgcatctgtgtacatcaagattgct 259
           ||||  ||||||||| | || ||||||| |||||||||||| || |||||||||||||||
Sbjct: 316 aactccttcaagctcgccaagaactggagcagagctgcatcagtttacatcaagattgct 375

                                                                       
Query: 260 aattgccatctgaagggcgatagtaagcatgaagctgcctcagcttatgtggaagctgca 319
           || || ||| ||||||| ||||| |||||||| ||||||||||| || || || || |||
Sbjct: 376 aactgtcatttgaagggagatagcaagcatgaggctgcctcagcgtacgtcgaggcagca 435

                                                                       
Query: 320 aactgctacaaaaaattctcacctcaggaagctgcgcaagcgctagacgaggctgttaat 379
           || ||||||||||| || ||||||||||||||||||||||||||| || || ||||||||
Sbjct: 436 aattgctacaaaaagttttcacctcaggaagctgcgcaagcgctaaaccagtctgttaat 495

                                             
Query: 380 cnnnnnnnggaaattggtagattgagcatggctg 413
           |       |||||||||||| |||| ||||||||
Sbjct: 496 cttttcttggaaattggtaggttgaacatggctg 529
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  141 bits (71), Expect = 2e-30
 Identities = 98/107 (91%)
 Strand = Plus / Plus

                                                                            
Query: 77       gcgatgggggaccacgaggcgcgcggggacgacacggagaggaaggcggacaagaagctc 136
                |||||||||||||||||||| |||||||| |||   |||| ||||||||| |||||||||
Sbjct: 11096517 gcgatgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctc 11096576

                                                               
Query: 137      tccggctgggggctcttcggctccaagtacgaggacgccgccgacct 183
                ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11096577 tccgggtgggggatcttcggctccaagtacgaggacgccgccgacct 11096623



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                            
Query: 281      agtaagcatgaagctgcctcagcttatgtggaagctgcaaactgctacaaaaaattctca 340
                ||||||||||||||||||||||||||||| || || ||||| ||||| ||||| ||||| 
Sbjct: 11097688 agtaagcatgaagctgcctcagcttatgtcgaggcggcaaattgctataaaaagttctct 11097747

                     
Query: 341      cctca 345
                |||||
Sbjct: 11097748 cctca 11097752



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                               
Query: 229      cagagctgcatctgtgtacatcaagattgctaattgccatctgaagg 275
                ||||||||||   |||||||||||||||||||| |||||| ||||||
Sbjct: 11097547 cagagctgcacaagtgtacatcaagattgctaactgccatttgaagg 11097593



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 52/64 (81%)
 Strand = Plus / Plus

                                                                            
Query: 350      gctgcgcaagcgctagacgaggctgttaatcnnnnnnnggaaattggtagattgagcatg 409
                ||||| ||||||||| || |||||||| |||       ||||||||||||||||| ||||
Sbjct: 11099124 gctgcacaagcgctaaaccaggctgttgatcttttcttggaaattggtagattgaacatg 11099183

                    
Query: 410      gctg 413
                ||||
Sbjct: 11099184 gctg 11099187
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>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1446H11
          Length = 135488

 Score =  141 bits (71), Expect = 2e-30
 Identities = 98/107 (91%)
 Strand = Plus / Plus

                                                                         
Query: 77    gcgatgggggaccacgaggcgcgcggggacgacacggagaggaaggcggacaagaagctc 136
             |||||||||||||||||||| |||||||| |||   |||| ||||||||| |||||||||
Sbjct: 67123 gcgatgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctc 67182

                                                            
Query: 137   tccggctgggggctcttcggctccaagtacgaggacgccgccgacct 183
             ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 67183 tccgggtgggggatcttcggctccaagtacgaggacgccgccgacct 67229



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                         
Query: 281   agtaagcatgaagctgcctcagcttatgtggaagctgcaaactgctacaaaaaattctca 340
             ||||||||||||||||||||||||||||| || || ||||| ||||| ||||| ||||| 
Sbjct: 68294 agtaagcatgaagctgcctcagcttatgtcgaggcggcaaattgctataaaaagttctct 68353

                  
Query: 341   cctca 345
             |||||
Sbjct: 68354 cctca 68358



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 229   cagagctgcatctgtgtacatcaagattgctaattgccatctgaagg 275
             ||||||||||   |||||||||||||||||||| |||||| ||||||
Sbjct: 68153 cagagctgcacaagtgtacatcaagattgctaactgccatttgaagg 68199



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 52/64 (81%)
 Strand = Plus / Plus

                                                                         
Query: 350   gctgcgcaagcgctagacgaggctgttaatcnnnnnnnggaaattggtagattgagcatg 409
             ||||| ||||||||| || |||||||| |||       ||||||||||||||||| ||||
Sbjct: 69730 gctgcacaagcgctaaaccaggctgttgatcttttcttggaaattggtagattgaacatg 69789

                 
Query: 410   gctg 413
             ||||
Sbjct: 69790 gctg 69793
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>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0560B10, complete sequence
          Length = 108295

 Score =  141 bits (71), Expect = 2e-30
 Identities = 98/107 (91%)
 Strand = Plus / Plus

                                                                         
Query: 77    gcgatgggggaccacgaggcgcgcggggacgacacggagaggaaggcggacaagaagctc 136
             |||||||||||||||||||| |||||||| |||   |||| ||||||||| |||||||||
Sbjct: 55033 gcgatgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctc 55092

                                                            
Query: 137   tccggctgggggctcttcggctccaagtacgaggacgccgccgacct 183
             ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 55093 tccgggtgggggatcttcggctccaagtacgaggacgccgccgacct 55139



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                         
Query: 281   agtaagcatgaagctgcctcagcttatgtggaagctgcaaactgctacaaaaaattctca 340
             ||||||||||||||||||||||||||||| || || ||||| ||||| ||||| ||||| 
Sbjct: 56204 agtaagcatgaagctgcctcagcttatgtcgaggcggcaaattgctataaaaagttctct 56263

                  
Query: 341   cctca 345
             |||||
Sbjct: 56264 cctca 56268



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 229   cagagctgcatctgtgtacatcaagattgctaattgccatctgaagg 275
             ||||||||||   |||||||||||||||||||| |||||| ||||||
Sbjct: 56063 cagagctgcacaagtgtacatcaagattgctaactgccatttgaagg 56109



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 52/64 (81%)
 Strand = Plus / Plus

                                                                         
Query: 350   gctgcgcaagcgctagacgaggctgttaatcnnnnnnnggaaattggtagattgagcatg 409
             ||||| ||||||||| || |||||||| |||       ||||||||||||||||| ||||
Sbjct: 57640 gctgcacaagcgctaaaccaggctgttgatcttttcttggaaattggtagattgaacatg 57699

                 
Query: 410   gctg 413
             ||||
Sbjct: 57700 gctg 57703
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>gb|BT018828.1| Zea mays clone EL01N0551C05.d mRNA sequence
          Length = 1753

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 168/211 (79%)
 Strand = Plus / Plus

                                                                       
Query: 129 agaagctctccggctgggggctcttcggctccaagtacgaggacgccgccgacctatatg 188
           ||||||||||||||||||| |||||||||   ||||||||||| |||||||||||    |
Sbjct: 148 agaagctctccggctggggcctcttcggcaataagtacgaggaagccgccgacctcctcg 207

                                                                       
Query: 189 ataaggccgccaactttttcaagctctcaaaaaactggaacagagctgcatctgtgtaca 248
           | | ||| | || ||| ||||| ||| | || ||||||| |||||| ||  | || ||||
Sbjct: 208 acagggctggcagcttcttcaaactcgcgaagaactggagcagagcggctgcggtataca 267

                                                                       
Query: 249 tcaagattgctaattgccatctgaagggcgatagtaagcatgaagctgcctcagcttatg 308
             ||||||||  |||| ||| || |||| ||||  ||||| || |||||||| |||||||
Sbjct: 268 aaaagattgcagattgtcatttgcagggggataacaagcacgatgctgcctctgcttatg 327

                                          
Query: 309 tggaagctgcaaactgctacaaaaaattctc 339
           | || || |||||||||||||| || |||||
Sbjct: 328 ttgaggcagcaaactgctacaagaagttctc 358
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>ref|XM_323561.1| Neurospora crassa OR74A hypothetical protein (NCU04222.1) partial
            mRNA
          Length = 2448

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 113  gagaggaaggcggacaagaagc 134
            ||||||||||||||||||||||
Sbjct: 2372 gagaggaaggcggacaagaagc 2393
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>ref|XM_955753.1| Neurospora crassa OR74A hypothetical protein (NCU04222.1) partial
            mRNA
          Length = 2448

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 113  gagaggaaggcggacaagaagc 134
            ||||||||||||||||||||||
Sbjct: 2372 gagaggaaggcggacaagaagc 2393
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>emb|AL807369.1|NCG15D1 Neurospora crassa DNA linkage group V cosmid contig G15D1
          Length = 62178

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 113   gagaggaaggcggacaagaagc 134
             ||||||||||||||||||||||
Sbjct: 21650 gagaggaaggcggacaagaagc 21671
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>emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cosmid contig 62D11
          Length = 102165

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 113   gagaggaaggcggacaagaagc 134
             ||||||||||||||||||||||
Sbjct: 86331 gagaggaaggcggacaagaagc 86352
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>gb|AC084656.1|CBRG46J06 Caenorhabditis briggsae cosmid G46J06, complete sequence
          Length = 42404

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 55    ccggagcagcagccagtcggca 76
             ||||||||||||||||||||||
Sbjct: 19346 ccggagcagcagccagtcggca 19367
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>gb|AC007376.9|AC007376 Homo sapiens chromosome 14 clone 99E15 containing gene for KIAA 1036,
              complete CDS, complete sequence
          Length = 186330

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 224    tggaacagagctgcatctgtgtacat 249
              |||||||||||||||| |||||||||
Sbjct: 115034 tggaacagagctgcatgtgtgtacat 115009
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 57      ggagcagcagccagtcggcag 77
               |||||||||||||||||||||
Sbjct: 1013690 ggagcagcagccagtcggcag 1013670
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>gb|AY826833.1| Heterocapsa triquetra clone HTAP1 chloroplast ascorbate peroxidase
           mRNA, partial cds; nuclear gene for chloroplast product
          Length = 1266

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                            
Query: 118 gaaggcggacaagaagctctccg-gctgggggc 149
           ||||||| ||||||||||||||| |||||||||
Sbjct: 951 gaaggcgcacaagaagctctccgagctgggggc 983
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 57     ggagcagcagccagtcggcag 77
              |||||||||||||||||||||
Sbjct: 607182 ggagcagcagccagtcggcag 607202
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>gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OABb-433A1, complete
            sequence
          Length = 161653

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  aaaaaactggaacagagctg 236
            ||||||||||||||||||||
Sbjct: 9043 aaaaaactggaacagagctg 9024
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>gb|AC107447.5| Rattus norvegicus 4 BAC CH230-46D21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 133054

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 225   ggaacagagctgcatctgtgtaca 248
             ||||||||||||||| ||||||||
Sbjct: 17950 ggaacagagctgcatgtgtgtaca 17973
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>ref|XM_603299.2| PREDICTED: Bos taurus similar to Antigen peptide transporter 1
           (APT1) (Peptide transporter TAP1) (ATP-binding cassette
           sub-family B member 2) (Peptide transporter PSF1)
           (Peptide supply factor 1) (PSF-1) (Peptide transporter
           involved in antigen processing 1)... (LOC524959), mRNA
          Length = 2965

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 52  cggccggagcagcagccagtcggc 75
           |||||||||||||| |||||||||
Sbjct: 114 cggccggagcagcatccagtcggc 91
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>gb|AC161111.2| Mus musculus chromosome 15, clone RP23-50B6, complete sequence
          Length = 200074

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 326    tacaaaaaattctcacctcaggaa 349
              |||||||||||||||||| |||||
Sbjct: 156837 tacaaaaaattctcacctgaggaa 156814
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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 215     tcaaaaaactggaacagagc 234
               ||||||||||||||||||||
Sbjct: 2216601 tcaaaaaactggaacagagc 2216620
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>emb|AL451163.8| Human DNA sequence from clone RP11-438G15 on chromosome 1, complete
            sequence
          Length = 72546

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  atgtggaagctgcaaactgc 325
            ||||||||||||||||||||
Sbjct: 1891 atgtggaagctgcaaactgc 1910
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>emb|AL450990.8| Human DNA sequence from clone RP11-199H2 on chromosome 1 Contains a
              voltage-dependent anion channel 1 (VDAC1) pseudogene,
              complete sequence
          Length = 119110

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    atgtggaagctgcaaactgc 325
              ||||||||||||||||||||
Sbjct: 119001 atgtggaagctgcaaactgc 119020



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   atgtggaagctgcaaactgc 325
             ||||||||||||||||||||
Sbjct: 87685 atgtggaagctgcaaactgc 87666
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>gb|AC157558.8| Mus musculus chromosome 8, clone RP24-367D19, complete sequence
          Length = 142704

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    aaaaattctcacctcaggaa 349
              ||||||||||||||||||||
Sbjct: 122213 aaaaattctcacctcaggaa 122232
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>gb|AY957499.1| Bos taurus glutamate-cysteine ligase catalytic subunit (GCLC), MHC class
              II antigen (DSB), MHC class II antigen (DYA), MHC class II
              antigen (DYB), MHC class II antigen (DOB), transporter 2
              ATP-binding cassette sub-family B (TAP2), proteasome
              subunit beta type 8 (PSMB8), transporter 1 ATP-binding
              cassette sub-family B (TAP1), proteosome subunit beta type
              9 (PSMB9), histone H2B-like (H2B), MHC class II antigen
              (DMB), MHC class II antigen (DMA), bromodomain containing 2
              (BRD2), MHC class II antigen (DOA), collagen type XI alpha
              2 (COL11A2), retinoid X receptor beta (RXRB), solute
              carrier family 39 zinc transporter member 7 (HKE4), and
              hydroxysteroid (17-beta) dehydrogenase 8 (HKE6) genes,
              complete cds; and ring finger protein 1 (RING1) gene,
              partial cds
          Length = 447010

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 52     cggccggagcagcagccagtcggc 75
              |||||||||||||| |||||||||
Sbjct: 238960 cggccggagcagcatccagtcggc 238983
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 103      ggacgacacggagaggaagg 122
                ||||||||||||||||||||
Sbjct: 10399751 ggacgacacggagaggaagg 10399770
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>dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0669G10
          Length = 133372

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   ggacgacacggagaggaagg 122
             ||||||||||||||||||||
Sbjct: 42173 ggacgacacggagaggaagg 42192
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>emb|BX323545.11| Mouse DNA sequence from clone RP23-358N13 on chromosome 4, complete
             sequence
          Length = 47574

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   ttctcacctcaggaagctgc 354
             ||||||||||||||||||||
Sbjct: 17339 ttctcacctcaggaagctgc 17320
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>emb|AL732322.10| Mouse DNA sequence from clone RP23-234H9 on chromosome X, complete
             sequence
          Length = 114453

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   aaaaattctcacctcaggaa 349
             ||||||||||||||||||||
Sbjct: 81198 aaaaattctcacctcaggaa 81217
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>gb|AC153978.5| Mus musculus 10 BAC RP24-217I1 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 172497

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    gcttatgtggaagctgcaaa 321
              ||||||||||||||||||||
Sbjct: 108435 gcttatgtggaagctgcaaa 108454
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>ref|XM_564458.1| Anopheles gambiae str. PEST ENSANGP00000029604
          (ENSANGG00000023731), partial mRNA
          Length = 642

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 61 cagcagccagtcggcagcga 80
          ||||||||||||||||||||
Sbjct: 33 cagcagccagtcggcagcga 52
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>emb|BX323833.4| Pig DNA sequence from clone XX-554F3, complete sequence
          Length = 121483

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 52    cggccggagcagcagccagtcggc 75
             |||||||||||||| |||||||||
Sbjct: 26209 cggccggagcagcacccagtcggc 26186
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>gb|AC114581.8| Mus musculus chromosome 8, clone RP23-170M20, complete sequence
          Length = 197312

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    aaaaattctcacctcaggaa 349
              ||||||||||||||||||||
Sbjct: 188299 aaaaattctcacctcaggaa 188280


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,609,089
Number of Sequences: 3902068
Number of extensions: 3609089
Number of successful extensions: 93699
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93555
Number of HSP's gapped (non-prelim): 142
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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